| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,771,296 | C→T | T28T (ACG→ACA) | yibH ← | inner membrane protein YibH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,771,296 | 0 | C | T | 93.9% | 87.7 / NA | 33 | T28T (ACG→ACA) | yibH | inner membrane protein YibH |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (13/18); minor base G (1/1); total (14/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTCAGCCTGAAGTCTGTCAACTCGCGCCTGGTAACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCAC > NC_000913/3771053‑3771527 | gTCAGCCTGAAGTCTGTCAACTCGCGCCTGGTAACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGGGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACt < 1:357345/251‑1 (MQ=255) gCCTGAAGTCTGTCAACTCGCGCCTGGTAACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCATCGCCGCCGT‑CGCCAGTGTCCACTGAtt < 2:391629/251‑1 (MQ=255) ccTGAAGTCTGTCAACTCGCGCCTGGTAACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGAttt < 1:105186/251‑1 (MQ=255) gTCAACGCGCGCCTGGTAACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCTGTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGaa < 1:353644/248‑1 (MQ=255) gAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGcc > 2:183301/1‑251 (MQ=255) cTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCATCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGcc > 1:272966/1‑250 (MQ=255) cACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGAGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGtt > 2:72667/1‑250 (MQ=255) aaGCTTATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTATTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATTCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATcc < 1:72667/250‑1 (MQ=255) aGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCAt > 2:263192/1‑251 (MQ=255) agtattCTTGTCAGTAGCTTCATTAACTAGTCCCGTCACCGGTGGCGTGATAGGGATCGGTATCACTGCCTTTGTG‑GCTGTAAAAGTGTAAGGGTTGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAGCACGCCTCCCAGCGCCGCCGT‑CGCCGGTGTCCACTGAGTTACCGGAATGCGGAAGATTTTAAAGACCCCCCACGCCAGTGCCACGTAAGTTAAGACAATCATTACATCCATAATTa < 2:56116/249‑1 (MQ=255) cTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGAtctc > 2:103619/1‑251 (MQ=255) cTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATAACTGCCTTT‑TGCGCGGTACAAGCGTAACGGTGGTTGTAGTTCCTCAACAAAAGCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCCGGGTCCACTGAGTTACCGGAATGCGGAAGGTTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAGAATCAATAGATCCTTAATTAGAtctc > 2:119677/1‑251 (MQ=255) cAGTGACTTCCGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGCTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCAACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCggg > 2:332447/1‑250 (MQ=255) gTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAAc < 1:14011/251‑1 (MQ=255) aaCAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATagtc > 1:262533/1‑251 (MQ=255) ccGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGAGTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCtttt < 1:250740/251‑1 (MQ=255) ccGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGAGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCtttt > 1:220512/1‑251 (MQ=255) gTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTtc > 1:67982/1‑251 (MQ=255) ggagTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGgcggcg > 2:165512/4‑251 (MQ=255) cGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGAGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCCTAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGgcggcgcg > 1:50773/1‑249 (MQ=255) aTCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGcc < 1:208184/249‑1 (MQ=255) aCTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGaa < 1:302845/251‑1 (MQ=255) ggcttgtGCGAGGTAAAAGTGTAAGGGTGGGTGTAGTTCACCGACAAAAGCAAACCTCACTCCAGAAACACGCCCCGCCGCGCCGCCGT‑CGCCAGTTACCTCTGATTTACCGGAAAGCTGAAGACTTTAAAGACCGTCCACTGGAGCGCCTCGTAAGTGAAAACAAACAATAAATCCATAATTAGATCGCCGGGAATTTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAAt < 2:202150/244‑1 (MQ=255) ccTTT‑GGCGCGGTAAAACTGTAATGGTGGTTGTAGTTCATCAACAAAATCAACCCACTCACCAGCAACCCGCCTCCCAGCGCCGCCTT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATGAGATCTCCGGGAACTTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGTCGGGAAATTc < 2:24159/251‑1 (MQ=255) aaaaGTGTAGGGGGGGTTTTAGTTCATCAACAAAATCAACCCGCTCACCAGAACCACGCCTCCCAGCACCGC‑GTGCGCCAGGGACCGCTGAGTTACCGGAATGCGGAAGAGTTTAAAAGCAGCCCACGCCAGCGCCGCGTAAGTTAAAACTATCAATAGAGCCATAATTAGATCTCCGGGAACGTGGAATAGGCAGTCTTTTTCTCGGCGGCGATTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTgc < 2:219248/251‑1 (MQ=255) tGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTc > 1:167695/1‑249 (MQ=255) gTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGt < 1:270002/251‑1 (MQ=255) catcaACAAAATCACACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CACCAGTTTCCACTGATTTGCCGGAATGCGGAAGATTTTAAAGTCCGCCCACGCCAGCGCCACTTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATCCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCtt < 1:211934/250‑1 (MQ=255) aacnaAATCAAACCACGCACCAGAACCACGCCTCCCAGCGCCGCCGT‑CGCCATTGTCCACTGATTTACCGGAATGCGTAAGAGTTTAAATCCCGCCCTCGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCTTGGTCAGTCGCTTTCTcc < 2:354935/251‑1 (MQ=255) acccACCATAAACACGCCTCCCAGCCCCGCCGT‑CGCCAGTGGCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCGCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGGGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCTATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACAtg < 2:116248/248‑1 (MQ=255) caccagtaaccagCCTACCAGCGCCGCCGT‑CGCCAGTGTCCACTGATGTACCGGAATGCGGAAGATTTTAAAGGCCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGGTGATGCTCCAGCCGTGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACAtgt < 1:313062/237‑1 (MQ=255) cGCCTCCCAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGATGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATAcccc > 1:281379/1‑251 (MQ=255) ccAGCGCCGCCGT‑CGCCAGTGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCAc < 1:263192/251‑1 (MQ=255) | GTCAGCCTGAAGTCTGTCAACTCGCGCCTGGTAACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGTAACAATTCCCGTCACCTGTGGCGTGATAGGGATCGCTATCACTGCCTTT‑TGCGCGGTAAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGT‑CGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCATAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGTTGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCAC > NC_000913/3771053‑3771527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |