| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,556,181 | C→T | D34N (GAT→AAT) | bdm ← | biofilm‑dependent modulation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,556,181 | 0 | C | T | 96.3% | 88.8 / ‑6.0 | 27 | D34N (GAT→AAT) | bdm | biofilm‑dependent modulation protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (11/15); minor base A (0/1); total (11/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATCTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATATTTGCCGCTTCGTTGTTAAGATTAGTCCTGGTTGATGATTTTTATATTTTAACACCATGATATTCAT > NC_000913/1555958‑1556425 | tttCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCg > 1:396799/1‑251 (MQ=255) tCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGGGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGa > 2:143463/1‑250 (MQ=255) tCATTTTAACTCCTCAATCATGTAGCTAGTTTTAATGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCCTAGCCCCTTCAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCTTTATCAGAAGCTTCAACCCCTTTGGTCAGCTCCATGATAATGTCATTTTCAGTGACAACACCATGCTGTCCCCgt > 2:66576/1‑249 (MQ=255) ggACAACATCGCCGTAGCGAAGAAACACGTTCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGATCGGGTTct < 2:378386/251‑1 (MQ=255) cagcaTCGCCGTAGCGAAGAAACTCGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTATGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCATAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCATTTACAACACCATGCTGTTCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGctcttct < 2:392554/248‑4 (MQ=255) cGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGaa < 2:396799/251‑1 (MQ=255) aagaaACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAACGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCt > 1:364336/1‑251 (MQ=255) aagaaACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCt < 1:72219/251‑1 (MQ=255) acacGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGataa < 1:265517/251‑1 (MQ=255) gTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAg < 1:243659/251‑1 (MQ=255) gCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTa < 1:128867/251‑1 (MQ=255) aaaCCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACCCCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTctg < 1:4133/219‑1 (MQ=255) aaaCCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTctg > 2:4133/1‑219 (MQ=255) aCCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATACTAAGTAAACAt > 1:296198/1‑251 (MQ=255) aCCCCTAAATGAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACAt < 2:220563/251‑1 (MQ=255) aaaTTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCACCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGAt > 2:395403/1‑251 (MQ=255) aGNACCTTAAAGTGTTGGGTGCTGGCCACTTACCACATAATTGATCGTTTGCTGGGAGATATCACTGAGGATTTCGTTATCATAAGCTTCAACCCATTTGGTTGGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAAGCCTTGGTCAATGGGATTAACCAGAGCGGGTTCTGCTTTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCGCCGTTTCTGTGTATTTATg < 2:365229/250‑1 (MQ=255) gggTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCg < 1:57169/251‑1 (MQ=255) cGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCCCATTCAGCATGGc < 2:273778/250‑1 (MQ=255) ggTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATAttt < 1:359312/250‑1 (MQ=255) atatCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATATTTGCCGCt > 1:168328/1‑251 (MQ=255) aCTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCAt > 2:143858/1‑229 (MQ=255) aCTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCAt < 1:143858/229‑1 (MQ=255) caGGATGTCGCTATCATGCGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTGATATACGGTGACAACCCCATGCTGTAGCCGAAGGCCTTGGTCAATTGCATTAACCAGAGCGGGTTCGGCTGTTGAATTTTCTGCCTGATAATAAGTAAACAGAGTGATTCTCCGTGTCTGTGGATTTATGGTGTCTGCTACCGATCGCAGATTTATAAAGCACAATCAGCATGGCAAATGTTTCGCGCTTAgttg < 2:204778/248‑1 (MQ=255) tGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATATTTGCCGCTTCGTTGTTa > 1:266738/1‑247 (MQ=255) cATGAGAATGTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGATCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATATTTGCCGCTTCGTTGTTAAGATTAGTCATGGTTGATGATTTTTATATTTTAACACCATg > 2:302721/1‑251 (MQ=255) gTCATTTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATATTTGCCGCTTCGTTGTTAAGATTAGTCCTGGTTGATGATTTTTATATTTTAACACCATGATATTCAt < 1:135449/250‑1 (MQ=255) | TTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTTAAAGCGTAGGGTGCTGGCCACTGACCACATAATTGATCGTTTGCTGGTAGATATCACTGAGGATGTCGTTATCAGAAGCTTCAACCCATTTGGTCAGCTCCATGAGAATGTCATCTTCAGTGACAACACCATGCTGTGCCCGAAGGCCTTGCTCAATGGCATTAACCAGAGCGGGTTCTGCTGTTGAATTTTCTGCCTGATAATAAGTAAACATAGTGATTCTCCGTGTCTGTGTATTTATGGTGTCTGCTACGGATCGCAGATTTATAAAGCACATTCAGCATGGCAAATATTTGCCGCTTCGTTGTTAAGATTAGTCCTGGTTGATGATTTTTATATTTTAACACCATGATATTCAT > NC_000913/1555958‑1556425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |