New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	382179 =	NA (NA)	25 (0.650)	25/486	0.6	NA	noncoding (920/1331 nt)	IS2	repeat region
	?	NC_000913	= 382590	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

TGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCT  >  NC_000913/382344‑382836                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                        tGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAAtt                                                                                                                                                                                                                                                      >  2:110322/1‑250 (MQ=11)                          aGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAATCCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTACTGGGTTAAGTGATAACAGATTTCTGGAAATATAGGGGCAAATCCCATTCCCTATCAGGCAGTTTGCGCCAATc                                                                                                                                                                                                                             >  2:383795/1‑250 (MQ=255)                          aGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATc                                                                                                                                                                                                                             >  2:308994/1‑250 (MQ=255)                                               gATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACgg                                                                                                                                                                                                       <  1:308994/251‑1 (MQ=255)                                               gATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCAAATCACTACCGGACCCTGAATAACgg                                                                                                                                                                                                       <  1:383795/251‑1 (MQ=255)                                                           cTACATCAGTATCATGCCCCAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACaa                                                                                                                                                                                           >  1:307703/1‑250 (MQ=255)                                                             aCATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACaa                                                                                                                                                                                           <  2:307703/248‑1 (MQ=255)                                                                  aGTATCATGCTCAAAACAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGATCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGGTTGCGCCAATc                                                                                                                                                                                                                             <  2:287315/210‑1 (MQ=255)                                                                  aGTATCATGCCCAAACCAGACGGGTTAACGGCCGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATc                                                                                                                                                                                                                             >  1:287315/1‑210 (MQ=255)                                                                   gTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGt                                                                                                                                                                                   >  1:282446/1‑250 (MQ=255)                                                                                 ccAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATaac                                                                                                                                                                    >  1:117149/1‑251 (MQ=255)                                                                                                gcagccAAGACCCATGCAGATGCGTTCGAGCATTAGAACGAATGTCATGCGCAGAGTGCTCTGGGTTAGCGGTCTCTCCGGGAATATCTGCGGCAGCGGGCTTGTAATTGGTTAAGTGATAACAGATGGCTGGAAATATAGGGGCAAATCCAAGTACCTATCAGGCATTTTGCGCCAATCACTACCGGACCCTTAATAATGGCAC‑ATCGGCAAATACGGGTATTCGATCCGATAACAACGTTACCGGCAGt                                                                                                                                                     <  2:47662/251‑1 (MQ=12)                                                                                                     aaaGAACCTAGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGCTATCGCTCGCCACGGGAACATCTGCGGCAGCGGGCTTGTAATGGGTTAAGAGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTAGCGCCGATAACAACTTCACCTGCACTTtcat                                                                                                                                                >  2:133502/1‑251 (MQ=255)                                                                                                              tGCAGAGGCGTGTGAGCATTATAACGAATGGCATCCGCATAGTGCGCGGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACCGATGTCTGGAAATATAGGTGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCCCCGATAACAACTTCACCTGCAGTTTCATCaatact                                                                                                                                         <  2:98649/249‑3 (MQ=25)                                                                                                               gCAGAGGCGTTCGAGCATTATAACGAATCTCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGAAGATGGCTTGTAATGGGTTAAGTGCTAACAGCTGTCTGTAAATATAGAGTCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCCGTTTCATCGCTAATTAc                                                                                                                                      >  2:241853/1‑251 (MQ=25)                                                                                                                   aagCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTgg                                                                                                                                  >  2:41726/3‑251 (MQ=255)                                                                                                                             gCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCt                                                                                                                        <  1:399191/251‑1 (MQ=255)                                                                                                                                      agAATTGCATCCGCATAGTGCGCTGGGTGATCGCTCGCCACGGGAATATCTGCGGCAGCGGGTTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTCCCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTTTTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATAtttt                                                                                                               <  1:241853/250‑1 (MQ=255)                                                                                                                                                ccGCATAGTGCGCTGGGTTATCGCTCGAGACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAAGCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAACTACCTGGTCTGCAATCTGAATATTTTTCTCTTTaa                                                                                                      <  1:344949/250‑1 (MQ=255)                                                                                                                                                       gTGCGCTTGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCTTGAATAACGGCACCAT‑GACAAAGACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCAGCAATAATTGCCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGc                                                                                              <  1:358893/251‑1 (MQ=255)                                                                                                                                                              gggTTAGCGCTCGCCACGGGAATATCTGCGGCAGCGGTCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGAt                                                                                       <  2:102690/251‑1 (MQ=255)                                                                                                                                                                    tcgttcgcCACAGGAATATCTGCGGCAGAGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGTGGCAAATCCAATTACCTATCAGGCAGTTTGCGGCGATCACTACCGGTCCCTGAATAACGGCACCAT‑GACAGATACGGGTATTCGCGCCGATAACAACTTCACCTTCAGTTTCATCAATAATTACCTTGTCTTCATTCTGAATATTTTTCTCTTTAACATTAAGCATCAGATAGttc                                                                                  <  2:75441/246‑2 (MQ=37)                                                                                                                                                                                                cGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAAt                                                     >  1:181422/1‑251 (MQ=255)                                                                                                                                                                                                         aaTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGtt                                             <  2:144065/250‑1 (MQ=255)                                                                                                                                                                                                              gTTAAGTGATCACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGCTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGATCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGACTAAGCGGTTGACGCt                                       >  2:42597/1‑251 (MQ=255)                                                                                                                                                                                                                                           aGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGttt          >  1:313921/1‑251 (MQ=255)                                                                                                                                                                                                                                                   aTCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCt  >  1:180535/1‑251 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                        TGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAT‑GACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCT  >  NC_000913/382344‑382836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.