New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3113622 =	35 (0.900)	3 (0.080)	3/490	3.7	7.9%	coding (731/810 nt)	pppA	prepilin peptidase
	?	NC_000913	= 3584195	NA (NA)					noncoding (768/768 nt)	IS1	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCA  >  NC_000913/3113379‑3113868                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                       aCTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAATCAATGCCTGTAGATAAAGTGTTGCTATACCTCCCATACGTAAACACGGTCCAAAAGGCAGTGTGGTTGATCTTCTTTTTGt                                                                                                                                                                                                                                                 <  2:55583/251‑1 (MQ=255)  cTGGCATTTTCATTATGGCTGGCACAGCCACTTCATAATCCTGTCACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGAAATGGGAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGGGGTTATCATTAAAACAATGACTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGt                                                                                                                                                                                                                                                 >  2:305777/1‑250 (MQ=255)                               aCTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATg                                                                                                                                                                                                                    >  1:288502/1‑250 (MQ=255)                                   aataatCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAAGCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGc                                                                                                                                                                                                                <  2:87016/250‑1 (MQ=255)                                      aatCCTGTAACGGTCAACCAAAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGAAATGGAAAATAATCACTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATCATGACGTGGTTATAATTAAAACAATGCCTGTAGATAAAGTGTTACTATAACGCCCAGACTTAAACACGGTACAAAAGGCAGGGTGGTTGATCCTCTTTTTGTAATAATGGCAAATAGCAGGCCGCAGCATGAGACGAtt                                                                                                                                                                                                            >  2:28687/1‑251 (MQ=255)                                            gTAACGCTCAACAATAGCGCTATTAATACCCTCCCTGGCATTTGTTTTCTCGACATGGTAAATAATCTCTAAGGCTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCACAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCCGGCCGCAGCATGCGGCGATTGAAGc                                                                                                                                                                                                       >  1:42850/1‑250 (MQ=255)                                                       caaTAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAACCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATACAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGc                                                                                                                                                                                             >  2:156629/1‑249 (MQ=255)                                                        aaTAGCGTTATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAATCTCTAAGGCTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGGTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCCGTGAGGTTGATCCTCTTTTTGTAATAACGGCCTATATAAGGCCGCAGCATGAGGCGATTACAGCCACATTGGGCAGc                                                                                                                                                                                          >  2:286431/1‑251 (MQ=255)                                                                                              cGACATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCa                                                                                                                                                                                                                                >  2:23478/1‑175 (MQ=255)                                                                                              cGACATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCa                                                                                                                                                                                                                                <  1:23478/175‑1 (MQ=255)                                                                                                 cATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATATCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCACCACCCAGCGACCTAACGCGGCGAAAAGTa                                                                                                                                                  >  2:297762/1‑250 (MQ=255)                                                                                                                    ggTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGAAATACATCGCCCATGCCTAAt                                                                                                                              >  1:245877/1‑251 (MQ=255)                                                                                                                           aataaGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGcttctt                                                                                                                       <  2:5893/251‑1 (MQ=255)                                                                                                                           aataaGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGcttctt                                                                                                                       >  1:5893/1‑251 (MQ=255)                                                                                                                                gagTTAAAATGTCACTTTGATAATGACGTGGCTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGCCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGc                                                                                                                  >  1:397132/1‑251 (MQ=255)                                                                                                                                 agTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAGACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGc                                                                                                                  >  1:148576/1‑250 (MQ=255)                                                                                                                                  gTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAg                                                                                                                <  2:288502/251‑1 (MQ=255)                                                                                                                                     aaaaTGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAAc                                                                                                             >  2:83355/1‑251 (MQ=255)                                                                                                                                          gTCACTTTGATAATGACGTGGTTACCATTAAAACAATGCCTGTAGAGAAAGTGTTGCTATACCGCCCAGACATAAACACGGTCCAAAAGTCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGGAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAATTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTAtt                                                                                                         <  2:339161/250‑1 (MQ=255)                                                                                                                                             aCTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCgg                                                                                                     >  2:61888/1‑251 (MQ=255)                                                                                                                                                        gACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGc                                                                                          <  2:39333/251‑1 (MQ=255)                                                                                                                                                           gTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGc                                                                                                                                   <  2:302200/207‑1 (MQ=255)                                                                                                                                                           gTGGTTATCATTAAAACAATGCCTGTAGATAAAGAGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGc                                                                                                                                   >  1:302200/1‑207 (MQ=255)                                                                                                                                                                     ttAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTaaaa                                                                               >  1:92545/1‑249 (MQ=255)                                                                                                                                                                           cAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATaa                                                                       <  2:309957/251‑1 (MQ=255)                                                                                                                                                                                     aGATAACGTGTTGCTCTACCGCCGAGGCTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGCCATATATCAGGCCGCAGCATGAGGAGCTTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAACGTGATAAATCccanc                                                               >  2:361828/1‑249 (MQ=255)                                                                                                                                                                                        tAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCACCATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGATATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGAc                                                          >  1:401406/1‑251 (MQ=255)                                                                                                                                                                                                                 ttAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACg                                                         >  2:171893/1‑227 (MQ=255)                                                                                                                                                                                                                 ttAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACg                                                         <  1:171893/227‑1 (MQ=255)                                                                                                                                                                                                                    aaCACGGTCCAAAAGGCAGTGTTGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGc                              <  1:338206/251‑1 (MQ=255)                                                                                                                                                                                                                           tCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGActct                       >  1:377105/1‑251 (MQ=255)                                                                                                                                                                                                                                aaGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACTCGGCGAAAAGTAAGACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCAGCAGGACGGCGGTGACTGCATCTTGTAGCGTGAGCGGACTCtgctgc                  <  2:62795/251‑1 (MQ=255)                                                                                                                                                                                                                                 aGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTGAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTgcg                 >  1:116806/1‑251 (MQ=255)                                                                                                                                                                                                                                  ggCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTgcgc                >  1:373069/1‑251 (MQ=255)                                                                                                                                                                                                                                                 ccTCTTTTTGTAATATCGGCATATATCAGGACGCAGCATGAGGCGATTAAAGCAACATTGGTCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCCCCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCa  <  2:320520/250‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                       ACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTATCGACATGGTAAATAATCTCTAAGGTTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTGGTTATCATTAAAACAATGCCTGTAGATAAAGTGTTGCTATACCGCCCAGACTTAAACACGGTCCAAAAGGCAGTGTGGTTGATCCTCTTTTTGTAATAACGGCATATATCAGGCCGCAGCATGAGGCGATTAAAGCAACATTGGGCAGCGACAATGCCCCCACCCAGCCACCTAACGCGGCGAAAAGTAATACATCGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCA  >  NC_000913/3113379‑3113868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.