Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,666,074 IS1 (+) +9 bp coding (640‑648/1281 nt) csiE → stationary phase‑inducible protein CsiE

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 279163 =NA (NA)21 (0.970) 21/490 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 2666074 = 0 (0.000)coding (640/1281 nt) csiE stationary phase‑inducible protein CsiE
* ? NC_000913 = 291401NA (NA)19 (0.880) 19/488 0.3 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 2666082 0 (0.000)coding (648/1281 nt) csiE stationary phase‑inducible protein CsiE

CGTTAGTGAATCTCTGCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACCCACGCCTGGTG  >  NC_000913/2665826‑2666322
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        
caccctttgacgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaatggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaactctatcaataagttggagtcattaccCt                                                                                                                                                                                                                                                         <  1:103017‑M2/2‑1 (MQ=255)
cGTTAGTGAAGCTCTGCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAAGCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtt                                                                                                                                                                                                                                                        <  1:17263/251‑1 (MQ=255)
    aGTGAATCTCTGCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGCTTATGGCACTACtttttt                                                                                                                                                                                                                                                    >  2:19327/1‑251 (MQ=255)
        gacgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCa                                                                                                                                                                                                                                                 <  1:208593‑M2/10‑1 (MQ=255)
                   ccGACGGCTGCAAAAACTCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGATTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATGTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgcca                                                                                                                                                                                                                                     >  2:61967‑M2/1‑238 (MQ=255)
                           cggaaggatggccgctgtatgaatcccgcctgaagcgaaaactgcacgtaatcagcaagcgatatacgcagcgaatttagcggcataacctgaatctgaggcagcacctggcacggcttggacggaagtcgctgtctttctcaaaatcggtggagcagcatggcaaagtcatcgtgcattatctgaacataaaacgctatcaataagttggagtccttaccCTTTTTTCCATGTTGCGTGTTCCCGATCCa                                                                                                                                                                                                                             <  2:30325‑M2/30‑1 (MQ=255)
                                    gCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgt                                                                                                                                                                                                                    >  1:84083‑M2/1‑221 (MQ=255)
                                           aTCGCTCGATATTCATTTCCTTTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatgg                                                                                                                                                                                                             >  2:143673‑M2/1‑214 (MQ=255)
                                             cgcgcgATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGCGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttcctgttttcgtgtatgattgtg                                                                                                                                                                                                           <  2:181365‑M2/251‑40 (MQ=255)
                                                          gaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAt                                                                                                                                                                                              <  2:196950‑M2/61‑1 (MQ=255)
                                                                 tgtCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAAGTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg                                                                                                                                                                                        >  1:87633‑M2/1‑192 (MQ=255)
                                                                    cTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt                                                                                                                                                                                    <  1:114549‑M2/251‑63 (MQ=255)
                                                                     tgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCt                                                                                                                                                                                   >  1:169607‑M2/180‑251 (MQ=255)
                                                                          gtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcaccgggcacggctgggacggaagtcgctggcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTGTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCaa                                                                                                                                                                              <  2:46068‑M2/77‑1 (MQ=255)
                                                                           tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                                                                                                                                                                     >  1:1049‑M2/1‑182 (MQ=255)
                                                                           tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                                                                                                                                                                     <  2:1049‑M2/227‑46 (MQ=255)
                                                                            gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct                                                                                                                                                                            >  2:47715‑M2/1‑181 (MQ=255)
                                                                            aatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCaaa                                                                                                                                                                             <  2:47805‑M2/78‑1 (MQ=255)
                                                                              aaTATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat                                                                                                                                                                          <  1:124184‑M2/251‑73 (MQ=255)
                                                                               cagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTc                                                                                                                                                                         <  2:169607‑M2/82‑1 (MQ=255)
                                                                                                        ggAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac                                                                                                                                                  >  1:108067‑M2/1‑153 (MQ=255)
                                                                                                               ataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGtt                                                                                                                                         <  1:187431‑M2/114‑1 (MQ=255)
                                                                                                                    ctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttatcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGttt                                                                                                                                    >  1:141798‑M2/133‑251 (MQ=255)
                                                                                                                      gaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCTGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGttt                                                                                                                                    <  2:54087‑M2/119‑1 (MQ=255)
                                                                                                                       aatctgaggcagcacctggcacggctgggacggaagtcgatgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGttttt                                                                                                                                  >  1:193632‑M2/130‑250 (MQ=255)
                                                                                                                                             gggCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAAGTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccgga                                                                                                             >  1:108622‑M2/1‑116 (MQ=255)
                                                                                                                                                 gggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAg                                                                                                        <  1:99440‑M2/147‑1 (MQ=255)
                                                                                                                                                             tGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgc                                                                                           <  2:173808‑M2/251‑152 (MQ=255)
                                                                                                                                                              gAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgc                                                                                           >  2:196101‑M2/1‑99 (MQ=255)
                                                                                                                                                                              cggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAAt                                                                          <  1:216844‑M2/177‑1 (MQ=255)
                                                                                                                                                                                     tGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatccgctgtcccttctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctcttctctcactgccgtaaaacatggca                                                                    <  2:41605‑M2/250‑175 (MQ=255)
                                                                                                                                                                                      ggACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaa                                                                   >  2:124184‑M2/1‑75 (MQ=255)
                                                                                                                                                                                      catcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattcccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAgttt                                                                  <  1:104870‑M2/185‑1 (MQ=255)
                                                                                                                                                                                         catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACAATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAgtttgtt                                                               >  1:111125‑M2/64‑251 (MQ=255)
                                                                                                                                                                                             acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGcc                                                           >  1:44386‑M2/60‑251 (MQ=255)
                                                                                                                                                                                                             gcTCCAGCCTGTACCACCTGATGAGCCACTGGTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctacagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcaattacaccgcttct                                           <  1:30325‑M2/251‑200 (MQ=255)
                                                                                                                                                                                                                   gaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGTTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATTCCCTg                                      <  2:172128‑M2/213‑1 (MQ=255)
                                                                                                                                                                                                                     acataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGTTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTTATAATACCCTTCCg                                   >  1:36033‑M2/36‑251 (MQ=255)
                                                                                                                                                                                                                              cTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctat                                                                                                 <  1:32720‑M2/180‑146 (MQ=255)
                                                                                                                                                                                                                              cTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctat                                                                                                 >  2:32720‑M2/1‑35 (MQ=255)
                                                                                                                                                                                                                                                 cattaccCTTTGTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGTCAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATTCCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACCCACGcc       <  1:175684‑M2/244‑1 (MQ=255)
                                                                                                                                                                                                                                                      ccCTTTTTTCCATGTTGCGGGTTCCCGATCCATAGAGGGATGCGCATCAGCGGGACCGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGGGAGCTGGGAAATGTTCGTTTTTATGATGAACTGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTCTTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACACACGcctgtgg  >  1:77000‑M2/3‑248 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        
CGTTAGTGAATCTCTGCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACCCACGCCTGGTG  >  NC_000913/2665826‑2666322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.