Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	4,123,923	IS2 (–) +5 bp	coding (530‑534/1026 nt)	cytR ←	DNA‑binding transcriptional repressor CytR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4123923 =	0 (0.000)	17 (0.790)	17/488	0.3	100%	coding (534/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR
	?	NC_000913	4498181 =	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region
*	?	NC_000913	= 4123927	0 (0.000)	20 (0.920)	19/488	0.3	100%	coding (530/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR
	?	NC_000913	= 4499511	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

AGTGCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGC  >  NC_000913/4123675‑4124157                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           aGTGCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCCTCTCTTCGGGACCGGCTATACAGCCAATCCCTTTTTGCCCTTTCTCCTataaat                                                                                                                                                                                                                                           >  1:92946/1‑250 (MQ=255)  gTGCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATataaataa                                                                                                                                                                                                                                         <  1:219649/251‑1 (MQ=255)                        gCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttcc                                                                                                                                                                                                                   <  1:153143‑M1/251‑22 (MQ=255)                                  aagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgt                                                                                                                                                                                                         <  2:74131‑M1/251‑32 (MQ=255)                                    acaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGGTTGTc                                                                                                                                                                                                         >  1:157386‑M1/214‑249 (MQ=255)                                      accatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattgagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGata                                                                                                                                                                                                     >  1:175042‑M1/212‑251 (MQ=255)                                           gttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGaa                                                                                                                                                                                                 >  1:68321‑M1/207‑250 (MQ=255)                                               gCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                                                                                                            <  1:100527‑M1/251‑45 (MQ=255)                                                     aacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGcagc                                                                                                                                                                                      <  1:47436‑M1/55‑1 (MQ=255)                                                         aaGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                                                                                                                  <  2:89628‑M1/251‑55 (MQ=255)                                                                agcagcTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGACTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATAAAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaaacccgatgcc                                                                                                                                                                           >  1:177395‑M1/1‑190 (MQ=255)                                                                 cgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCcggg                                                                                                                                                                          <  2:64367‑M1/67‑2 (MQ=255)                                                                       ccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAAATGTAGGCAGCTCCAGCTACGGGGCaaa                                                                                                                                                                     <  1:157401‑M1/72‑1 (MQ=255)                                                                                 aagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCCGCTCCGGTGcaaattcgttctccc                                                                                                                                                          <  2:114136‑M1/83‑5 (MQ=255)                                                                                               cGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCCGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccacacatctgttatcactttacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccccg                                                                                                                                            >  2:39569‑M1/1‑159 (MQ=255)                                                                                                gAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGAAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCAACTCTTAGGGACCCGCTATACAGCCAATCCCTTTAAGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaaacccgctgccgcagatctttccctgacgagcgataacccagc                                                                                                                                           >  1:142179‑M1/1‑158 (MQ=255)                                                                                                 aaGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGGGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCCATCCGTTTATGCCCTTGCTCATATAAATAATtgggtttgcccctatatttccagaaatctgttatcacttaaccccatacaagcccgctgacgcagatatttccgcggcgagcgataaaccagcg                                                                                                                                          >  2:46261‑M1/1‑157 (MQ=255)                                                                                                        aGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTTCTCATATAAATAATtggattttcccctatatttccagacatctgttatcacttaacccattacaagtccccttccgcagctcttcccgttgctagcgataaccccccgcactatt                                                                                                                                   >  2:59384‑M1/1‑150 (MQ=255)                                                                                                           cGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg                                                                                                                                >  1:116023‑M1/1‑147 (MQ=255)                                                                                                                gtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTc                                                                                                                           >  1:114136‑M1/138‑251 (MQ=255)                                                                                                                            tGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGCACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCCATAAAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctggtatcacttaaaccattcaaagcccgctgccgcagatatttccgtggcgagccataaaccagccccctatgcggatgccattccttataat                                                                                                               >  2:126670‑M1/1‑130 (MQ=255)                                                                                                                                    aaCCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac                                                                                                       <  2:92946‑M1/251‑130 (MQ=255)                                                                                                                                               taagacatcaataatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtataATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCCCCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAAccc                                                                                            <  1:144855‑M1/145‑1 (MQ=255)                                                                                                                                                           catcttttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCACCAACAt                                                                                 >  2:144855‑M1/95‑250 (MQ=255)                                                                                                                                                                gttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATc                                                                           >  1:64367‑M1/90‑251 (MQ=255)                                                                                                                                                                     ccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAAt                                                                        >  1:129815‑M1/85‑249 (MQ=255)                                                                                                                                                                     ccaatgactagtctaaaaactagtattaagactatcacttagttaagttatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAAGTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAAtt                                                                       >  2:13140‑M1/85‑250 (MQ=255)                                                                                                                                                                     aTAGCCATGCAGGCGGTAGGGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAAGCCGTTTATGCCATTTCTCATAAAAATCATtggatttgcccctatatttacagacatctgttatcacttaacccattacaagccccctgccgcagatattcccgtggccagccaaaaaccagcgcacaatgcgggtgccattcgttataatgctcgaacgcctctgcaagggtctttgctgccgtttacccg                                                                      >  2:191159‑M1/1‑89 (MQ=255)                                                                                                                                                                                   aaaaactagtattaagtctatcacttatttaattgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCATCTCCGGTGCAAATTCGTTCGCCAACACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAGCCCAGCAACAGCATGCCATCAATTTGCTTGGTTATGATc                                                        >  2:135951‑M1/71‑251 (MQ=255)                                                                                                                                                                                         gACACAGCGGCATCTCTTCGCGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgttgcgagcgataacccagcgcactatgctgatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatac                                                   <  2:142179‑M1/250‑182 (MQ=255)                                                                                                                                                                                             attaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATa                                               >  2:47436‑M1/61‑250 (MQ=255)                                                                                                                                                                                              aGCGGCAACTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgt                                             <  2:140569‑M1/251‑188 (MQ=255)                                                                                                                                                                                                    aTCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcac                                       >  2:83981‑M1/1‑58 (MQ=255)                                                                                                                                                                                                                 cGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATAAAAATAATtggatttacccctatatttccagacatctgttatcacttaacccattacaagcccgctgccacagatattcccgtcgcgagcgctaacccagagcactatgcggatgccattcgttatcatgctcgaacgcccctgcaatgttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgccttatcgtttt                          >  1:213591‑M1/1‑45 (MQ=255)                                                                                                                                                                                                                  ggCTATAAAGCCAATCCGTTTAAGTCCTTGCTCATATAAATAATtggatttgcccctatatttacagacatctgttatcacttaacccattacaagcccgctgccgcagatattccagtggctagcgataacccagcgcactatgcggatgcaattcgttataatgctcgaacgcctctgcaaggttatttgctgccgttaacccgtctagtttgggcatgagactgatgtagtcacgctttatcgttttc                         >  2:186921‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                      gtacAGCAAATCAGTTTATGCCATTGATCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggatctttgctgccgttaacccgtctggtttgggcatgatactgatgtatacacgctttatcgttttcacg                      >  2:29710‑M1/2‑40 (MQ=255)                                                                                                                                                                                                                            gttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGcaca               >  2:149445‑M1/30‑251 (MQ=255)                                                                                                                                                                                                                                          cccTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgtt  >  1:149442‑M1/1‑20 (MQ=255)                                                                                                                                                                                                                                             ggggccagtctaATAAGTTACTGCATCAAATGCGGCGGTCAGATTGTCGCGATGAACGGTAGGCGGCTCCAGCTCCGGTGCAAATTCGGTCGCCATCACCATCGGCGTCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGTCAGCCGTGAACCCAGCAACATCATGCCATCTATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTGTGAGGCGCACAGTCGCCAATc     >  2:95036‑M1/13‑244 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           AGTGCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGC  >  NC_000913/4123675‑4124157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.