| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 22 (1.010) | 22/490 | 0.2 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2319850 = | 0 (0.000) | coding (27/2850 nt) | rcsC | histidine kinase RcsC | |||||
| * | ? | NC_000913 | = 2319854 | 0 (0.000) | 19 (0.870) | 17/490 | 0.3 | 100% | coding (23/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
GGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATG > NC_000913/2319608‑2320099 | agtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcttgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgcggggttatcgctcgccacgggaagatctgcggcagcgggcttgtaatgggtttagtgataacagcggtctggaaatatatgggccattccaTGTACGaaa < 2:125027‑M2/9‑1 (MQ=255) ggAAAGCACACCGTTTTCTGCCGATAAGCGCTTTTCTGGGATGTACTTCAGCTCTTTCATCTCATCAGAGGTGCGTTGAATAAAGCTCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGTATGAAAAAGCAATCAACAGCCAGAGCACTAACGCTAGTGCTCTGAACATGTAGCGCGAGGCTTGCAGGGTTGTACtagact < 2:208518‑M1/251‑7 (MQ=255) ggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTAttt > 1:76174‑M2/228‑251 (MQ=255) cGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaat > 2:182691‑M1/1‑217 (MQ=255) acgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGCAGCTCCGCCTc > 1:99439‑M2/204‑249 (MQ=255) acgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAg < 2:89847‑M2/48‑1 (MQ=255) gataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaacgaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagagcgctgggttatcgctagccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAACGAAGCAAGGCATTTCAAAGGGGCGAAGCTCCGCCTCAGGt > 1:98392‑M2/202‑251 (MQ=255) taaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTg > 2:84111‑M2/200‑250 (MQ=255) atcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAgg > 2:170647‑M2/180‑251 (MQ=255) caaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATGTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTa < 2:197619‑M2/80‑1 (MQ=255) tAAAGCGCTGAGACTGATCGGAACTCAGCTTAAATTCCTGAAGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgg > 2:103820‑M1/1‑165 (MQ=255) taacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTAcc < 2:181884‑M2/93‑1 (MQ=255) gcgcTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaaca < 2:121275‑M1/251‑91 (MQ=255) aagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTtctct < 2:223027‑M2/105‑1 (MQ=255) gttcgagcattataacgaatggcatccgcctagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGAt > 1:153072‑M2/130‑251 (MQ=255) ccgaatggcatccgcatagggcgctgggttatcgctcgccacgggaatatctgcggcagcgggattgtaatgggttaagtgataacagatttctgaaaatataggggcaaatccaTGTACGAAAAGAATCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCAATGGAGTGTGGTTAAGGTAGCGGTAAAAGCTGGTTTCCGCAATGTTCTCTCTTCTTTGGAATATGATACACCGCCGAGaaa < 2:102277‑M2/136‑1 (MQ=255) gaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGCTACACCGCCGAGAAatc > 2:114957‑M2/114‑251 (MQ=255) aTGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgat < 1:195524‑M1/200‑97 (MQ=255) aTGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgat > 2:195524‑M1/1‑104 (MQ=255) aTGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTAAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactcgtcattggagaacagatgattgatgtcttagggcaggagaaacgcagacggcgtaccacacaggaaa > 2:130315‑M1/1‑104 (MQ=255) gtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTg < 1:84111‑M2/154‑1 (MQ=255) cGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGATGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaat > 2:132892‑M1/1‑98 (MQ=255) gATGTAAAAAATGGCTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagc > 2:129976‑M1/1‑89 (MQ=255) gTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagag < 1:132892‑M1/251‑166 (MQ=255) gccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCgg > 1:185050‑M2/79‑250 (MQ=255) aaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg > 2:54981‑M1/1‑82 (MQ=255) aaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg < 1:54981‑M1/190‑109 (MQ=255) cacgggaatatttgcggcagcgggtttgtaagggtttaagtgatataagttgtctggaaatatgggggcaaatccaTGTACGAAAAAAAGCAAGGTATTTCAAAGGGGGGAAGCTCCGCCTCAGGTGACCGAAGGAGTGTGGTTAAGGTAGCGTTAAAAGCGTGTTGCCGCATTGTTCCCTCTTCTCTGGAATATGATCCACCGCCGAGAAATCATCACCTTAACCTCTGATAACCGTCATATACCGGACa < 2:171302‑M2/175‑1 (MQ=255) cGGATGAAAAAGCAATCAACGGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaac < 2:169160‑M1/251‑174 (MQ=255) cAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacgg > 2:84972‑M1/1‑66 (MQ=255) aatgggttcagtgataacagatgtctggcaatataggggaaaatccaTGTACGAAAAGAAGCAAGGTCTTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCAACTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGAATTatat > 2:157918‑M2/48‑251 (MQ=255) aaTGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaactggggatgac < 1:22662‑M1/223‑184 (MQ=255) aaTGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgac > 2:22662‑M1/1‑40 (MQ=255) gatgtctggaaatataggggcaaatccaGGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCAcgc < 1:153809‑M2/223‑1 (MQ=255) aCATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagcc > 1:44777‑M1/1‑30 (MQ=255) cATGTAGCGCGAGGCTTTCAGGGTTGTACtagactcgccccctgaatctccagacaaccaatatcacttaaataagtgataggctgaatactagttgttagactagtcattggagaccatatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaattagcgcaattgttcagcagagcattgaagcggggattacggtctcactcgttgccctgcagtatcgtgtatcagcaag < 2:140549‑M1/251‑223 (MQ=255) gaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACg > 1:150952‑M2/21‑251 (MQ=255) aaatataggggcaaatccaTGTACAAAAAGAAGAAAGGTATTACAAAGGGGCGAAGCGCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGTTAGCGGTAAAAGCGTGTTACCGCATTTTTCTCTCTTCTCGGGAATATGATACCCCGCCGAGAAATCATCACCTTAACCACTGATAATCGTCATATACCGGACAAGACGAGTGGATTTCAGCATGCATTATATGAAGTGGATGTATCCACGCCGCTTACGc < 2:153072‑M2/232‑1 (MQ=255) aatataggggcaaatccaTGTACGAAAAGAGGCAAGGTATTTCAAAGGGGCAAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTCCCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCa < 2:185050‑M2/233‑1 (MQ=255) gcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGa < 2:76174‑M2/242‑1 (MQ=255) tGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcgtaagc < 1:106735‑M1/250‑246 (MQ=255) | GGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATG > NC_000913/2319608‑2320099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |