BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,682,261	Δ34 bp	coding (1154‑1187/1287 nt)	dctA ←	C4 dicarboxylate/orotate:H(+) symporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3682261	3682294	34	32 [0]	[0] 30	dctA	C4 dicarboxylate/orotate:H(+) symporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3682260	0 (0.000)	30 (1.090)	29/486	0.1	100%	coding (1188/1287 nt)	dctA	C4 dicarboxylate/orotate:H(+) symporter
*	?	NC_000913	3682295 =	0 (0.000)	30 (1.090)	29/486	0.1	100%	coding (1153/1287 nt)	dctA	C4 dicarboxylate/orotate:H(+) symporter

GTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGATAAACACCGCCGCCATTGTCAGGTATATCGATGTGCCATCA  >  NC_000913/3682057‑3682542

tagaccgcaagaacatgaaaatgtcacggaagaagtgaaataaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTc                                                                                                                                                                                                                                             >  1:168527‑M2/239‑251 (MQ=255)

 agaccgcaagaacatgaaaatgtcacggaagaagtgaaataaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTc                                                                                                                                                                                                                                             <  1:278703‑M2/13‑1 (MQ=255)

          gaacatgaaaatgtcacggaagaagtgaaataaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAg                                                                                                                                                                                                                                   <  1:87433‑M2/23‑1 (MQ=255)

                           ggaagaagtgaaataaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGAt                                                                                                                                                                                                                  >  1:172146‑M2/212‑251 (MQ=255)

                                   tgaaataaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGcc                                                                                                                                                                                                           >  1:111843‑M2/204‑250 (MQ=255)

                                    gaaataaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGcc                                                                                                                                                                                                           >  1:274185‑M2/203‑249 (MQ=255)

                                        taaacctgaactcacccaggtggtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGAccc                                                                                                                                                                                                     >  1:202632‑M2/199‑251 (MQ=255)

                                                              gtaagttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCg                                                                                                                                                                               <  1:27950‑M2/75‑1 (MQ=255)

                                                                  gttcaggcacaggggtcaattatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGc                                                                                                                                                                              >  1:275620‑M2/173‑248 (MQ=255)

                                                                                    attatgcgcaaacacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCAc                                                                                                                                                         >  1:226792‑M2/155‑251 (MQ=255)

                                                                                               acacccgcactcggggaagggagtgcgggcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCAc                                                                                                                                              >  1:70181‑M2/144‑251 (MQ=255)

                                                                                                                           gcataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCAACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCAATACCCGTTACCCctgccgccccctaagc                                                                                                                  >  2:173998‑M2/116‑245 (MQ=255)

                                                                                                                           gcataagtgatgagattaagaggagaattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGGTACCCCTGCCGCCCCTTTaga                                                                                                                  <  2:198069‑M2/136‑1 (MQ=255)

                                                                                                                            cataagtgatgagattaagaggataattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTaga                                                                                                                  >  2:155918‑M2/115‑250 (MQ=255)

                                                                                                                                                   taattcgtgcgttttgccatccggcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgaccGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCGCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAAc                                                                                            >  2:48822‑M2/92‑249 (MQ=255)

                                                                                                                                                                   ccatccggcgcacgatttttcagcccatcgtcccgttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGTGTGATTTGGTGGACg                                                                          <  1:92289‑M2/176‑1 (MQ=255)

                                                                                                                                                                       cctgcgcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGatat                                                                      <  1:59865‑M2/180‑1 (MQ=255)

                                                                                                                                                                         ggcgcacgattatccagcacatcgtccagttttttgtgtgccagttctttcacccacttagccacgacaGCGCACGAGCTTCTGACATACAGCGGTCGATACAGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCGCTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGCTTGACGATATcc                                                                    >  2:225527‑M2/70‑251 (MQ=255)

                                                                                                                                                                            gcacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATc                                                                 >  1:178650‑M2/67‑251 (MQ=255)

                                                                                                                                                                             cacgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCt                                                                >  1:216006‑M2/66‑251 (MQ=255)

                                                                                                                                                                               cgattattcagcacatcgtccagttttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTg                                                               >  2:167907‑M2/64‑250 (MQ=255)

                                                                                                                                                                                         gcacatcgtccagttttttgtggtccagttctttcacccacttagcaactacaGCGCACGATCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCTTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTgg                                                    <  2:275620‑M2/198‑1 (MQ=255)

                                                                                                                                                                                           acatcgtacagttttttgtggtacagttctttcacccactgagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCACATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGGTTTGGTGGACGATCTCCATATGACAGTTAGTGGcc                                                  >  1:274457‑M2/52‑251 (MQ=255)

                                                                                                                                                                                                  ccagttttttgtggaccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCg                                            >  1:87574‑M2/45‑250 (MQ=255)

                                                                                                                                                                                                   gagttatttggggtccagttcttgcacccacttagcaacgacaGCGCAAGAGCTTGTGACATAAAGCGGGCGATCCCGAGGATCAGCGCCAGACCCTCTACCGGCAAATGGCCCACCGCAGAGGGCGTCGCCGCCAGCACGATAAAGCCGCTACCCTTTACCCCTGCCGCCCCTTGAGAAGAAAGCAGCAACTCGATGAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGTCCTGGGCGAt                                          <  2:117164‑M2/208‑1 (MQ=255)

                                                                                                                                                                                                     gttttttgtggtccagttctttcccccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGAGCAGCGCCAGACCCGCTCCCGGCAAATGGCCCCCCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGATaa                                        <  2:202632‑M2/210‑1 (MQ=255)

                                                                                                                                                                                                        ttttgtggtccagttctttcacccacttagcaacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGATAAac                                      <  1:229700‑M2/212‑1 (MQ=255)

                                                                                                                                                                                                                                       aacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGATAAACACCGCCGCCATTGTCAGGTATATCGATGTGcc      >  1:218525‑M2/8‑251 (MQ=255)

                                                                                                                                                                                                                                       aacgacaGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCAAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTAGCCGCCAGCACGATAAAGCCACTACCCACTACACCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAAAAGAGTGATTTGGTGGAAGATATCCATCTGACTGTTCGTGGCCTGCGAGATCAACACCGGCGCCATTGTCAGGTATATCGCTGTGcc      >  1:285232‑M2/8‑251 (MQ=255)

                                                                                                                                                                                                                                           acaGCGCACGAGTTTCTGACAAAAAGGGGTCGATCCCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGGCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAATAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCTTGGGCGATAAACACCGCCGCCATTGTCAGGTATATCGATGTGCCATCa  <  2:172146‑M2/248‑1 (MQ=255)

GTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGATAAACACCGCCGCCATTGTCAGGTATATCGATGTGCCATCA  >  NC_000913/3682057‑3682542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`