Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,123,923 IS2 (–) +5 bp coding (530‑534/1026 nt) cytR ← DNA‑binding transcriptional repressor CytR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4123923 =0 (0.000)30 (1.090) 29/488 0.1 100% coding (534/1026 nt) cytR DNA‑binding transcriptional repressor CytR
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 41239271 (0.040)40 (1.450) 39/488 0.0 97.5% coding (530/1026 nt) cytR DNA‑binding transcriptional repressor CytR
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGAT  >  NC_000913/4123678‑4124173
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                      
gcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAAtt                                                                                                                                                                                                                                                       <  1:92361‑M1/6‑1 (MQ=255)
          gagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCa                                                                                                                                                                                                                                             >  2:58214‑M1/236‑251 (MQ=255)
            aTCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGATTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATAAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGGAGTGACACAGAGGCATCTCTTCGGGACCGGCTATACAGCAAATCCGTTTCTGCCCTTGCTCATATAAATAATttgatttgccccc                                                                                                                                                                                                                                           >  1:285399‑M1/1‑238 (MQ=255)
              cacaTCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctat                                                                                                                                                                                                                                         <  1:131330‑M1/251‑16 (MQ=255)
              aataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATACTTTACTGCatcaattg                                                                                                                                                                                                                                         <  2:160860‑M1/20‑4 (MQ=255)
              aataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATg                                                                                                                                                                                                                                         <  1:110268‑M1/20‑1 (MQ=255)
                   cGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttc                                                                                                                                                                                                                                    <  1:241218‑M1/251‑21 (MQ=255)
                     ggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctggtctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGt                                                                                                                                                                                                                                  >  1:256187‑M1/225‑251 (MQ=255)
                         ggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtttggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAg                                                                                                                                                                                                                               >  2:224131‑M1/221‑250 (MQ=255)
                             gaagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACCGCGGCCTCTCTTCGGGAACGGCTATACAGCCAATCCGTTTTTGCCCTTGCTCATATAAATAATtgggttttgccctatatttcgatcggc                                                                                                                                                                                                                             >  1:152352‑M1/1‑221 (MQ=255)
                             gaagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTAGACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatattt                                                                                                                                                                                                                                     <  2:152352‑M1/240‑20 (MQ=255)
                                acaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCg                                                                                                                                                                                                                        >  1:69074‑M1/214‑250 (MQ=255)
                                      agTAGGCGGTTGTGGAAGATCAAGCAGATGCTGCATAGCTTTTCGTGCGGCTTCGAAGGGGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATGATGCCGCAGCGACGCCGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACATAGCGGCATCGCTTCGGTACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgctcctatattaccagacatctgttatcactt                                                                                                                                                                                                                 <  2:227753‑M1/251‑40 (MQ=255)
                                           ccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTa                                                                                                                                                                                                            >  2:115426‑M1/203‑251 (MQ=255)
                                             gggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggtcagtctaATAATTTACTGCATCAAATGCGGCGGTCATATTGTCGATATGAACTGTAgg                                                                                                                                                                                                          >  2:34827‑M1/201‑251 (MQ=255)
                                               gcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGca                                                                                                                                                                                                        >  2:110268‑M1/199‑251 (MQ=255)
                                                     aaGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGATGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGATCATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                                                                                                                                  <  1:57850‑M1/251‑55 (MQ=255)
                                                      aGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcactgaacccagtacaagccc                                                                                                                                                                                                 <  2:265511‑M1/251‑56 (MQ=255)
                                                          cAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATAAAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttattacttaaaccattacaagcccgctg                                                                                                                                                                                             >  1:219184‑M1/1‑192 (MQ=255)
                                                             cgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCcggg                                                                                                                                                                                          <  2:230694‑M1/67‑2 (MQ=255)
                                                                           aaaagctctgctgaacaattgcgatctgttcctgtgtgggtctccgactgcctctcttcggacctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattacgactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATCTACTGCATCAAATGCGGCGGTCAGATTGTCGACATGAACTGTAGGCGGCTCCAGTTCCGGTGCAAATTCGTTCGc                                                                                                                                                                            >  2:232451‑M1/171‑251 (MQ=255)
                                                                               tGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcg                                                                                                                                                                         <  1:153004‑M1/250‑80 (MQ=255)
                                                                                gCTTCCGGCTGCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTGCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcgcttaacccattacaagcccgctgccgcagatattcccgtggcgag                                                                                                                                                                       <  2:125678‑M1/251‑82 (MQ=255)
                                                                                ctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagcctatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATc                                                                                                                                                                        <  1:135401‑M1/85‑1 (MQ=255)
                                                                                     cGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtgggtttgcccctatatttccagacatctgttatcactttacccatttcaagcccgctgccgccgatattcccgtggcgagcgat                                                                                                                                                                   >  1:66447‑M1/1‑165 (MQ=255)
                                                                                       gCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGGTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctggcgcagatattcccgtggcgagcgataac                                                                                                                                                                >  2:169147‑M1/1‑163 (MQ=255)
                                                                                            gAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATACGTTTTTGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgctaacccagc                                                                                                                                                           >  2:91081‑M1/1‑158 (MQ=255)
                                                                                            attgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGAGATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCa                                                                                                                                                           >  2:135401‑M1/154‑251 (MQ=255)
                                                                                                      tttcctgtgtggtacgccgtctgcgtttctcctgccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggtgccagtctaATAATGGACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACg                                                                                                                                                    >  1:115223‑M1/144‑248 (MQ=255)
                                                                                                          cACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcac                                                                                                                                                                                                                   >  1:147417‑M1/1‑144 (MQ=255)
                                                                                                          cACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcac                                                                                                                                                                                                                   <  2:147417‑M1/181‑38 (MQ=255)
                                                                                                            cGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcc                                                                                                                                           <  2:8308‑M1/251‑110 (MQ=255)
                                                                                                                   tGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGGGGCATCTCTTCGGGACCGGCTATACCACCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgttgccgccgatattcccgtggcgagcgataacccagcgcactatgtggatgcccatcgtt                                                                                                                                    >  2:75832‑M1/1‑135 (MQ=255)
                                                                                                                     gccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttctttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATAGGCGGCAGATTACCCTGGTCATCAATGCTGGc                                                                                                                                  <  1:119358‑M1/123‑1 (MQ=255)
                                                                                                                         gCGGATCAACCATAAGGCCGCAGCGACGCAGCGCCTGATCATAGCCTTGCAGGCGGTAGTGTCACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggacttgcccctatatttccagacatctgttatcacttaacccattacaagccctctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataat                                                                                                                               <  2:107065‑M1/250‑122 (MQ=255)
                                                                                                                          cGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgc                                                                                                                             <  1:185041‑M1/251‑124 (MQ=255)
                                                                                                                               cAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaa                                                                                                                        <  2:48927‑M1/251‑129 (MQ=255)
                                                                                                                                 aCCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacg                                                                                                                      <  1:85812‑M1/251‑131 (MQ=255)
                                                                                                                                    ccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCt                                                                                                                   >  1:230694‑M1/114‑251 (MQ=255)
                                                                                                                                                catcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCCTCACCATCGGCGGCAAATTACGCTGTTCCTCAATGCTGGCAACAAACGGCAGCCTTTAACCCAGca                                                                                                        <  1:244732‑M1/149‑1 (MQ=255)
                                                                                                                                                 gACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACACACAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgccgatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgcacgcctctgcaaggttctt                                                                                                      >  1:44284‑M1/1‑105 (MQ=255)
                                                                                                                                                                 ccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAAttt                                                                                      >  1:37482‑M1/85‑251 (MQ=255)
                                                                                                                                                                  caatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTg                                                                                     >  2:42318‑M1/84‑251 (MQ=255)
                                                                                                                                                                  caatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCAACATCGGCGGCCGATTACGCTGTTCCTCAATGCCGGCCTCAAACGGCCGCCTTGAACCCAGCACCAACATGCCATCAatttt                                                                                     <  2:208433‑M1/168‑2 (MQ=255)
                                                                                                                                                                    gCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtct                                                                                   <  1:254327‑M1/251‑166 (MQ=255)
                                                                                                                                                                        tGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaaccccttacaagcccgctgccgcagatattcccgtggcgcgcgataaccccgcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtt                                                                               >  1:130932‑M1/1‑82 (MQ=255)
                                                                                                                                                                          cAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttg                                                                             >  2:184117‑M1/1‑80 (MQ=255)
                                                                                                                                                                               ggTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcat                                                                        <  1:268835‑M1/251‑177 (MQ=255)
                                                                                                                                                                               aaaaactagtattaagacgatcgcttatgtaagtgatattggttgtctggatattcagggggccagtctaATAATTTACTGCATCAAATGCGGCTGTCAGAGTGTCGATATGAACTGGAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCTGCCGTGAGCCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATc                                                                        >  2:59918‑M1/71‑251 (MQ=255)
                                                                                                                                                                                   actagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAAt                                                                    >  2:38745‑M1/67‑251 (MQ=255)
                                                                                                                                                                                     tagtattaagactatcccttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTTGCCTCAAACGGCAGCCTTGAACCCAGCCACAACATTCCATCAATTTtcttggtgatgataaacacg                                                                  <  1:31958‑M1/187‑8 (MQ=255)
                                                                                                                                                                                                   tctTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgct                                                    >  2:136682‑M1/1‑55 (MQ=255)
                                                                                                                                                                                                    cacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTTAACCCAGCAACAACACGCCAGCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTc                                                    >  1:97547‑M1/50‑250 (MQ=255)
                                                                                                                                                                                                      tCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgcttt                                                  >  1:20844‑M1/1‑52 (MQ=255)
                                                                                                                                                                                                      tCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgcttt                                                  <  1:169147‑M1/250‑199 (MQ=255)
                                                                                                                                                                                                        gggACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatc                                               >  2:173896‑M1/1‑50 (MQ=255)
                                                                                                                                                                                                             cGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctggtatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcggtataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtcgggtttgggcatgatactgatgtagtcacgcttgatcgtttt                                          <  2:130932‑M1/251‑207 (MQ=255)
                                                                                                                                                                                                                cTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcac                                       >  1:284090‑M1/1‑42 (MQ=255)
                                                                                                                                                                                                                cTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcac                                       >  1:226091‑M1/1‑42 (MQ=255)
                                                                                                                                                                                                                  atattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCACAACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGACTCAAACGGCAGCCTTGAACCCAGCAACAACAAGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCATGCTGATTTTGATg                                     <  1:266179‑M1/216‑1 (MQ=255)
                                                                                                                                                                                                                        gttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGcaca                               >  1:83076‑M1/30‑251 (MQ=255)
                                                                                                                                                                                                                            tCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgc                           >  1:8153‑M1/1‑30 (MQ=255)
                                                                                                                                                                                                                                  tATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattcc                     >  1:79904‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                                  gattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATc                     <  1:213678‑M1/232‑1 (MQ=255)
                                                                                                                                                                                                                                        gggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGCAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCCCCATCCGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAACCTTGAACCCAGCAACAACATGCCAACAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTTATTTTGATGCGCACAGTCGCCAATCAGCAcc               <  1:192821‑M1/238‑1 (MQ=255)
                                                                                                                                                                                                                                          tGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatttagtcacgctttatcgttttcacgaagctctctgctattccgttactct             >  2:29590‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                           ggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGGTAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGa            >  2:119358‑M1/11‑251 (MQ=255)
                                                                                                                                                                                                                                           gCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctc            <  1:134906‑M1/251‑237 (MQ=255)
                                                                                                                                                                                                                                            cTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctagaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc           >  2:626‑M1/1‑14 (MQ=255)
                                                                                                                                                                                                                                              cATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccgg         >  1:202014‑M1/1‑12 (MQ=255)
                                                                                                                                                                                                                                                    aataatTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATTAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTg    >  2:170741/1‑250 (MQ=255)
                                                                                                                                                                                                                                                     ataatTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAAGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAAAAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGATTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGttat  >  2:117533/1‑248 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                      
GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGAT  >  NC_000913/4123678‑4124173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.