| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 994,029 | G→A | L6L (CTG→TTG) | ssuB ← | aliphatic sulfonate ABC transporter ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 994,029 | 0 | G | A | 97.1% | 116.7 / ‑3.7 | 35 | coding (16/768 nt) | ssuB | aliphatic sulfonate ABC transporter ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (18/16); minor base . (1/0); total (19/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
TCCTGAAACATCATTCGCGTGTCTTCCTGAATTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAGAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCGTCAGCCACATCAGGCCCAACG > NC_000913/993782‑994270 | tCCTGAAACATCATTCGCGTGTCTTCCTGAATTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑g > 1:113822/1‑251 (MQ=255) ccTGAAACATCATTCGCGTGTCTTCCTGAATTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACAACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCACTGGTTCAAAC‑gc > 2:316880/1‑250 (MQ=255) gcgTGTCTTCCTGAATTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCg > 1:23386/1‑251 (MQ=255) cgTGTCTTCCTGAATTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGt > 2:66417/1‑251 (MQ=255) aTTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCaa > 1:165731/1‑250 (MQ=255) gtgtGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGt > 1:322846/1‑251 (MQ=255) tgtgGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGtt > 2:42426/1‑251 (MQ=255) ccTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATATGCCGGGTTCCAGCGCAACCAGAGGCGctct > 2:81271/1‑251 (MQ=255) tttCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGACACCACCGCTGCCGCCCACCACG‑GCCCCAACCGGACCTGCCGGAATATGAAAATCAAGTTGCTTCAGACCAATTTTTTCCGCGAAAGTTTTGCTTACTCCATTGTCCAAAAATGCCGTGCCCTGGTTCAAAC‑GCACA‑TAATCAATAC‑GTGGGCCTCCTTCAAATAAAAACCCGGTTCCCATGGCAACCAGGGGCCCCCTACCAGCTgcgcgc > 2:38686/1‑251 (MQ=255) agccccgcaggcggccgcAGCGGGGTTTTTTTGCCACCCCCCCGGCGCCCCCCCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACg < 1:173367/236‑1 (MQ=255) aggtgggtctttgcgcgcccctcgcgCGGCCCCCCACCCGCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGc < 2:285155/226‑1 (MQ=255) gggttACTTTTCCCCCCACCGCTGCGCCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAgg < 1:372990/247‑1 (MQ=255) ggggtcttttccccccccccGCTGCGCCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAgg < 1:66417/233‑1 (MQ=255) gTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑CACGGTGG‑CAACCTTCAAATGATAAGGAGGGTTCCAGCGGAAGTAGAGGCGCTCTACCAGCTGAGAGCTGACGTCAGCACGTTTGCCGAGCAGGGCg > 2:36393/1‑251 (MQ=255) ccccccccccGCTGCGCCCCCCCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGaa < 1:144528/243‑1 (MQ=255) ccccccTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAg < 1:291754/246‑1 (MQ=255) cccACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTaccacc > 1:20659/1‑251 (MQ=255) caccacC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACcaccac < 1:43510/251‑1 (MQ=255) accacc‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAAACAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTacacccacg > 1:28887/1‑244 (MQ=255) gACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTGTCCGCGTAATGTTTGCTTACGGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCGCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCTCAGCGTCCGTTTGCAAAAAc < 2:356462/250‑1 (MQ=255) ccGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGCATAATCGCGACTACCACCACGTCCGTTTGCAAAAACTCCcgcg > 2:18538/1‑251 (MQ=255) atatGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTc < 1:308439/251‑1 (MQ=255) atGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCAt > 1:288432/1‑251 (MQ=255) aaaTCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCGTACTGCATTGAGCAACAATTGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAAGAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGcc < 1:222556/251‑1 (MQ=255) aGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACAGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATa > 1:191320/1‑250 (MQ=255) gTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAAt > 1:315219/1‑251 (MQ=255) gTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAAt < 1:366377/251‑1 (MQ=255) cAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGcc < 1:5870/251‑1 (MQ=255) atattCCGCGTAATGTATGCTAACTGCATTGCGCAACAATGTCGTGTCCTGGTTCA‑ACAGAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGAGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAACGACTACCACCACGTCAGGTTGCAAAAACTCCAGCGCATTCATCGACAGATAACCAATGCCTGAATTgg > 2:29145/4‑250 (MQ=255) cgcgTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAAt < 2:20659/251‑1 (MQ=255) cATTGAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCg > 2:198302/1‑251 (MQ=255) gAGCAACAATGGCGTGCCCTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCGTCa < 1:36393/250‑1 (MQ=255) cGTGCCCTGGTTCCAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAGCTGCTACGCCGGGTTCCAGCGCAACCAGCGGCGCTCTACCAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCCAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCGTCAGCCACATCAGGcc > 2:150269/1‑251 (MQ=255) cccTGGTTCAAAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTGCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGATCAGGGCGTAAAGAATAATAGCGACTCCCACCACGTCCGTTTGCAAAAACTCCCGCTCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCGTCAGCCACATCAGGCCCAAc < 2:322846/251‑1 (MQ=255) ccTGGTTCAAAC‑GAGAAGGATTCA‑TACCGTGG‑CCTCCTCCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTATAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGGCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCGTCAGCCACATCAGGCCCAACg < 1:179146/251‑1 (MQ=255) | TCCTGAAACATCATTCGCGTGTCTTCCTGAATTTCAGCCAGCGGTGTGGTGCCCGCTAACACATCGCCTGCGGTTGGCGTTTCCAGACCTGCCAGCAGGCGCAGCAGGGTACTTTTGCCACCACCGCTGCGGCCCACCACC‑GCCACAAACTGACCTGCCGGAATATGTAAATCCAGTTGGTTCAGGACGATATTTTCCGCGTAATGTTTGCTTACTGCATTGAGCAACAATGGCGTGCCCTGGTTCAGAC‑GAGCAGTATTCA‑TACCGTGG‑CCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGCTCTAACAGCTGCGCGCTGACGTCAGCCAGTTTGCCGAGCAGGGCGTAAAGAATAATAGCGACTACCACCACGTCCGTTTGCAAAAACTCCCGCGCATTCATCGCCAGATAACCAATGCCTGAATTGGCAGAAATGGTTTCGGCAACAATCAGCGTCAGCCACATCAGGCCCAACG > NC_000913/993782‑994270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |