| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 512,793 | G→A | S73N (AGC→AAC) | ybaT → | putative transporter YbaT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 512,793 | 0 | G | A | 96.3% | 86.7 / ‑2.9 | 27 | coding (218/1293 nt) | ybaT | putative transporter YbaT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (15/11); minor base . (1/0); total (16/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TTTAAGGGCTGATCATGATGAACACGGAAGGTAATAACGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAGCAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGGAGCACCTTATTTTGCTCTACGCGTTGGGGATCATTGCGGTGATGACGCTTTTCAACTCCTTAAGCAACCATGCGGT > NC_000913/512562‑513033 | tttAAGGGCTGATCATGATGAACACGGAAGGTAATAACGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑CTTATCGAc > 1:185278/1‑251 (MQ=255) atgatgAACACGGAAGGGAATAAAGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCAATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGAATTGCTAATGGGAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTAGCGATGTTTTCCGGTTTTGACTATGCGCGTCTAGGGGCGAGCTCTACCCA‑CAATGGCGGC‑ATTATATACTTCTTTCTTCGCgg > 2:222784/1‑251 (MQ=255) acacGGAAGGTAATAACGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGGCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGCCTTCTTTCGTCGCGGATTAGGc > 1:114594/1‑251 (MQ=255) aaGGTAATAACGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGGTGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTCT‑CCCAACAATTGCGGCGATT‑TCGACTTTTTTCGTCTCGGGTTTGGCAACGGc > 2:113510/1‑251 (MQ=255) aGGTAATAACGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCg > 1:10301/1‑251 (MQ=255) cctgTAACAAACCCCTCGGTCTATGGAACGTCGTTTCCTTCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCg < 2:70480/248‑1 (MQ=255) cGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAAGCAACGGCGTCTTTTCGc > 1:171753/1‑251 (MQ=255) aaaCCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCTTCGCGGATTAGGCAACGGCGTCTTTTTGCTTgcgcc > 1:205632/1‑250 (MQ=255) ccTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCtctc > 1:79675/1‑251 (MQ=255) ggtagaTGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACt < 2:43682/246‑1 (MQ=255) ggTCTATGGAACGTCTTTTCCATCGGCTGTGGGGCAATGGGGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACt < 2:78803/251‑1 (MQ=255) cagtGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCa < 1:29486/248‑1 (MQ=255) gggCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCGGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGt < 1:219921/251‑1 (MQ=255) cTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTTCTGTACCTGTTGACGCTGGCGGGGAACAATGCCCGGGTCGCCCGTG‑GTTTTTgcg > 2:1208/1‑251 (MQ=255) tCGCGCTGCTGGGGCAGGCTGCTTTGCTAATGGACGCCTCGACCTGGGTCTCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGTGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTg < 2:184194/246‑1 (MQ=255) ctgGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCCTGGTCGCCCGGGGCTTTTG‑CGCTTATGCCgg > 2:69953/1‑250 (MQ=255) ctgGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGGTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGGCGCCCGTG‑CTTTTGGCGCTTATGCCgg > 1:280057/1‑250 (MQ=255) ggggCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGGGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTTTGCCgggc > 2:339622/1‑248 (MQ=255) gggCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTGCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCa < 2:33589/251‑1 (MQ=255) aGGCTGCATTGCTAATAGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGAAGTTTTACGGTTATGCCTATGCGCGTATGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGGGATCTCGTTACTGTCCCTGTTGACGCCGGCGGTGAGCATCGCCCGGGGGTCCCGTG‑GTTTTGGGGCTTATGCCGTggcgttt > 2:342914/1‑245 (MQ=255) gCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCa < 1:170171/251‑1 (MQ=255) gTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGGAGCACCTTATTTTGCTCTACGCGTTgggg < 1:285122/251‑1 (MQ=255) gATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGGAGCACCTTATTTTGCTCTACGCGTTGGGGATCATTGCgg > 1:327277/1‑251 (MQ=255) ttCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTAGGCCGTGCAGTTTTTGCATGAAGTCAGCCAGGAGGAGTACCTTATTTTGCTCTACGCGTTGGGTAACGTTGCGTtgatg < 2:54663/250‑1 (MQ=255) aTGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGGTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGTAGCTCCTTATTTTGCTCTACGCGTTGTGGATCATTGCGGTGATGACGCTTTTc < 2:151072/251‑1 (MQ=255) cgTCTGGGGGCGAGCTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCCGTTTTTGCCTGAAGGCAGCCAAGAGGAGCACCTTATTTTGCTCTACGCGTTGGGGGTCATTGCGGTGGTGACGCTTTTCAACTCCTTa > 2:95811/1‑249 (MQ=255) cTAT‑CCCAACAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGGAGCACCTTATTTTGCTCTACGCGTTGGGGATCATTGCGGTGATGACGCTTTTCAACTCCTTAAGCAACCATGCGGt > 1:37298/1‑249 (MQ=255) | TTTAAGGGCTGATCATGATGAACACGGAAGGTAATAACGGTAACAAACCTCTCGGTCTATGGAACGTCGTTTCCATCGGCATTGGGGCAATGGTGGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCATTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCGGTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTAT‑CCCAGCAATGGCGGC‑ATTATCGACTTCTTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGCCATGGTCGCCCGTG‑CTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGGAGCACCTTATTTTGCTCTACGCGTTGGGGATCATTGCGGTGATGACGCTTTTCAACTCCTTAAGCAACCATGCGGT > NC_000913/512562‑513033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |