Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,004,762	C→T	A297A (GCC→GCT)	fliD →	flagellar filament capping protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,004,762	0	C	T	100.0%	181.6 / NA	51	A297A (GCC→GCT)	fliD	flagellar filament capping protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (18/33);  total (18/33)

CGGTTGCCGCCCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGAAAAAAGATGCCAGCGGCGTAGGTGC  >  NC_000913/2004527‑2004995                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                          cGGTTGCCGCCCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGGCGCTAACCATCACTCAGGACACCTCCAAAGCGCAATCGGCGATGAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGa                                                                                                                                                                                                                               <  1:361462/248‑1 (MQ=255) cGGTTGCCGCCCAGAAGGCGCAGCTGACAGGCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCggtag                                                                                                                                                                                                                              <  2:10792/249‑4 (MQ=255)           ccAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGcc                                                                                                                                                                                                                     >  1:310317/1‑248 (MQ=255)           ccAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCaga                                                                                                                                                                                                                  <  2:230020/251‑1 (MQ=255)              gAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGtt                                                                                                                                                                                                               <  1:10236/251‑1 (MQ=255)                aTGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCt                                                                                                                                                                                                             <  1:241908/251‑1 (MQ=255)                      aGCTGACAGTCACCAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAAt                                                                                                                                                                                                       >  2:45240/1‑251 (MQ=255)                                  acaacGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTc                                                                                                                                                                                           <  1:126084/251‑1 (MQ=255)                                  acaacGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTc                                                                                                                                                                                           <  1:41793/251‑1 (MQ=255)                                          gaaaTCGAGAACAGAAGCAATAACATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTc                                                                                                                                                                                   >  1:76833/4‑251 (MQ=255)                                               cGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGc                                                                                                                                                                              <  2:129779/251‑1 (MQ=255)                                                      agcagcAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGAc                                                                                                                                                                       <  2:143653/251‑1 (MQ=255)                                                          gcaACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCGGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGAtt                                                                                                                                                                   <  2:34955/251‑1 (MQ=255)                                                             acacCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTc                                                                                                                                                                  >  1:364726/1‑249 (MQ=255)                                                                  aTCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCCCCGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATTCCGACAACTCGCTAATAGATACCTTCAGCAGCCTGTCCAAATACACCGCTGTAGAGGCGGGAGCTGAGAGCCAGAGTTCTAGCAATGGTGCACTTCTCGGCGACTCCACGCTGCGGACGATTCattcgca                                                                                                                                                           <  2:251346/251‑7 (MQ=255)                                                                  aTCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCa                                                                                                                                                           <  2:76833/251‑1 (MQ=255)                                                                                 gAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCt                                                                                                                                            >  1:131674/1‑251 (MQ=255)                                                                                 gAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCt                                                                                                                                            >  1:298366/1‑251 (MQ=255)                                                                                         cgcccTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATa                                                                                                                                    <  2:211480/249‑1 (MQ=255)                                                                                          aCCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATAc                                                                                                                                   >  2:222140/1‑251 (MQ=255)                                                                                                        cGATATCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTcc                                                                                                                      >  1:5142/1‑250 (MQ=255)                                                                                                         gATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACGGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTTCGGGCGATTGAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAg                                                                                                                    <  1:233549/251‑1 (MQ=255)                                                                                                            gTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCt                                                                                                                  <  2:110705/250‑1 (MQ=255)                                                                                                                 cacGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTACAGACTGGGTGAATGCCTACAACTAGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATaaa                                                                                                             >  1:335664/1‑250 (MQ=255)                                                                                                                              aCGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGAt                                                                                               <  1:197970/251‑1 (MQ=255)                                                                                                                                   aaCCATCACTCAGGACACCGCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTGCCAGCTATGAAACGTTGGCGCAGATTGGt                                                                                           <  2:370095/250‑1 (MQ=255)                                                                                                                                       aTCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCAc                                                                                      <  1:88763/251‑1 (MQ=255)                                                                                                                                       aTCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCAc                                                                                      >  2:149678/1‑251 (MQ=255)                                                                                                                                         cACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACg                                                                                     >  2:126722/1‑250 (MQ=255)                                                                                                                                              aGGACACCTCCAAAGCGCAACAGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGAGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAg                                                                                                                                         >  2:363517/1‑193 (MQ=255)                                                                                                                                              aGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTGCTAGCAATGGTGCACTGCTCTGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAg                                                                                                                                         <  1:363517/193‑1 (MQ=255)                                                                                                                                                  cacCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCa                                                                           <  2:592/251‑1 (MQ=255)                                                                                                                                                       ccAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGAt                                                                      <  1:291371/251‑1 (MQ=255)                                                                                                                                                        cAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATg                                                                     <  2:70691/251‑1 (MQ=255)                                                                                                                                                         aaaGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATgg                                                                    <  1:45240/251‑1 (MQ=255)                                                                                                                                                                aaaCGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAaactg                                                             <  2:310317/251‑1 (MQ=255)                                                                                                                                                                     gCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAaactggaact                                                        <  1:140341/251‑1 (MQ=255)                                                                                                                                                                      cGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGAGACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCAGTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGGGCAGATTGGTATCACGACCGATCCCAGCGATGGCAaactggaactg                                                       <  1:341661/251‑1 (MQ=255)                                                                                                                                                                          tAAAGAATGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCAAGCTATAAAAAGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATg                                                   >  2:251784/1‑251 (MQ=255)                                                                                                                                                                           aaaGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGc                                                  <  2:364726/251‑1 (MQ=255)                                                                                                                                                                               aCTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGTTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGAc                                              <  1:239498/251‑1 (MQ=255)                                                                                                                                                                                    gTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACt                                         <  1:227028/251‑1 (MQ=255)                                                                                                                                                                                        aTGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCAcc                                     <  2:182482/251‑1 (MQ=255)                                                                                                                                                                                              aCAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCa                               <  2:77096/251‑1 (MQ=255)                                                                                                                                                                                                   tCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGa                           >  1:253647/1‑250 (MQ=255)                                                                                                                                                                                                         aTAGATACCTTCAGCAGCCTGACCAAATACCCCGCTGTCGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGaaaac                       >  1:336056/1‑247 (MQ=255)                                                                                                                                                                                                                    cagcagCCTGACCCAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGAAAAAAGATGCCAgcggcg         >  2:357514/1‑251 (MQ=255)                                                                                                                                                                                                                    cagcagCCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGAAAAAAGATGCCAgcggc          <  1:164998/250‑1 (MQ=255)                                                                                                                                                                                                                       cagcCTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGAAAAAAGATGCCAGCGGCGt        >  1:213517/1‑249 (MQ=255)                                                                                                                                                                                                                          ccTGACCAAATACACCGCTGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCCCCGCTGCACTGAAAAAAGATGCCAGCTGCGTAGGTg   <  1:203216/251‑1 (MQ=255)                                                                                                                                                                                                                            tGACCAAATAAACCGCTGTAGATGCGGGAGCTCATAGCCCGAGTTCTAGCAATGGTGCACTGCTCGGCGACACCACTATGCGGACGATTCAGCAGCAGTTGAAATCGATGCTGAGTACTACCGTCAGTTATTCCAGCTATAACACCGTGGCGCAGATTGGAATCACGACCGATCCCAACGCTGGCAAAATGGAACTGGATACCAACAACCTAACCGCTGCACTGAAAACAGCTGCCAGCGGCGtcggggc  >  2:193327/1‑244 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                          CGGTTGCCGCCCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACCATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTACAACTCGCTAATAGATACCTTCAGCAGCCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGTGCACTGCTCGGCGACTCCACGCTGCGGACGATTCAGACGCAGTTGAAATCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGTTGGCGCAGATTGGTATCACGACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGAAAAAAGATGCCAGCGGCGTAGGTGC  >  NC_000913/2004527‑2004995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑