| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 382179 = | NA (NA) | 27 (0.740) | 24/488 | 0.6 | NA | noncoding (920/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/382425‑382179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGG < NC_000913/382590‑382352 GGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGA < 2:283432/251‑1 CATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTCTTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCC > 1:223908/1‑251 CATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTATTTCATTAGCCCGGTAGCATGTACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCC > 1:136181/1‑251 TGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTTCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTt > 2:338446/1‑250 TGATACTGATGTAGGCACGCTTTATCGTTTTCACCAAGCTCTCTGCTATTCCGTTACTCTCCGGAATCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGATGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGACCTGTACTGTTTCACTGGttaaccccccg > 2:363753/1‑240 CACGCTTTATCGTTTTCACGAAGCTCTCTGCTACTCCGTTACTCTACGGACCCCGAACCGCCGTGCTCTTCGGTTCAAGTCCCGAAC‑TCCCGGCGAACTGGCGTGTTTCCATACCCCCGTAGCCTGAACCATTATCCGTAACCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCT > 1:339980/1‑251 CGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACT < 1:143244/250‑1 TCTCTGCTATTCCGTTACTCTCCGGACTCCACACCGCCGAGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCCTGAACCATTATCCGTAAGCCCCTACACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCAAGCATGACGTCCTGAACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCCTTAC‑AAGC > 1:37768/1‑251 CTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTATCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATT < 1:340495/249‑1 CCGGACTCCCCACCGCCGTGTTCTTCGGTTCAAGTACC‑AACACCCGGGCTAACTGGCGTGTTTCATTAGCCCGGGAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCGCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCAATTAC‑AAGCCCGCTGCCGCAGATATTCCC < 1:56226/250‑1 accgaACCGCCGTGTTCTTCGGTTCAAGTCCC‑ACCATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGACGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGA < 1:35404/246‑1 CGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGTTTTGCCCCTATCTGTGCCGGCCTCTGTTAGTACTTAACGCATTCCGCAGCC‑GCTGCCGCAGGTATTACCGTGGCtcgc > 1:181957/1‑247 CGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTACCCATGCGGACTTCAACCGCTCCCCGCATTACGTCCTGCACTGTTTCACTTGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCTTGGCGAGCGATA > 1:204921/1‑250 CGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGGAGGAGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTTTTTCACCGGATTTGCCCTTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACT > 1:298817/1‑250 CGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGGTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCGGATATTGCCAGACATCTGTTAGCACGTAGCCCATTAC‑AAGGCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACG < 1:28292/251‑1 CATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAACCCGCTGCCGCAGATATTCCCGTGGCGCGCGATGACCTCGCGCACTATGCGGATGCCGTTCGTTATACTGCTCGAACGGCTCTGC > 1:241382/1‑251 GGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGAGTTGCCCCTATATTTCAAGGCATCTGTTATCACTTAACCCATTCA‑AAGCTCGCTGCCGCAGATATTCCCGTGGCTAGCGATGACCCAGCGCAATATGTGGATGCCATTCGTTATAATGCGCGAACGCCTCTGTAAGGTTCTT > 1:113672/1‑251 ATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCG < 1:338446/251‑1 ATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGAGTAGCCCCTATATTTCAAGACATCTGTTATCACTTAACCCATAAC‑AAGCCCGCTGCCGAAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTCTCATGCTCGAACGCCTCTGCAAGGCTCTTTGCTGCCGTTAACCCG > 1:315330/1‑251 AGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTT > 1:172889/1‑251 CACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTGC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGG < 1:1490/251‑1 CACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCTATACCCCAGCGCTCTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGG < 1:113981/251‑1 AAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTGTCACGGGATTTTCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCTGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGTTGCCGTTAACCCGTCTGGGTTGGTCATGATACTGATGTAGTCACGCTTTATCGTTT < 2:223908/251‑1 CCCAGCATGACGTCCTGTACTGTTTCACTGGATATGCCCCTGTATTTCCAGACATCTGTTATCACTTCACCCATTAC‑AAGCTCGCTGCCGCAGATATCCCCGAGGCGCGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATACTGCTCGAACGCCTCTGCACGGGTCTTTGCTGCCGTTAACCCGCCTGGTTCGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCT > 2:192605/1‑250 GCATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGCTAACCCAGCGCACTATGCGGATGCCATTAGTTATAATGCTCGAACGCCTCTGCAAGGCTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGTAGCTCTCTGCTATTCC > 2:311477/1‑251 ATGACGTCCTGTACTGTTTCACTGGATTTGCCCCTATATGACCAGACATCTGTTATCACTGAACCCATTAC‑AAGCCCGCTGCCGCAGATAGTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCGGCATGGTTCTTGGCGGCCGTTAACCCGTCTGGTATGGGCATGATACTGATGTACTCACGCTGTATCGTTGGCACGAAGCTCTTGGCTATTCCGT < 2:37768/251‑1 GTACTGTTTCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGG > 2:347996/1‑251 GGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCC‑AACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/382425‑382179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC‑AAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGG < NC_000913/382590‑382352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |