| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,363 | 0 | C | . | 93.3% | 121.2 / 0.0 | 30 | intergenic (‑490/+919) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base . (14/14); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
| * | NC_000913 | 2,173,364 | 0 | C | . | 96.5% | 119.2 / ‑2.2 | 30 | intergenic (‑491/+918) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base . (14/14); minor base A (0/1); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGG > NC_000913/2173126‑2173609 || ttAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTccc > 1:344217/1‑249 (MQ=255) gtgtGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAAGGATGACCCCCGAGATTAAGGTGCG‑AAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATc < 2:288585/251‑1 (MQ=255) gCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAgg < 1:327800/251‑1 (MQ=255) gCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAgg < 1:356828/251‑1 (MQ=255) aaaCCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GCACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACCCCGGATCAAGGcc > 2:24060/1‑251 (MQ=255) aGTTTGCGTGGCTATCCACAGG‑TGAATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCCCGATGCACGGCGACCGCCATCGCCACAAAGAAGCCGAGGGTGGCAAGATCGCGAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg < 2:267018/250‑1 (MQ=255) gcgATCCACAGGGTGA‑TGCTCATAATGATGACACCTGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAcc > 2:127872/1‑251 (MQ=255) gATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc > 1:886/1‑251 (MQ=255) acaGGGTGA‑TGCTCATAAGGAGGACACCCGAGATAAAGGTGCG‑GAACAGATGTCCACGAGGAACGGGGACCGCCATCGCCAAGAAGAAGCCGATGGGGGAAAGATCGCAAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAAGTAAAATGGTG‑AGGGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCAGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAAc < 2:132912/251‑1 (MQ=255) gggTGT‑TGCCCATAATTATGACCCCCGAGATTAAGGTGCG‑GAACAGTTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCTCCTGATTACCCGGCACACAAACAGCAATTAAAATGTTG‑AGTGGGATAAAAATCAGGCTTGCC‑GAGACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCTGATCAAGGCCAATCAGGAACGCCTGACCGCCGAACTTc < 1:355332/251‑1 (MQ=255) caaaaTGATGACCCCCGCGTTTAAGG‑GCGAGAACAGATTCCCGCGATTCACGGCGCCCCCCATCGCCACAAAGAAGCCGTTGGTGGCAAGACCGCAAACCGGCAGCACCTGATTCCCCGCCACACAAAAAGCAATAAAAATGGTG‑AGGGGGATAAAAACCAGCTTTGCC‑GATCCCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc < 2:45449/248‑1 (MQ=255) tAATGATGACACACGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATAAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaaa > 1:77271/1‑248 (MQ=255) atgatgACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACt > 1:90778/1‑251 (MQ=255) tgatgaCACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCCACGCCGGCTCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACt > 2:290616/1‑250 (MQ=255) gagaTTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCtt > 1:329662/1‑251 (MQ=255) aaGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt > 2:323601/1‑251 (MQ=255) ggaaaCAGATTTCCACGAGGCACGCCGCCCGCCATCGCCACGAAGAAGCCGATGGGGGAAAGACCGCCAAACGGCAGCACCTGATTCCCCGGCCCACAAACAGCAATAAAAATGGTG‑ATTGGGAAAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGGCCGCCGAACTTCGCCTGTAAACGACTTCGAGCCTGCTTAGCGATGGGCGt < 2:55465/248‑1 (MQ=255) tttCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccatc > 2:268345/1‑251 (MQ=255) tCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccatcc > 1:85208/1‑250 (MQ=255) cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg < 1:357504/251‑1 (MQ=255) gggggccgcccATCGCCACAAAGAGGCCGATGGGGGAAAGATCGCAAAGCGGCAGCACCTGATTACCCGGCACAAAAACAGCAATAAAAATGGTA‑GGGGGGAAAAAAATCAGGCTGGCG‑TATTCCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGTCTACGAGCCTGCTTAGCGATGTGCGTTAACCCATCCATGATGGGTTTa < 2:46002/242‑1 (MQ=255) gACCGCCATCGCCACGAAGAAGCCGATGGTGGAAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAAGGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCa < 1:345057/251‑1 (MQ=255) gaagaaGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTCAACCATCCATGATGGGTTTAATCACCCGTGGCATTagc > 2:102323/1‑250 (MQ=255) accGCCAACCGGCAGCACCTAATTCCCCGGCACAAAAACAGCA‑TTAAAAAGGTGGAGGGGAAAAAAAACCGGGCTTCCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGGTAAACCAGCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTa < 2:344217/249‑1 (MQ=255) ttACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCttt > 1:72172/1‑251 (MQ=255) tACCGGGCACAAAAACAGCAATTAAAAGGGTG‑AGTGGGAAAAAAATAAGGTTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCttt < 1:290616/250‑1 (MQ=255) tACCCGCCACAAAAACAGAAATAAAAATGGTA‑GGTGGAAAAAAAATAAGGCTTGCC‑‑AAACC‑CACAGCCGTATGTCCCAGCAGCAACGCCGGATAAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCGGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCGCCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCttt < 2:14964/250‑1 (MQ=255) gCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCg > 1:296630/1‑251 (MQ=255) gggggagggggAAAAAAATC‑GGGTTGCCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATa < 2:271589/243‑1 (MQ=255) ggaaaaaaataagggCTGGCC‑GATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCAAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGccc < 2:167831/238‑1 (MQ=255) caaccccaccgccgTTGGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGGGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGa < 2:281041/243‑1 (MQ=255) accaccgccgTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAgg > 1:269374/5‑251 (MQ=255) || TTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGA‑TGCTCATAATGATGACACCCGAGATTAAGGTGCG‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTG‑AGTGGGATAAAAATCAGGCTTGCC‑GATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGG > NC_000913/2173126‑2173609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |