| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,652,331 | 0 | T | C | 95.7% | 73.9 / ‑6.0 | 23 | intergenic (+2346/+397) | ydfD/ynfP | lysis protein/protein YnfP |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (13/9); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCC > NC_000913/1652109‑1652571 | ggAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTGATTCATCTTATTAAGCCAGCAATCGGCGCGCTCCGGAGTCAGA‑TGACATTAACGAGACGGAGCAAAGAGCA‑TATCATGGATGG‑TCACCTCATAGTGTTTGGCAGAACAGAAAAACa < 2:185069/251‑1 (MQ=255) gTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTCATTCATCTTAGTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACTAAAATGCACCttt < 2:218557/251‑1 (MQ=255) tGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAA‑CGGGGCCATCATCTTATTTAGCCCGCAATCGACGCCCTCCCGAGGCAGA‑TGACCTTTACGAGACTGAGCAAAAAGCA‑TATCATTTATTT‑TTACCTCCTAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTTTTTTTTCACCTGAAGTTTCATCGAGAGGAAAAAATTATGGTg > 2:228/1‑251 (MQ=255) gAACAATGATGATCAGGAGAAATTTAGCAAACGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CCGGTCATTCATCCTATTAAGCCAGCAATCCACGCTCTCCGGAGTCAGA‑TGACCTTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCCACCTGAAGTGTCAGCGAGAGGAAAAAATTATGGTGAc > 1:244161/1‑251 (MQ=255) cAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGCACCAAT‑CGGGTCATTCATCTTTTTAAGCCAGCAAACGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGCGCAAAGAGCA‑TATCATTGATGT‑TCAACTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCAt > 1:320166/1‑251 (MQ=255) cAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGttt < 1:28456/207‑1 (MQ=255) cAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGGATGGCAGAACAGAAAAACAAAAATGCACCTTTGttt > 2:28456/1‑207 (MQ=255) aaTGATGAACAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGGACCAATACGGG‑CCTTCATCCTATTAAACCAGCAAACGCCGCTCTCCGGAGTCAGA‑TGACATTTACGAGACTGCGCAAAAAAAA‑TCACATTGATGT‑TCACCTCAGAGAGGATGGCAGAACAGAAAAAAAAAAAAGAAACTTTTGTTTTCAACCTGGAGTGGCAGCGAGAGAAAAAAAATATGGTGAccctt > 2:194375/1‑248 (MQ=255) actttagaacaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAATCAAA‑CGGGGCATTCATCTTATTAAGACAGCAAACGACACTGTCCGGAGACAGAATCA‑ATTAACGAGACTGAGCCAAGAGCAATAT‑ATTGATGTGTAACT‑CAGAGAGTATGGTCGAACAGAAAAAAAAAAATGCACCTTTGTTTTTCAACATGAAGTGTAAGCGGGAGAAAAAACATATGGTGACAATTTTACCGttaacctaa > 2:229440/11‑243 (MQ=255) aGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGcagaacaga < 1:149660/156‑1 (MQ=255) aGACCGTTTCACGGTACCAAAAACACAGGCGGGAAACAAT‑TGGGGCATTCATCTTTTTAAGCCACCAATCGAGGCCCTCCGGAGGCCGA‑TGACATTAACGAGACTGAGCAAAAAGCA‑AATCATTTATGT‑TCACCTCAGAGGGTATGGccgaaaaga > 2:149660/1‑156 (MQ=255) aaCACAGGCGGGAACCAAT‑CGGGTCATTCCTCTTATTAAGCCAGCAATCGACGCTCTCCGGAGGCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAACGGGAGTAAAAAATTATGGGGACCCTTTTACCGTTGACTCAATAAGGAAGGTGTTGGACGCAGCGaaaaaa > 1:300881/1‑247 (MQ=255) cGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGAAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGCGGGACGCAGCGATAAAACGTGCCGGCCTCCGCCATCGaa > 2:323340/1‑250 (MQ=255) tcattcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATc > 2:68040/1‑250 (MQ=255) attcatCGTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCata < 2:305895/251‑1 (MQ=255) ccAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAAt > 1:23141/1‑150 (MQ=255) aaTCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACaaa > 1:362898/1‑98 (MQ=255) aaTCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACaaa < 2:362898/98‑1 (MQ=255) aTCGACGCTCTCCGAAGTCAGA‑TGACATTAACGACACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGc > 2:56520/1‑251 (MQ=255) gCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCctgctg > 1:212234/1‑251 (MQ=255) gTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACa < 1:9084/251‑1 (MQ=255) gA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTg < 2:251549/251‑1 (MQ=255) gATGT‑TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGcc < 1:194375/250‑1 (MQ=255) | GGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAT‑CGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA‑TGACATTAACGAGACTGAGCAAAGAGCA‑TATCATTGATGT‑TCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCC > NC_000913/1652109‑1652571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |