| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 849,617 | C→T | A161T (GCT→ACT) | rhtA ← | L‑threonine/L‑homoserine exporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 849,617 | 0 | C | T | 90.0% | 54.2 / ‑3.2 | 20 | A161T (GCT→ACT) | rhtA | L‑threonine/L‑homoserine exporter |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (14/4); total (14/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.89e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCAGCGCCACCGCAATACCCAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCA > NC_000913/849403‑849852 | cGGGGGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTACTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCACCAGTGTCAGAGCACAgtc > 1:305960/1‑249 (MQ=255) ggTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAGATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCgg < 2:289183/251‑1 (MQ=255) gAATAAGGCAGCGCGGTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGACAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTc > 2:178427/1‑251 (MQ=255) gTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcccc < 1:335805/243‑1 (MQ=255) gTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcccc > 2:335805/1‑243 (MQ=255) aGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGCAGCAGGACCcac > 2:251121/1‑250 (MQ=255) aCAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGcac > 1:44525/1‑193 (MQ=255) aCAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGcac < 2:44525/193‑1 (MQ=255) gAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGcac > 2:139090/1‑250 (MQ=255) cAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTg < 2:88972/191‑1 (MQ=255) cAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTg > 1:88972/1‑191 (MQ=255) ccccAGCCGGAACCGCTCCAATTGACACGAAA‑TTACCCGCTGAACACACCGAACAAATTGCCACCGCCGCAGGCCCGTGTCCCGCCCCCGCGCGTTGCCCACTAAAAATGTAAATAGCCCAA‑AAGCCCCCGCCCCCCAGGCCCAGCCCCCAGCCGGTTAAACGGACAGGGAAAACGGCTTCCCCCAGGGGGAGCAGGAACCACAAACAAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGcgacga < 2:338681/249‑1 (MQ=255) ccagccagAAGCGCTCCAATGGGCACAAAAATGAAC‑GCGGCAACAAACGAACAAAGTCCCACCGTCGCGGGGCCTTTTCCCGCCCCGGCGCGTTGCCCACTAAAAAGGAAAATGGCCCAACAAGCCCC‑GCCCCCCAGGCCCAGCCCACGGCCGGTTAAACCGACAGGGGAAACGTCTCCCCCCGGCGGTAGCAGAACCCACAGACAAAAAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACgaga < 2:13070/251‑1 (MQ=255) tAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTg > 1:170715/1‑250 (MQ=255) ccAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCAGCGCCACCGCAAt > 1:365763/1‑251 (MQ=255) gCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCAGCGCCACCGCAATAccc > 1:184589/1‑249 (MQ=255) aGGGCCATGTTCCGCTCCTGCGCGTTGCCCCCTTAAAATGTAACTAGTCCAACACGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCAGCGCCACCGCAATACCCAGCGGTACTGTCt > 1:45598/1‑251 (MQ=255) ccTGCGCGTTGCCCACTTAACATGTAAATAGTCCACCAATCCCC‑TGCCCCCAGTGCCCGCGCACAGCCGGTTAAATCGACATGGGCAACGTCTTGCCCCAGCGGTAGCCGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTCCCGGGCGACGCGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCATCGCCACCGCACTACCCCGCGGTACTGTCTGAATAgcacgataca > 2:148448/1‑241 (MQ=255) tGCCCACTTAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAgcgc > 2:76937/1‑170 (MQ=255) ttAAAATGTAAATAGTCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCAGCGCCACCGCAATACCCAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATcccc > 2:322271/1‑250 (MQ=255) | CGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGCGACAGCCAGACCCAATGGAATAACCGACCAGTGCCAGAGTGCTTCACCAGCCTGAAGCGCTCCAATTGGCACGAAAATTAAC‑GCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCC‑GGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCAGACGAAATCTACCGGGCGACGAGAAGAGAACAGCGCCACCGCCAGTGGTCCGGTGAACTCCAGCGCCACCGCAATACCCAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCA > NC_000913/849403‑849852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |