Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,123,923 IS2 (–) +5 bp coding (530‑534/1026 nt) cytR ← DNA‑binding transcriptional repressor CytR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4123923 =0 (0.000)43 (1.110) 40/472 0.2 100% coding (534/1026 nt) cytR DNA‑binding transcriptional repressor CytR
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 41239270 (0.000)38 (0.980) 33/472 0.3 100% coding (530/1026 nt) cytR DNA‑binding transcriptional repressor CytR
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

CGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTG  >  NC_000913/4123679‑4124176
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         
cttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAAttt                                                                                                                                                                                                                                                         <  1:357485‑M1/7‑1 (MQ=255)
    cgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTg                                                                                                                                                                                                                                                     >  1:46394‑M1/241‑251 (MQ=255)
             cacaTCGCTATTGCTGAAGACCGCAGTAGGCGGTTGTGGAAGATCATGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGCCGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCGCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgtcccta                                                                                                                                                                                                                                             <  2:261669‑M1/250‑15 (MQ=255)
                aactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATgcgg                                                                                                                                                                                                                                         >  2:29524‑M1/229‑251 (MQ=255)
                      aTGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccag                                                                                                                                                                                                                                    <  2:102471‑M1/250‑24 (MQ=255)
                          cAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatc                                                                                                                                                                                                                               <  1:339527‑M1/251‑29 (MQ=255)
                           agaagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatct                                                                                                                                                                                                                              >  1:94421‑M1/1‑222 (MQ=255)
                           agaagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGGAGTGGCACAGCGGCCTCTCTTCGGGGCCGGCTATACAGCCCATCCCGTTATGGCCTTGCCCCTTTAAATAATtggaatttcccctatatttccagaaatct                                                                                                                                                                                                                              >  2:194483‑M1/1‑222 (MQ=255)
                             ctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTc                                                                                                                                                                                                                            <  1:253173‑M1/36‑1 (MQ=255)
                               acaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGa                                                                                                                                                                                                                          >  2:325309‑M1/214‑251 (MQ=255)
                                    cagTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCCTATAAATAATtggatttgcccctatatttccagacatctgttatcact                                                                                                                                                                                                                     >  2:128125‑M1/1‑213 (MQ=255)
                                    cagTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgtccctatatttccagacatttgttatcact                                                                                                                                                                                                                     >  1:221018‑M1/1‑213 (MQ=255)
                                    cagTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcact                                                                                                                                                                                                                     <  1:119623‑M1/251‑39 (MQ=255)
                                      gttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGaa                                                                                                                                                                                                                    <  2:4131‑M1/44‑1 (MQ=255)
                                        aGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaac                                                                                                                                                                                                                 >  1:161468‑M1/1‑209 (MQ=255)
                                         ggCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATTATtggatttgcccctatctttccagacatctgttatcacttaacc                                                                                                                                                                                                                >  1:224107‑M1/1‑208 (MQ=255)
                                           cGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                                                                                                                              <  1:296834‑M1/251‑46 (MQ=255)
                                           cGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                                                                                                                              <  1:40401‑M1/251‑46 (MQ=255)
                                                gtgGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattaca                                                                                                                                                                                                         <  2:94421‑M1/251‑51 (MQ=255)
                                                  cgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGGTATGAACTGTAGGcagctc                                                                                                                                                                                                       <  2:268250‑M1/57‑1 (MQ=255)
                                                          aaGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc                                                                                                                                                                                               <  2:352733‑M1/251‑61 (MQ=255)
                                                           ccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCAGCAAGTGCGGCGGTCAGATTGGCGATAGGAACTGTAGGCAGCTCCAGCTCCgg                                                                                                                                                                                              >  2:237739‑M1/186‑251 (MQ=255)
                                                                      cATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCCATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcc                                                                                                                                                                                   >  2:29784‑M1/1‑179 (MQ=255)
                                                                                     ggCTTCGAAGGAGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgcta                                                                                                                                                                     >  1:175225‑M1/1‑164 (MQ=255)
                                                                                           gAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagc                                                                                                                                                              >  2:258044‑M1/1‑158 (MQ=255)
                                                                                                     tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTAc                                                                                                                                                        >  1:4131‑M1/144‑247 (MQ=255)
                                                                                                     tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTg                                                                                                                                                    <  1:145712‑M1/108‑1 (MQ=255)
                                                                                                        cctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGtt                                                                                                                                                  >  2:357485‑M1/141‑250 (MQ=255)
                                                                                                        cctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGtt                                                                                                                                                  >  2:15686‑M1/141‑250 (MQ=255)
                                                                                                                 aTGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccccgcgcactatgcggatgccattcgt                                                                                                                                        >  2:167537‑M1/1‑136 (MQ=255)
                                                                                                                  ggtATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtt                                                                                                                                       <  2:293734‑M1/250‑117 (MQ=255)
                                                                                                                                     aaTGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgtatgccattcgttataatgctcgaacgcctct                                                                                                                    <  2:175225‑M1/251‑136 (MQ=255)
                                                                                                                                        gCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                                 <  1:128125‑M1/251‑139 (MQ=255)
                                                                                                                                              acatcaatcatctgttctccaattactagtctaacaactagaattaagaatatcacttatttaagtgatattggttgtctggagattcagtgggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATTAACTGTAGGCAACTCCAGCTCCGGTGCAAATTCGTTCGTCATCACCATCGGCGGCAAATTACGCTGTTCCTCAATTCTGGCATCAAAAGGCAGCCTTGAACccaac                                                                                                            <  1:178401‑M1/148‑3 (MQ=255)
                                                                                                                                                 aCGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttcttt                                                                                                        <  1:79300‑M1/251‑148 (MQ=255)
                                                                                                                                                   gCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgc                                                                                                      >  1:66631‑M1/1‑102 (MQ=255)
                                                                                                                                                     aGCGCCTGATCATAGCCTTGCAGGCGGTAGCGACACAGCGGCATCTCTTTGGGACCGGCTATACACGCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttttcacttaacccattacaagcccgctgccgcatatattcccctggcgagcgaataaccagctcactatgcggctgccattcgttataaagctcgaacgcctcttcaaggttctttggtg                                                                                                    >  2:83048‑M1/1‑100 (MQ=255)
                                                                                                                                                        tctgttctccaatgactagtctaaaaactagtattaagactatcacttatttacgtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTTTAGGCCGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATTCAACGGCCGCCTTTAACCCAGCAACACCATGcc                                                                                                 <  2:186283‑M1/159‑1 (MQ=255)
                                                                                                                                                          tgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCAt                                                                                               <  1:330722‑M1/161‑1 (MQ=255)
                                                                                                                                                              acgtagcCTGGCAGGGGGGAGTGACGCTGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccaggcatcgggtatcacttaacccattacaagccctcttccgcagatagtcccgtggcgagcgataacccagcgcactaggcggatgccattcgttataatgcgcgggcgcctctgcaaggtttgttgctgccggtaacc                                                                                           <  2:198098‑M1/248‑161 (MQ=255)
                                                                                                                                                               tccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCCGATTGTCGATATGAACTGTAGGCAGCTCCAGCGCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTTAACCCAGCAACAACATGCCATCAAtt                                                                                          <  1:212247‑M1/166‑1 (MQ=255)
                                                                                                                                                                  aatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCCGATCCAGCTCCGGGGCCAATTCGTTCGCCATCACCATCGGCGGCAGATTTCGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTTAAACCAGCAACCACATGCCCTCAATTTGc                                                                                       <  2:398120‑M1/169‑1 (MQ=255)
                                                                                                                                                                   atgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCAGCAATTTGCt                                                                                      >  2:319820‑M1/82‑251 (MQ=255)
                                                                                                                                                                          gtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGtgat                                                                               >  1:298271‑M1/75‑251 (MQ=255)
                                                                                                                                                                              ggTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgc                                                                                                                        >  2:177115‑M1/1‑75 (MQ=255)
                                                                                                                                                                              aaaaacgagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGACATGAACTGTAGGCAGCTCAAGCGGCGGGGCAAATTCGTTCGCCAGCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGGAACAACAGGCCACCAATTTGCTTGGGgatgat                                                                            <  2:197991‑M1/180‑1 (MQ=255)
                                                                                                                                                                                    gACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccagtcgttataatgcttgaacgcctatgcaaggttctttgcttccgttaacccgtctggtttgggcatgatact                                                                     <  1:241958‑M1/251‑183 (MQ=255)
                                                                                                                                                                                      gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTATGCCACTCCAGCTCCGGTGCAAATTCGTTCGCCCTCACCATCGGCGGCCGATTACGCTGTTCCTCCATTCTGGCATCAAACGGCCGCCTTGAAACCAGCCACCACATGCCATCACTTTGCTTGGTGATGAACAAATCGAt                                                                   <  2:409109‑M1/189‑1 (MQ=255)
                                                                                                                                                                                      gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTg                                                                                                                                                                                            <  2:202187‑M1/68‑1 (MQ=255)
                                                                                                                                                                                      gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTg                                                                                                                                                                                            >  1:202187‑M1/63‑130 (MQ=255)
                                                                                                                                                                                          taagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATaaa                                                                >  2:80662‑M1/59‑250 (MQ=255)
                                                                                                                                                                                           aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAg                                                               >  2:320713‑M1/58‑250 (MQ=255)
                                                                                                                                                                                              cATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtca                                                           <  1:172372‑M1/251‑193 (MQ=255)
                                                                                                                                                                                               ctatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCCGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGtttt                                                          <  1:29537‑M1/198‑1 (MQ=255)
                                                                                                                                                                                                   ctTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacg                                                         <  2:182524‑M1/248‑195 (MQ=255)
                                                                                                                                                                                                     cttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCCATATGAACTGTAGGCAGCTCCAGCTCCGGGGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCctg                                                    <  1:23073‑M1/204‑1 (MQ=255)
                                                                                                                                                                                                      ttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCctgc                                                   <  1:321365‑M1/205‑1 (MQ=255)
                                                                                                                                                                                                            acgtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCCTCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGAttt                                             <  2:331247‑M1/211‑1 (MQ=255)
                                                                                                                                                                                                            aagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGGTTGTCGATATGAACTGTAGGCACCTCCAGCTCCGGTGCCAATTCGTTCGCCATCACCATCGGCGGCAGAATACGCTGGTCCCCAATGCTGGCATAAAAAGGCAGCCTTGAACCCAGAAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAAGATTTTTCCTGATGAttt                                             <  2:128377‑M1/211‑1 (MQ=255)
                                                                                                                                                                                                               tgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTg                                           <  1:269231‑M1/213‑1 (MQ=255)
                                                                                                                                                                                                                gatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGa                                          >  1:82179‑M1/37‑250 (MQ=255)
                                                                                                                                                                                                                 ataCAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacg                                         >  2:395840‑M1/1‑40 (MQ=255)
                                                                                                                                                                                                                   attggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCTGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAAGTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTGTTGCCTGCTGATTTTGATgcg                                      >  2:385728‑M1/34‑251 (MQ=255)
                                                                                                                                                                                                                       gttgtctggagattcagggggccagtctaATACTTTACTGCATCAAATGCGGCGGTCCGGTTGTCGATATGAACTGTAGGAAGCTCCAGCCCCGGTGCAAATTCGTTCGCCATCCCCATCAGCGGCAGATTACGCTGGTCCTCCATGCTTGCATCAAACGGCAGCCTTGACCCCAGCCACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGATTTTTCCTGCTGATTTTgatgcggac                                   <  2:127895‑M1/221‑4 (MQ=255)
                                                                                                                                                                                                                        ttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAAATGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCCGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACCACATGCCATCCATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTTCTGGTTTTGATGCGcac                                   <  2:161841‑M1/221‑1 (MQ=255)
                                                                                                                                                                                                                          gtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCTGCGGCAGATTACGCTGTTCCTCAATTCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAATGGTGTTTTCCTGCTGAGTTTGATGCGCACAGTc                               >  2:212247‑M1/27‑251 (MQ=255)
                                                                                                                                                                                                                            cgtgagattcagggggccaggctaATAATTTACTGCATCAAATGCGGCTGTCAGATTTTCGAGATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTGCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAGCCCAACAACAACATGCCATCAATTGGCTGGGGGATGATCAAAGCGATAAAGGTTTGGTCCTGATTATTTTGATGCTCACAGTCGc                             >  2:187111‑M1/25‑251 (MQ=255)
                                                                                                                                                                                                                              ggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCa                           >  2:172509‑M1/23‑251 (MQ=255)
                                                                                                                                                                                                                               tttATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccagtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctatt                          >  1:37166‑M1/1‑26 (MQ=255)
                                                                                                                                                                                                                                tgatgCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacagctgttatcacgtaacccattacaagcccgctgccgcagatattcccggggcgagcgataacccagagcactatgcggatgcgattcgttagaatgctcgaacgcctctgcaagggtctttgcggccgttaaccagtctggtttgggcatgatactgatgtagtcacgctttatcgtttgcacgaagctcggtgctatt                          <  2:50268‑M1/248‑226 (MQ=255)
                                                                                                                                                                                                                                  attcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCa                       >  1:91382‑M1/19‑251 (MQ=255)
                                                                                                                                                                                                                                   ttcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCa                                                                                                                                    <  1:234308‑M1/124‑1 (MQ=255)
                                                                                                                                                                                                                                   ttcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCa                                                                                                                                    >  2:234308‑M1/18‑141 (MQ=255)
                                                                                                                                                                                                                                      ccTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgtgaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttac                   <  2:209848‑M1/251‑233 (MQ=255)
                                                                                                                                                                                                                                        tcgctCATATGAATAATtggatttacccctatatttccagccatctgttatcacttaacccattataaccccgctgccgcagatattcccggggagagcgataacccagctcactctgcggatgccattcgttataatgctcgcacgcctctgcaagattctttgctgccgttaacccgtctggtttgggcatgatactgctgtattcacgctttatggtttttacgaagctctatgctattccgttcctt                 >  2:101492‑M1/3‑17 (MQ=255)
                                                                                                                                                                                                                                          gCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctc               >  2:324382‑M1/1‑15 (MQ=255)
                                                                                                                                                                                                                                               gtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTGGGCAGCTCCAGCTCCGGTGCAAGTTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCTATGCTGGCATCAAACGGc                                                                                                                           <  2:197661‑M1/133‑1 (MQ=255)
                                                                                                                                                                                                                                               gtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTGGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGc                                                                                                                           >  1:197661‑M1/6‑138 (MQ=255)
                                                                                                                                                                                                                                                ataaataaTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttcttt                                                                                                        >  2:293843‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                                                ataaataaTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttcttt                                                                                                        <  1:293843‑M1/156‑148 (MQ=255)
                                                                                                                                                                                                                                                  aaataaTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactcc       >  2:11306‑M1/1‑7 (MQ=255)
                                                                                                                                                                                                                                                       atTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTg  <  2:344160/251‑1 (MQ=255)
                                                                                                                                                                                                                                                       atTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTg  <  2:344184/251‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         
CGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTG  >  NC_000913/4123679‑4124176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.