| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 438,623 | C→T | A519T (GCG→ACG) | dxs ← | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 438,623 | 0 | C | T | 98.4% | 218.5 / ‑4.0 | 63 | A519T (GCG→ACG) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (27/34); total (28/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
TTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGACCGTCAGCACCAACAATGCC > NC_000913/438335‑438914 | ttttGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTNAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCa < 2:612603/300‑1 (MQ=255)ttttGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCa < 1:370523/300‑1 (MQ=255)ttttGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCNGCGCCGCCCATAATGGCGTTTTCTTCNACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCa < 2:557560/300‑1 (MQ=255) ttCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGt > 2:182162/1‑300 (MQ=255) aCCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCaaa > 1:71285/1‑300 (MQ=255) cATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTATGGCATCAGCGTACCAAAGTTAAGGa > 2:735804/1‑300 (MQ=255) aTCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGAt < 2:244243/300‑1 (MQ=255) gTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCNTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGACAGTTtct > 1:553556/1‑300 (MQ=255) ggCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGcc < 1:208028/300‑1 (MQ=255) ccTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCTATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTAAGGTGAACAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTNACGCTTCATCAAGCGGTTTCACAAAACGCATATCGAACAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCAGGTTTCTCGCCACGACGCTTCACaa > 2:197353/1‑300 (MQ=255) gTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGcat > 1:85155/1‑298 (MQ=255) gAATAAAGAAGTCCGGCAGGCCAATGTTCAGNACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCNTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTAATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGACAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTg > 2:592901/1‑300 (MQ=255) ggCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTATGGCATCAGCGTACCAAAGTTAAGGATCGCAAGTTTCTCGCCCCGACGCTTCACAATGCCTTTGCCCACTGGTAGTTTTTCAAgcggcg > 2:153140/1‑300 (MQ=255) ccAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCATGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGTGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCNACCAGCGTGGAGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTAGCCAAGACGCTTCAAAATGCATTTGCACATTGGTAGTTTTTCCAACGGCGTc > 2:185056/1‑300 (MQ=255) ccAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTc > 1:833219/1‑300 (MQ=255) ccAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTACAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCNACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTc > 2:183218/1‑300 (MQ=255) gTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTc > 1:530214/1‑300 (MQ=255) gCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGc < 1:480373/300‑1 (MQ=255) gggTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAATTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGTGGCGTCAGTTCCACGCCGAc > 2:405838/1‑300 (MQ=255) ggTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCCGCGGCGTCAGTTCCACGCAGACCGCGTTg > 2:428784/1‑300 (MQ=255) ggTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTg > 1:501420/1‑300 (MQ=255) ggTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCACATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGAACAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGACAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCATTg > 2:388831/1‑300 (MQ=255) gTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGTCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACNCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCTTGGCGTTCATCGATTCGTCGACNTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTGGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGc < 2:646857/300‑1 (MQ=255) aTCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAgcgc < 1:477880/300‑1 (MQ=255) cACTTCGGTCACGCCGCTGCTTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAATCGGTTTCACAAAACGCATATCGACCATCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTCCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGTGCACCGc < 2:287666/300‑1 (MQ=255) gTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACgg > 1:183665/1‑300 (MQ=255) ttCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACggg < 1:100870/300‑1 (MQ=255) cgcTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGt < 1:628467/300‑1 (MQ=255) ccttcgccacCCATAATTTCGCTTTCCTCCACGGTGACCAGCGCTCCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCGTCAGGCTGTTTCACAAAACGCATATCGACCAGCTTGGCGTGCAGCGATTCTGCGACTTTCGTCGCTTCTGTCATCAGCGTACCAAAGTTAAGGATCGCCAGTTCCTCGCCACGACGCTTCACAATGCCTTTTCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAg < 2:94047/296‑1 (MQ=255) cctgcGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAg < 1:384007/300‑1 (MQ=255) cctgcGCCACCCATAATGGCGTTTTCTTCTACGGGGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAg < 1:696954/300‑1 (MQ=255) tgcGCCGCCCATAAGGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTg < 2:429746/300‑1 (MQ=255) tAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGtat < 1:487002/300‑1 (MQ=255) aTGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATag < 1:771358/300‑1 (MQ=255) gCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGc < 1:109940/300‑1 (MQ=255) gCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACCCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGc < 2:497714/300‑1 (MQ=255) gCGTTTTCTTCTAAGGTGACAGGCGCTTCATGGCTGTCGGCCATTTCCAGAGTTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCTTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTTGCATCAGCGTACCAAAGTTAAGGATCGCCATTTTCTCGCCACGACGCTTCACAATGCTTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGc < 2:383869/300‑1 (MQ=255) ttcttcTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTg > 1:451739/1‑300 (MQ=255) cttctACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGc > 1:533633/1‑300 (MQ=255) atgtgtataagagacagcTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCg < 1:397303/284‑1 (MQ=255) gACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtt > 1:206383/1‑300 (MQ=255) ccAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtttt > 2:693284/1‑300 (MQ=255) cTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCgctgtctcttatacacat > 2:392340/1‑283 (MQ=255) cTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGc > 1:437432/1‑300 (MQ=255) aGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTcc < 1:115857/300‑1 (MQ=255) ttAACGCTTCATCAAGCGGTGTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTa < 2:792989/300‑1 (MQ=255) aCGCTTNATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGNTTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGc < 2:683188/300‑1 (MQ=255) cctcatcaAGCGGCTTCACAAAACGCATATCGACCAGCGCGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATATTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAgc < 2:275096/298‑1 (MQ=255) tcatcaATCGGTTTCAGAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGAATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAgcgc < 2:179209/300‑1 (MQ=255) tcatcaAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAgcgc > 1:233903/1‑300 (MQ=255) tcaAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAgg < 1:806821/300‑1 (MQ=255) ggTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGTCTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCANGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGCCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAagag < 2:713589/300‑1 (MQ=255) ggTTTCACAAAACACAGATCGACCAGTGTTGCGTTCAGCGATTCGTTGACTTTCTGCGCTTTTGGCATCATAGTGCCAAAGTTAGGGATTGCCAGTTTCTTTCCACGACGCTGCACAATGACTTTGCCAAGTGGTAGGTTTTCCAGCGGCTTCAGTTCCACGCCGACCGCGTCGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATTTGGCGACATTCGTTTTCATCGCTCTGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAagag < 2:442382/300‑1 (MQ=255) aaCGCATATCGACCAGCGTGGCGTTCAGCAATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTGAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCTGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAg < 2:313214/300‑1 (MQ=255) aCGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTNGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGNGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGc < 2:653891/300‑1 (MQ=255) gcgtatCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCAc < 2:256883/297‑1 (MQ=255) gCGTGGCGTTTGGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGACAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTCTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTCTAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTACGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGttt > 2:314306/1‑300 (MQ=255) gCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGACAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGTAGGTAAGAGAGATCAAAAGCACCCTGATGGGttt > 2:313807/1‑300 (MQ=255) ggCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGAcc < 1:826671/300‑1 (MQ=255) gCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCAGCAGCGTACCAAAGTTCAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGGAGTGTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGACCg < 1:750270/300‑1 (MQ=255) gTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGACCGTc > 1:635014/1‑300 (MQ=255) gTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCAAGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGATCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTAATGGGTTTGACCGta > 2:300509/1‑299 (MQ=255) gACTTTCGTCGCTTCTGGCATCAGCGGACCAAAGTTAAGGATCACCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCAAGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGACCGTCAGCACCAACAATGcc < 1:2469/300‑1 (MQ=255) | TTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGACCGTCAGCACCAACAATGCC > NC_000913/438335‑438914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |