| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3216779 | 3270031 | 53253 | 25 [0] | [0] 24 | [nfeR]–yhaC | [nfeR],aer,patA,ygjH,ebgR,ebgA,ebgC,ygjI,ygjJ,ygjK,fadH,higA,higB,rlmG,ygjP,ygjQ,ygjR,alx,sstT,ygjV,uxaA,uxaC,exuT,exuR,yqiM,yqjA,mzrA,yqjC,yqjD,yqjE,yqjK,yqjF,yqjG,yhaH,yhaI,yhaJ,yhaK,yhaL,cyuA,cyuP,tdcG,tdcF,tdcE,tdcD,tdcC,tdcB,tdcA,tdcR,yhaB,yhaC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216778 | 0 (0.000) | 24 (0.440) +GTC |
24/484 | 0.6 | 100% | intergenic (‑287/‑1) | nfeF/nfeR | NADPH‑dependent ferric‑chelate reductase/DNA‑binding transcriptional repressor NfeR |
| ? | NC_000913 | 3270032 = | 0 (0.000) | intergenic (+430/+184) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
TTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCT > NC_000913/3269782‑3270265 | aacctcgcaaaggataatgattgttaatcatgataaagtcaagcgtttagtagacctgaaatgtatatagtctaataagacgatccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtct < 2:300549‑M2/1‑1 (MQ=255) ccaaaagaaaaatgtttgttaatcatgataaattcaaggtatgtgtaaaacggatatgtctatagtctgaaaatgggaaccgcctcttctcaggcatcattgctcagcgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcaggtataaattagatatagctaattaagcaaaaggaggctgatgtcTCGt < 2:291096‑M2/4‑1 (MQ=255) aaattgataatgattgttaatcatgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggagtctgatgtcTCGTGGAc < 1:322561‑M2/8‑1 (MQ=255) aatcatgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGc > 2:325898‑M2/226‑251 (MQ=255) aatcatgataaatgcaagcgatttgtagaacggatatgtcaatagtctgaaaagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGc < 1:369007‑M2/26‑1 (MQ=255) tcatgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGccc > 1:230723‑M2/224‑251 (MQ=255) aaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatttatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaa > 1:1226‑M2/217‑250 (MQ=255) ttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgcaggatgcggcgggaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAAccgc > 2:277668‑M2/204‑251 (MQ=255) atatgtctataggctgataagacgaaccgcctcttctcaggcatcattactcaaagccggatgcggcgtgaacgccttattcggcctacgggtgagatgagtccacgtttaaaaatcatttttacaattgcaagaacgctcatatcagatataaattagatatatataattaagcaaaaggaggctgatgtcCCTTGGACAGTCATTCATATTTTTGCGCCTCCAAAAGAAAAAACCCGCCGCAGCGGGtt > 1:324663‑M2/193‑251 (MQ=255) tatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 2:16265‑M2/192‑251 (MQ=255) atagtcgaaaaagaggaaccgcctcttctcaggcatcattactcaacgccggatgcggcgggaacgccttatccggcctacgtgtgagatgattccacttttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:416837‑M2/64‑1 (MQ=255) ctgataagacgaaccgcctcttctccggcatccttactcaccgccggatgcggcgggcacgccttatccggcctacgtgtgagatgagtccacgttttaaaatcatttttacacttgcaagaacgctcatatccgatataaattagatatatctaattaagcaaaaggcggctgatgtcTAGTGGACAGTCATTCATCTTTTTTCCCCTCCACAAGCAACAACCCGCCCAAACGGGTTtttacgtcacccc > 2:226043‑M2/180‑245 (MQ=255) atcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttctt < 1:22843‑M2/101‑1 (MQ=255) actcaacgccgggtgcggcgtggacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCCAAAACCCGCCGAAGCGGGTTTTTACGTAACACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:351184‑M2/145‑251 (MQ=255) caacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGta < 1:303180‑M2/108‑1 (MQ=255) aacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCgctttctttttgggat > 2:366583‑M2/141‑243 (MQ=255) gcctacgtgtgagatcagtttccgtttcacaatcatttttacacttgcaagaacgctcatatccgatatcaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGCGAAACTGACCGATAAGCCGATTTCTTTTGGGTATAGCGTCGAGGACCGTCATTCATCCTTCTGcccc > 2:432533‑M2/110‑251 (MQ=255) cacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgcc < 1:219888‑M2/162‑1 (MQ=255) ttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACg > 2:235278‑M2/74‑251 (MQ=255) aagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCCCAAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:366583‑M2/190‑1 (MQ=255) aacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAACAACCCGACGAAGCGGGTTTTTACGTAAATCAGGTGAAAc > 2:362042‑M2/59‑251 (MQ=255) atatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCTTGGACAGTCCATCATCTTTCTGCCCCTCCAAACGCACAAACCCGCCGAAGCGGGGTTTTTCTTAAATCAGGTCACACTGACCCATagtccgggtctgtttgg > 2:141037‑M2/34‑243 (MQ=255) agcaaaaggaggctgatgtcTCGGGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACACGCCGAAGCGGGTTTTTAAGTAAACCAGGAGAAACTGACAGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCCGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAgtcattcc > 1:280699‑M2/21‑250 (MQ=255) aaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCt > 1:426832‑M2/18‑251 (MQ=255) | TTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCT > NC_000913/3269782‑3270265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |