| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 32.2% | 77.1 / 14.1 | 59 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| Reads supporting (aligned to +/- strand): ref base T (3/37); new base G (19/0); total (22/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.10e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAAAAGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGATTATTT > NC_000913/599331‑599818 | aaaaagccctctggtgccgtCAAACCAGGAAGCGGGCGGGTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCTGCGGCTATCTGCAAACGCTCGACGGCTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGAGGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa < 2:396207/232‑1 (MQ=255)aaaaaGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGggtggggg > 1:94171/1‑248 (MQ=255) aaGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑Tcc < 2:194906/251‑1 (MQ=255) ggaggCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTTGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCg < 2:594015/247‑1 (MQ=255) cAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAAc < 1:427239/251‑1 (MQ=255) cAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAAc < 1:24064/251‑1 (MQ=255) aaCCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGTGGGGGGGTGA‑GCCTTCGGATCGGG‑Caaaacgc > 1:26949/1‑248 (MQ=255) aCCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGACTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGG‑TCCCGCG‑ATCCGC‑CCAAAACGcc > 1:234245/1‑251 (MQ=255) gtcgtcgATCGAACGGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATcgccg < 2:22535/250‑1 (MQ=255) gtcgATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGA‑TCCTGCG‑GTCCCG‑CCAAAACGCCCGGGGAGGGATCgccgccc > 1:197145/1‑250 (MQ=255) atcgaACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGaa < 1:107181/251‑1 (MQ=255) gaACTGGCGGAAGCGGAATCTATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCAGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGA‑GTCTGCG‑GTCCGG‑CGCAAAAAACCGAGAAGTGGTAGccgccgggtaggg > 1:328916/1‑244 (MQ=255) ggCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACaa < 1:301162/249‑1 (MQ=255) aagcggaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGCCGACTTTCATCACATAGTTTTAAAAGCCAGAGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGACGTGGCGGGCGCGGGGGTGG‑TCTTTCG‑CTCCGG‑CAAAAAAGACCGCGACGTGATCGCCGCCGTGAAGGAAAAACTggg > 1:590536/1‑249 (MQ=255) gggaatagagggggcgcgcCAGCGGCGATCTGCAAACGCTCTACGACTTTAACCCCATCGTTTGAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATGGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGTGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACg < 2:411405/238‑1 (MQ=255) gaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGGTCCTGCG‑‑TCCGG‑CAAAAACGGCCGAGAAGGGATTGGCGCCCGGCAGGACAAAcctgcaaagcg > 1:216025/1‑241 (MQ=255) cgcgcCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGGGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGGGATCGTCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCt < 1:239316/251‑1 (MQ=255) cgcCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGA‑TCCCGGG‑GTCCGG‑CAAAAACCCCCGCGGAGGGATCGCCGCCGCGGAGGACAAAACGGAAACGCTGAACAGTAGTCTGc > 1:270273/1‑251 (MQ=255) ccAGCGGCTATCGGCAAACGCTCGACGGCTTTAATAACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCGGCGCGATGTTGCGAAGGTCCAGATGGGCCCGGAGAGGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCg < 2:106773/251‑1 (MQ=255) aGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGG‑TCCTGCG‑GTCCGGGCAAAAA‑GCCCGAGAAGTGATCGCCGCCGGGAAGGACAAAATGGGAACGCTGAAAAGAAGTCTGCCggg > 1:428734/1‑250 (MQ=255) gCGGTTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGaa < 1:420509/251‑1 (MQ=255) aaaCGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGCCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATa < 2:422104/251‑1 (MQ=255) aaCGCTCGACGACTTTAACCACGGCGTTTTAAAAGCCAGTGAAAATGGCGGGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGTCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑GCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGGTGAAAAGGAGTCTGCCGGAAGGCGTGGAGATAg < 2:95088/251‑1 (MQ=255) gacgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGAGAGTTacaac < 2:270273/251‑1 (MQ=255) gacgacTTTAATCACATCGTTTGAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATGGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTacaac < 2:275341/251‑1 (MQ=255) attttAACCACATCGTTTTAAAAGCCAGTGAAAGTGGCGTGCACGTTTCTCTGCGCTAGGTTGCGAAGGTCCAGATGGGCCCGGAGATGCGCTGGGGCTTTGCCGATCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAGCGCCCGAGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGACAAGGAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATAc < 2:451850/249‑1 (MQ=255) acTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATATGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGT‑TACTGCG‑GTGCGG‑CCAAAACGACACAGACGGGAATGCCGCCGGGGAGGGCAAACAAGAAAAGCTGAAAAATAGTCTACCGGAAgggggggaggtagattcaaccaa > 1:526323/1‑229 (MQ=255) aaaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGGTACAACATACGATCGCAGCCAGCTCAtt < 1:460157/250‑1 (MQ=255) aGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGA‑TCCTGCG‑ATCCCG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGGGAAGGACAAAATGGAAAAGCCGAAAAAGAGGCTGCCGGAAGGCGGGGGGGTAGTTTAAAAATACGATCGCAGCCAGCCCATTGACCccgc > 1:491406/1‑251 (MQ=255) gTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGcc < 1:146414/251‑1 (MQ=255) tGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGca < 2:584989/224‑1 (MQ=255) gTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCGGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGa < 2:117577/155‑1 (MQ=255) gTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGT‑TCCCGCG‑GTCCTG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAggg > 1:117577/1‑154 (MQ=255) cccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAg < 1:144783/251‑1 (MQ=255) gTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGA‑TCCCGCG‑GTCCGG‑CAAAAAAGCCCGAGAAGGGATAGCCGCCGTGGAGGACAAACTGGGAAAGCTGAAAAGGAGGCTGCCGGGAGGCGTGGGGATAGTTACAACATAAGATAGCAGACAGCTCATTGACCGCGCCCTCGACAAACTCCGCgg > 1:1168/1‑251 (MQ=255) gTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGA‑TCCTGCG‑ATCCGG‑CGAAAACGCCCGAGAAGTGATCGCCGCCCTGGAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGCAGGCGTGGGGATAGTTACAACATACGCTCGCAGCCAGCTCATTGACCGCGCCCTCGACAAcccccgcgg > 1:7207/1‑244 (MQ=255) ttATCTGCTCGATGTTGCGAAGGTCCAGAGTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCGGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAGCGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGc < 2:234245/250‑1 (MQ=255) ggcgcGATGTTGCGAAGGTCCAGATTGGCCAGGAGATGCGCCGGGGCATTGCCGATCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TACTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTg < 1:321638/250‑1 (MQ=255) gcgATGTAGCGAAGGTCCAGATTGGCCCGGAGAAGCGCCGGGGTATTGCCGAACTAAGCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCAGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTg < 1:312345/251‑1 (MQ=255) cgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATGGCCTAACTAGACGGCGAAGGCGGAGTGGCGGGCGGGgtggtg < 2:373755/88‑1 (MQ=255) ttGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGA‑TCCTGCG‑GTCCGG‑CAAAAACGCCCGGGGAGGGATCGCCGCCGTGGAGGGCAAACTGGGAAAGCTGAAAAGGAGTCTGCCGGAAGGCGGGGGGATAGTTACAACATACGATCGCCGCCCGCCCATTGACCGCGCCCTCGGCAACCTCAGCgggcagattctggaag > 1:328198/1‑235 (MQ=255) ttGCGAAGGTCCAGATTGGACCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGA‑TCCTGCG‑ATCCGG‑CACAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCCGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATAAGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCttggag > 1:479191/1‑244 (MQ=255) gCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGGGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCGCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGt < 1:387916/250‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑AGCCGG‑CAAAAACGCCCGAGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTAt < 1:534420/251‑1 (MQ=255) gatgggCCCGGAGATGCGCCGGGGAATTGCCGAACGAGACGGCGAAGGCGAAGGGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGGCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGtggtgg < 2:11007/247‑1 (MQ=255) gATTGGCCCGGAGATGCGCCGGGGCATTGCCGACCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGAGCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTGTATTGgggtgg < 2:549182/251‑1 (MQ=255) tGGCCCGGAGAGGCGCCGGGGCAGTGCCGAACGAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGGGGTCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGAAGGCTGCCGGAAGGCGTGGAGATAGTTACAGCATACGATCGCAGCCAGCTCATTGACCTCGCCGTTGACTACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCg < 2:590536/250‑1 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCt < 2:447422/131‑1 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGCTCGCCGCCGTGAAGGACAAACTGGAAACGCt > 1:447422/1‑131 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGGGAAGGGGTCGCCGCCGGGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGGGATAGTTACAACATACGATCGCAGACAGCTCATTGTCCGCGCCCTCGACAACCTCAGCGGGAAGTGTCTGGGAGAGGTTATTGtggtgggggg > 1:166756/1‑247 (MQ=255) cccGGAGATGCGCCGGGGCATTGCCGAATGAAACGGCGAAGGCGAAGTGGCGGGCGTGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAATCTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCTAGCTCATGGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAg < 1:292346/251‑1 (MQ=255) ggAGATGAGCCGGGGCATGGCCGAACGAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTTA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCAGCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCt < 2:427543/251‑1 (MQ=255) gagaTGCGAAGGGGCATTGCCGACCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGG‑TCCTGCG‑CCACGG‑GCAAAACGCCCGAGAAGTGATCGGCGCCCTGAAGGACAAACTGGAAAACCTGGAAAGAAGTCTGCCGGGAGGGGCGGTGGTAGTTACCACCTAAGAACGCCGCCACCCCCTTTGCCGCGCCATCGCCAACCACCGCGGGCAGGTGCTGGGAGAGGTTATTGtggtggggggaggctg > 2:208352/1‑241 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGG‑TCCTCCG‑CTCCGG‑CAAAAAAGCCCCCGAAGTGATCGACGCCGGCAAGGGCAAACCGGAAACGCTCCAAAGACGACTCCCGGAAGGCGTGGGGAAAGTTACAAACTCCGCTCGCAGCCAGCCCATTTAACCCGCCATCGACAACCCCAGCGGGAAGATGCTGGAAGAGTTTATTGTGGGGGCGGAGGTCTGTGGGCTGTTtct > 1:284437/1‑251 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTtct < 1:440886/251‑1 (MQ=255) aaggcgaagTGGCGGGCGGGGGGGGGA‑TCCTGCG‑ATCCCG‑CCAAAACGCCCGAGAAGTGATCGCCGCCGTGGAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGGGGTAGTTACAACATACGATCGCAGCCAGCTCCTTGACCGCGCCATCGGCAACCTCAGCGGCAAGTTTCTGGGAGAGGTTTTTGTGGTGGGGGGAGGTTGTGCGCTGTTTTTCTGGCATGTGGGGTCGGCGCtg > 1:84094/1‑251 (MQ=255) ggcgaagGGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCtggt < 2:197145/251‑1 (MQ=255) ggcgggcgGTGTGGTGA‑TCCGGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGGCATCGACAACCTCAGCGGCAAGGGGCTGGAAGAGTTTATTGTTGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCAGGTGCGCTCGGCGCGGGTGGCGatt < 2:284437/250‑1 (MQ=255) gcgggcggGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGattat < 1:227493/251‑1 (MQ=255) gggcgggGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGGCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGATTAttt > 1:240833/1‑251 (MQ=255) gggcgggGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGCGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGATTAttt > 1:366125/1‑251 (MQ=255) | AAAAAGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGA‑TCCTGCG‑ATCCGG‑CAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGATTATTT > NC_000913/599331‑599818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |