Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 308,594 | 0 | T | G | 32.3% | 91.9 / 14.4 | 68 | T247P (ACC→CCC) | ecpC | putative fimbrial usher protein EcpC |
Reads supporting (aligned to +/- strand): ref base T (16/28); new base G (20/1); total (39/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.80e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CATCGTAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGCTCAGATTACTGCTGAGGGTGTTA > NC_000913/308345‑308835 | aaTCGTAAACCCCGTACGGTAGCCCCCGGGTACCCCCTCCATGATTGCCCATAGTAAAGTTCGGAACGCTTAGTAGCCGCCCATCCCGGGGGGGATGTCCTCCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGgtg < 2:232083/250‑1 (MQ=255) aTCGTAAACCCCGCACGGTTGGCCCGGGTTATCCACTTCATGAGTCCCCATGGTGAATTTCTTAACGCTTAGTGTCCGCCCATGACGGGTGAGATTTTCTTCGCCCGCCGCCGGTAAAAAGGCGATCACTTGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGGTTGGTTTCCCCATGAATGGCCGTAAATCTTCCGTGTTGAAATTTCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGgtgt < 1:595021/251‑1 (MQ=255) gTAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATAACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCATCCGCCC‑CAAGGGCCG‑C‑A‑A‑A‑GTCCAGGGGTCgg > 1:297701/1‑250 (MQ=255) ggTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGACCGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCACCGGCCCCTAAGG‑CTG‑C‑ACA‑G‑T‑CCCGGGGTCGGGCATTTCACC‑GGc > 2:49549/1‑251 (MQ=255) gTAGACCCGGGGTATCCACTTCATTATTGCCCATAGTGAAGTTCGGAACGCTTAGTAGCCGCCCATCACGGGTGAGATTTCCTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCa < 2:25074/251‑1 (MQ=255) tAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGACAGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGCTCACTGGCGTGGATGACTGGCTGCTGTCGAAGATG‑GTGGAGATGGCCTGGTTTCCCCAGGAAAGGCCGTAAATATTCCCTGCTGAAATGGCGGTCCTCGGCCC‑CCAAGACTG‑C‑A‑A‑G‑GTTCACGGGTCGGGCATTccccccgcc > 1:389980/1‑243 (MQ=255) aGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GGGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCATCGGCCC‑TTAGGACTG‑C‑A‑A‑G‑TTCCCGGGGTCGAGCAtttcccccgcca > 1:495425/1‑240 (MQ=255) ccccGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑C‑A‑G‑TTCCAGGGGGCGAGCACTCCACC‑GGCAAATCg > 1:127267/1‑251 (MQ=255) cgggttcccccttcataatgccccAGAGTGAAGTCCTGAACGCTTGGTATCCGCCAATCCCGTGTGAGAGGTACTCCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTg < 2:324267/230‑1 (MQ=255) ccACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCACCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTTACCGG‑c < 1:478610/250‑1 (MQ=255) cACTTCATGATTGCCCATCGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCCAATCGGGGACCGG‑cc > 1:186467/1‑249 (MQ=255) cATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCCGGGGTCGAGCATTCCACC‑GGCAAAACGGTGACCGG‑CCAAATcg > 1:109753/1‑251 (MQ=255) aTTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAACGGCCC‑CAAGGGCTG‑C‑A‑A‑G‑TTCCAGGGGTCGAGCATTCCACC‑CGCAAATCGGTGAACGG‑GAAAATcgcctt > 2:482185/1‑248 (MQ=255) aTAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGATGAAATGGCGGTCATCGGCCC‑CAAGGACTG‑C‑A‑A‑G‑GTCCCGGGGGTGAGCCTTTCACC‑CGCAAAACGGGGAACGG‑CAAAATCGCGGTCATaaac > 1:363127/1‑248 (MQ=255) ggAAGTTCTGAACCCTTAGTAGCCGCCAATCGCGGGGGGGAGGTCCTGCCCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAAGCGGTGACCGG‑CAAAATCGCGTTCATACATCGCt < 2:304056/250‑1 (MQ=255) gAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAACAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGCGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCAACGGCCC‑CCAAGACTG‑C‑A‑A‑G‑TTCCACGGGTGGCGGCTTCCACC‑CGCCAATCGGGGGCCCG‑CCAAATCGCGTTCCTAAATCGCtt > 2:224658/1‑251 (MQ=255) gAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGACGCCGGTCAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGACGTAAATCTTCCCTGCTGAAATGGCGGGCATAGGCCC‑TAAGGACTG‑C‑C‑A‑G‑AACCCGGTGTAGAGGATACCCCC‑GGCAAAACGGTGGCCGG‑CAAAAACGGGGTTATACATCGCTTTATATAAt > 1:582797/1‑251 (MQ=255) aaCGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAAGACTG‑C‑A‑A‑G‑GTCCAGGGGTCGAGACTTCCCCC‑GGCCAATCGGGGACCCG‑GAAAAACGCGGTCCTACATCGCTTTATATAAtt > 1:319800/1‑251 (MQ=255) aCGCTTAGTAGCCACCCCTCCAGGGTGAGATGCACTTCGCCAGCCGACGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGCCCC‑TCAGGACTG‑C‑C‑A‑A‑TTCCCGGGGGCGGGCCTTCACCC‑CGCAAATCGGCGTCCGG‑CCCAATCGAGTGCCTACATCGCTTTATATAAttt > 2:279456/1‑250 (MQ=255) ccTTAGGAGCCGCCCAACACGGTTGAGAGGTTCGTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAAGCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑GAAAATCGCGTTCAGACATCGCTTTATATAATTCAc < 2:51006/250‑1 (MQ=255) gccCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAACGGCGATCAATGGCGTGGCTGACTCGCTGATGTCGCAGATG‑GTGGAGCTCGCCCGGCTTCCACAGGAAAGGCCGTAAATCTTCCCTGCTGACATGGCGGTCTTCGGCCC‑CAATGAGCG‑C‑T‑A‑G‑ATCCCGGGGTCGTGTCTTTCACC‑GGCAAATCGGAGACCGGGCAAAA‑CGCGATCACACAACGCTATATATAAtgttcttttctgttg > 1:399345/1‑236 (MQ=255) ccATCAGGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGAcc < 1:497750/251‑1 (MQ=255) gggagaggtcttccgcccgccGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGAt < 2:299744/238‑1 (MQ=255) gTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGGGTCGAGCATTCCACC‑CGCAAATCGGGGACCGG‑CAAAATCGCGTTCCTACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGAt > 1:472444/1‑251 (MQ=255) gatccgcgccagccGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGGCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTAc < 2:511777/245‑1 (MQ=255) tCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGc < 1:367092/249‑1 (MQ=255) gcccgccGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCCTCCGCCC‑AAAGGGCTG‑C‑A‑AAG‑TTC‑AGGTGTCGGGGATTCCACCCGGCAAA‑CGGGGAACGG‑GCAAATCCAGGTCATACATCACTTTAAATAAATCACCGTCCTGTTTACCCCTaaccagcccgtaaagagcgg > 1:532767/1‑232 (MQ=255) ccctccgccgGTAAAAAGTCGATCTCTGGGGTGGCTGACTGGCTGCTGTCGAAGATG‑TTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCGGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTT‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTTCTCC‑GGCAAATCGTTGACCGG‑CAAAATCGCGTTCATACATCTCGTTATGTAAGTCACTGGCCTTGTGACCGCGACCTATCCCGTACACCGAGcc < 2:566738/247‑1 (MQ=255) ccgccgccgGTAAAAAGGCGATCACTGGCGTGGCTGATTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAAGGCTG‑C‑A‑A‑G‑TTCCAGGGGTCGGGCAATCCACC‑GGCCAATCGGGTACCGG‑CAAAAACGCGTTCATACATCGCTTTCTATAATTCACTGTCCTTTTGTCCGCTTACGCTCCCGGACAGCggggcg > 1:522073/1‑246 (MQ=255) ggTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑CAAAGGCTGGC‑A‑A‑G‑T‑CCCGGGGTCGGGGCTTCCCCC‑GGCCAAACGGTGACCCG‑CCAAATCGCGTTCCTACAACCCTTTTTATAATTTACTTTCCCGTTTACCGCTTCCGCTcccccacagggcggccttcggcac > 2:462090/1‑230 (MQ=255) aaaaaGGCGATAACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCCGCCC‑TAAGGACTG‑C‑A‑A‑GATTCC‑GGGGTCGAGCCTTTCACC‑GGCAAAACGGGGACCGG‑CAAAATTGCGTTCATACATAGCTTTATATAATTCACTTTCCCGTTGACCGCTCCCGATCCCGGACAGCGCGCCGTCGAgacccac > 1:98185/1‑245 (MQ=255) aaaaGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCCTCGGCCC‑CAAGGGCTG‑CCA‑A‑G‑TTCC‑GGTGGCGGGCATTCCCCC‑GGGCAATCGGGGTCCGG‑CAAAATCGCGTTCCTACCTCGCTTTTTATAATTTCCTGTCCTGTTTACCCCTACCGATCCCGTaagtacgggggaggggcgggtgg > 2:65675/1‑229 (MQ=255) aaaaGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GTCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTa < 1:65675/229‑1 (MQ=255) aTCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑C‑A‑G‑TTTCAGGTGTCGAGCATTCCACC‑GGCAAATCGGGGACCGG‑CAAAATCGCGGTCATACATCGCTTTATATAATTCACTGTCCTGTTGAACGCTACCGATCCCGTAAAGCGAGCCGTCGAGGACCACCTGATGttt > 1:64608/1‑250 (MQ=255) ggCGTGGCTGACTGGCTGCTGGCGAAGATG‑GTGGATCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCgca < 2:173174/250‑1 (MQ=255) gcgtggcttcatGGCTGCTGTCTAAGATG‑GTGGAGCTGGCCTGGTTTCGCCAAGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGTCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CATAATCGCGTACAGACATCGCTTTAGATAATTCACTGTCCTGTTGACCGGTACCGATCCCGTACAGCGAGCCGTGGAGCACCACATGATGTTCGCgcatt < 2:278355/240‑3 (MQ=255) gACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCGGGTTTCCCCAGGAAATGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAAc < 2:193401/251‑1 (MQ=255) aCTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACg < 1:224658/251‑1 (MQ=255) aCTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCACAGGAACAGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGGCC‑TAAAGACTC‑C‑A‑A‑G‑TTCCCGGCGTCAAGGATTCCACC‑GGCCAATCGGTGACCGG‑CCAAATCGCGCTCATACATCCCATTATATAAATCCCTGGCCTGTTGACCGCTACCGATCCCGTAAAGCGAGCCGTCGAGAACCACATGATTGTCGGGCAGTGCAGTaa > 1:32868/1‑249 (MQ=255) tGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGGGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGtt > 1:141303/1‑251 (MQ=255) tGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCATCGGCCC‑CAAGGACTG‑C‑A‑A‑G‑TTCCCGGTGTCGGGCCTTCCACC‑GGCAAATCGGCGACCGG‑CAAAATCGCGTTCATACATTGCTTTTTATAATTCACTGTCCTGTTGACCGCTACCGATTCCGTACAGCGGGCCATCGAGCACCCCATGATGTTCGCGCCGTGCAGTAACGtt > 1:528925/1‑251 (MQ=255) ggCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGtt < 1:276441/250‑1 (MQ=255) ggCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTa < 2:450241/251‑1 (MQ=255) ggCTGCTGTCGAAG‑TGTGGGTAGCGGGCCTCGTTTCCCCAGCAAAGGTCGTAAATCTTCCCGGCTGAAATGGCGGTCATCGGCCC‑GAAGGACTG‑C‑A‑A‑G‑TTCTAGGTGTCTAGGATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCTTTCATACATCGCGTTATATAAGTCACTGTCCTGTTGGCCGCTACCGAGCCCGTACTGCGGACCGTCGAGGATGACATCATGGTCGCGCAGTTCAGTAACGt < 2:371800/249‑1 (MQ=255) cGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGAc < 1:420980/251‑1 (MQ=255) cGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCAATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGAc < 1:459849/251‑1 (MQ=255) gAAGATG‑GTGGCGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCCTCGGCCCCAAAGGACGC‑C‑A‑A‑G‑T‑CCCGGGGTAGAGCCTTCCACC‑GGCAAATAGGTGACCGG‑CAAAATAGCGTTCATCCATCGCTTTTTATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCCTCGAGCACCACCTGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGAc > 2:536173/1‑250 (MQ=255) gAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGTGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGATCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACa < 1:556112/251‑1 (MQ=255) aaGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGGAACGTTATTCAGCGACAg < 1:155918/251‑1 (MQ=255) gAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTACCTGCTGAAATGGCGGTCATCGGCCC‑CAAGGACTG‑A‑A‑A‑G‑CTTCACGAGTCGGGCATTCCACC‑CGGAAATCGGTGACCGG‑CCAAATCGCGTTCATACATCGCTTTTTATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACCGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGGAACGTTATTCAGCGACCGAAAGCTgg > 1:241451/1‑250 (MQ=255) aGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGGCA‑TAAAGAATG‑C‑A‑A‑G‑TTTCAGGTGTCGCGACTTCCACC‑GGCCAATCGGGGACCGG‑CACAATAGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGGGCACCACATGAAGTTCGCGCAGTGCAGTAACGTTATTAAGCGACCGATAGCTggct > 1:406083/1‑249 (MQ=255) ggCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGAtgtg < 1:527679/250‑1 (MQ=255) ggCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGAtgt < 1:239695/249‑1 (MQ=255) gagttCCCCAGGAAAGGCCGGAAATCTTCCCGGCTGATAGGTCGGTGATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGGGTCGAGCATTGCACC‑GGCAAAGCGGGGACCGG‑CAAAATCGCGTTCATACATCGCTATATATAATGCACTGTCCTGTTGACCGCTACCGAGCCCGTACAGCGAGCCGACGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGtttct < 2:26977/247‑4 (MQ=255) ttCCCCAGGAAAGGCCGTAAATCGTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TGCCAGGTGTCGAGCATTCCACC‑GGCAAAGCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGGTCGTGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTccc < 1:537693/250‑1 (MQ=255) ccccAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCAGACATCGCTTTATATAATTCACTGTCCTGTGGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTTGATGTGTTGCTCccgcc < 2:297701/251‑1 (MQ=255) cccAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCCTCGGCCC‑CAAGGCCTG‑C‑A‑A‑G‑TTCCAGGGGTCGGGCATTCCCCC‑GGCAAATCGGGGACCGG‑CAAAATCGCGTTCATACATCCCTTTTTATAATTCCCTGTCCTGTTGACCGCCACCGATCCCGGCCAGCGAGCCGTCGAGCACTCCCTGATTTTCGCGCAGTGCAGGAACGTTATTCCGCGACAGATAGCTGGATGTGTTGCTCccgccg > 2:338092/1‑251 (MQ=255) gTAAATCTTCCCTGCTGAAATGGCGGTCATCGGGCC‑TAAAGAATA‑C‑C‑A‑G‑TTCCCGGTGTCGAGCATTCCACC‑GGGCAATCGGGGAACGG‑CAAAATCGCGTTCCTACATCCCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTTCCGCGAGCCGTCGAGCACCACCTTATGTTCGCGCAGGGCAGTAACGTTACTTAGCGACAGATAGGTGGTTGAGATGCTCCCGCCGTTACCCAACTggg > 2:104630/1‑250 (MQ=255) ttCCCTGCTGAAATGGCGGTCATCGGCCC‑CAAGGACTG‑C‑A‑A‑G‑GTCCAGGGGTCGAGCATTCCACC‑GGCAAATCGGGGACCGG‑CAAAATCGCGCTTATACATCGCTTTATATAATTCAATGTCCTGTTGACCGCTACCGATCCCCTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGCAACGTTATTCAGCGACAGATAGCTGGAGGTGTTGCTCCCGCCGTTACGCAACTGGGTGTtatt > 1:484678/1‑250 (MQ=255) cccTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCCCTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTtat > 1:422007/1‑248 (MQ=255) ctgctgAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑GTCACGGAGTAGAGCATTCCACC‑GGCAAATCGGTGACCCG‑CAAAATCGCGTTCATACATCGCTTTTTTTAATTCAATGTCCTGTTGACCGCCACCCATCCCGCACAACGACCCGTCGAGCCCCCCATGATGTTCGCGCAGTGCCGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTTCTCCCGCCGGTCCGCAACTGGTTGTTATAGACg > 1:353049/1‑251 (MQ=255) aaaaTGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGTTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGA‑CAAAATCGCTTTCATCCATCGCTTTATATAATTCCCTGTCCTGTTGACCGCTACCGATCCCTTACAGCGAGCCGTCGAGCACCACATAATGTTCGCGCATTGCAGTAACGTTATTCAGCGACAGATAGCTGGATTGGTTGCTCCCGCCGT‑ACGCAACTGGTTGTTATAGACGCCCAAg < 1:77831/250‑1 (MQ=255) ggTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGAACGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGc > 1:132646/1‑251 (MQ=255) cATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAA‑TCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGCTc > 1:313698/1‑249 (MQ=255) cGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGCTGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGCTc > 2:45021/1‑247 (MQ=255) cGGCCC‑TAAGGACAG‑C‑G‑A‑T‑TTCCAGGTGTCGATCATTCCACC‑GGCAAATCAGAGACCGG‑CAACATCGCGTTCAGACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGTTCCCGTACAGCGCGCCGTCGAGCCCCACATGCTGTTCGCGCAGTGCAGTACCGTTATGCAGCGACAGATAGCTGGAGGTGTTGCTCCCGCCGTTACGCACCTGGTTGTGTTAGACGCCCAAGTTATGGCTCCGAt > 2:510652/1‑251 (MQ=255) ccc‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGCTCAGATTAc > 2:233798/1‑251 (MQ=255) a‑a‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTccc < 2:339452/188‑1 (MQ=255) a‑a‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTccc > 1:339452/1‑188 (MQ=255) g‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGCTCAGATTACTGCTGAGGGTGTTa > 1:344292/1‑250 (MQ=255) | CATCGTAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAGATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATG‑GTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCC‑TAAGGACTG‑C‑A‑A‑G‑TTCCAGGTGTCGAGCATTCCACC‑GGCAAATCGGTGACCGG‑CAAAATCGCGTTCATACATCGCTTTATATAATTCACTGTCCTGTTGACCGCTACCGATCCCGTACAGCGAGCCGTCGAGCACCACATGATGTTCGCGCAGTGCAGTAACGTTATTCAGCGACAGATAGCTGGATGTGTTGCTCCCGCCGTTACGCAACTGGTTGTTATAGACGCCCAAGTTATAGCTCAGATTACTGCTGAGGGTGTTA > NC_000913/308345‑308835 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |