Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,027,2330TA32.8% 83.2 / 21.3 61intergenic (+5/+376)fre/fadANAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase
Reads supporting (aligned to +/- strand):  ref base T (27/12);  new base A (0/19);  total (27/34)
Fisher's exact test for biased strand distribution p-value = 1.51e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGGCGCTTTCGTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATA  >  NC_000913/4026984‑4027481
                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         
aGGCGCTTTCGTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCTGGAA‑GATCGCCTGTTTGA‑CGATGCAT‑TTGC‑ATTTATCTG‑AGAtata                                                                                                                                                                                                                                                          <  1:213755/251‑1 (MQ=255)
          gTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATaaaa                                                                                                                                                                                                                                                       <  1:146956/244‑1 (MQ=255)
              aaGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGAGGGCTGGCGTGGGCGTACTGGCACCGTGTTAACGGCGGTATTGCAGGACCACGGGACGCTGGGCGAGGATCATAT‑CTATATTTTCGGACGTTTTGTGATGGCGGAAA‑T‑TGCCC‑G‑CGATATGTTTTTCAGTG‑AG‑CGTAATGCGCGGGGA‑GATAGCCTGTTTGG‑CGGTGCGT‑TTGC‑ATTTTTTTG‑TGATATAAAAAAAACc‑ccccc                                                                                                                                                                                                                                           >  1:252859/1‑251 (MQ=255)
                      gggTCTGCAAGTGGGGCCGGTGGTTGAAAAACGGGAGGCGGGCGGGCGTGGGCGTACGGGCACGGTGTTAACGGGGGTATTGCAGGATCACGGTACGCGGGCAGAGCATGATAT‑CTATATTGCCGGCCGTTTTGAGAGGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGGG‑AG‑CGTAAGGCGCGGGAA‑GATCGCCTGTTTGG‑CGAGGGGT‑TTGC‑ATTTATCGG‑AAATAAAAAAAAACCC‑GCCCCTGACAGGc                                                                                                                                                                                                                                   <  1:174173/250‑1 (MQ=255)
                                      ccGGTGGTTGAAAAACGGGAGGCGGGTTGGGGGGGGCGTCCGGGGCCGGGGTGAACGGCGGTATTGCAGGATCCGGGTACGCGGGAAGAGCATGATAT‑CTAGATGCCCGGTGGTTTTGAGAGGGCGAAA‑‑T‑TGCCCCG‑GGATTGGTTTGGGAGTG‑GG‑CAAATTGCGGGGGAA‑‑AACGCCTTGTGGG‑TGATGGGTGTTGT‑ATTTATCTA‑AAATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACt                                                                                                                                                                                                                   <  2:237502/251‑1 (MQ=255)
                                                    cccggaggggggCTGGCGGGGGCTTACTGGCCCCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGACCATGATAT‑CTATATTGCCGGACGTTTTGAGAGGGCGAAAT‑T‑GGCCC‑G‑CGATTTTTTTTGCAGGG‑AG‑CGTAGGGCGGGGAAA‑GATCGCTTGTTTGC‑CGATGCGT‑TTGC‑ATTTGTCTG‑AGATATAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAAGTAAACTTTTATTCAg                                                                                                                                                                                                     <  1:454700/242‑1 (MQ=255)
                                                                  ggggTGGGCGTTCGGGCACCGTGTTAGCGGCGGTATGGCAGGACCACGGTCCGCTGGGAGAGCATGATAT‑GTATATTGCCGGACGTGTTGAGATGG‑GAAAAGT‑GGCCG‑G‑CGTTCTGTTTGGTGGTG‑AG‑CGTAAGCCGCGGGAA‑GATCGCCTTTTGGG‑GGATGGGT‑TTGC‑TTTTAT‑TGTAGATATAAAAAACCCC‑GCCCCTGACAGGCTGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCt                                                                                                                                                                                       <  1:367286/248‑1 (MQ=255)
                                                                      ggggCGTCCTGGCACCGTGTTAACGGGGGTATGGCGGGCTCCGGGTCCGCTGGCAGAGCATAATTT‑ATATATGGCCGGGCGTTGGGGGGGGGC‑AAAA‑TGTCCCT‑G‑CGATGTGTTTTGC‑GTG‑GGGCGTATGGCGCGGGAA‑GATCGCTTGTGGGG‑GGGTGTTT‑TTGC‑TTTTATTGG‑AGATAAAAAAAAGCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGa                                                                                                                                                                                   <  1:354730/250‑1 (MQ=255)
                                                                        ggcttactggcccctgtttAACGGCGGTATTGCAGGCTCAGGGTACGGTGGCAGAGAAGAATAG‑CTATATTGCGGGGCGTTTTGAGATGGC‑AAAA‑T‑TCCCCCG‑CGATGTGTTTTGGAGGGGAG‑‑GTAAGGCGGGGGAA‑GAGCGCCTGTGTGG‑CGGGGGGT‑TGGC‑ATTGATCGA‑AAATAAAAAAAAACCC‑GCCCCGTACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACg                                                                                                                                                                                 <  2:600562/234‑1 (MQ=255)
                                                                        ggCGTCCTGGCCCCGTGTAACCGGCGGTTTTGCGGGATCAGGGTTCGCTGGAAGAGCATGATAT‑TTATATGGCCGGACGTTTGGAGAGGGCGAAAT‑T‑TGCCC‑G‑GGATCTGTTTTGCAGGG‑AG‑CGTAATGCGCGGAAA‑GATCCCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATA‑AAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGt                                                                                                                                                                                <  1:153303/251‑1 (MQ=255)
                                                                               ggcaccggttttaccggggtatttGCAGGATCCCGGTAGGCGGGAAGAGCAGGTTAT‑CTATATTCGCGAGTGTTTGGAGAGGGGAAAAA‑T‑TCCCC‑G‑CAATTTTTTTGGCGGTG‑AG‑CGTAATGCGCGAAAA‑GATCGCCTTTTTGG‑GGAGGCGT‑TGGA‑ATTTATCGG‑AAATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTAGTCAGTGGCATTTAGATCTATGACGTATCTgg                                                                                                                                                                          <  2:525481/229‑1 (MQ=255)
                                                                                           accggcggttttgcagagtcgcagaaCGCTGACAGGGAATGATAT‑TTATTTTCCGGGACGTTTTGACAGGGCAAAAT‑T‑TGCCC‑G‑CTTTCTGTTTCGCATTG‑GG‑CGAAATGGGCGGAAA‑AATCGCTTGTTTGC‑CGATGGTT‑TTGA‑ATTTATTTG‑ATATATAAAAAAGCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGccc                                                                                                                                                              <  1:600641/226‑1 (MQ=255)
                                                                                            ccggcggTATTGGAGGATCACGGTAGGGTGGCAGAGCATGAGTT‑CTATTTTGCCGGCCGTTTTGAGAGGGCGAAAA‑T‑TGCCC‑G‑CGATTTGTTTTGCGGTG‑AG‑CGTAAGGCGCGGAAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTTC‑ATTTATCTG‑ATATAAAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCg                                                                                                                                                             <  2:134225/250‑1 (MQ=255)
                                                                                              ggcggTATTGCAGGATCACGGTACGATGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCCACCAAACTGTTATTACGTGGCATTTAGATTTAGTAAGTATTCGGCAAACCACGCCCg                                                                                                                                                             >  2:197468/1‑249 (MQ=255)
                                                                                               gcggTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGCAGAACGGCAACTAAACTGTTATTCCGTGGCCTTTAGATCTATGACGTATCTGGCCAACCATTCCCGATg                                                                                                                                                          >  2:306435/1‑251 (MQ=255)
                                                                                                 ggTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCAGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGACCGGCAACTAAACTGTTTTTCCGTGGCATTTAGATCTATGACGTATCTGGCAAACAATGCCCGATGCg                                                                                                                                                        >  2:385579/1‑251 (MQ=255)
                                                                                                  gTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCg                                                                                                                                                        >  1:279254/1‑250 (MQ=255)
                                                                                                   gttggcgggatcgaggtccGCTGGCAGAGCATGATAT‑CTATATTGCCGGATGTTTTGAGAGGGCAAAAT‑T‑TCCCC‑G‑CGATTTGTTTGGCAGTG‑AG‑CGTAATGCGCGGGAA‑TCTCGCCTGTTGGG‑CGTGGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGAc                                                                                                                                                      <  2:165532/233‑1 (MQ=255)
                                                                                                         aggatacgggtccGCTGGCAGAGCATGATAT‑CTTTATTGCCGGACGTTGTGAGAGGGCGAAAA‑T‑‑GCCC‑GGCGTTTTGTTTGGCAGGG‑AT‑CGTAAGGCGCGGGAA‑GGTCGCTTGTTGGG‑CGGTGGTT‑TTGC‑ATTTATCTG‑AGATATAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATTCCCGATGCGACGCTGTc                                                                                                                                                <  1:259340/239‑1 (MQ=255)
                                                                                                           gATCACGGTAAGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCCACTAAACTGTTATTCAGTGGCATTTAGATCGATGAAGTATTTGGCAAACCATTACCGGTGCGCCGCTGTcgc                                                                                                                                              >  2:62627/1‑251 (MQ=255)
                                                                                                                cGGTACGTTGGCAGA‑CATTATTTTCTATATTCCCGGCCTTTTTGAGAGGCCGAAAA‑T‑TCCCC‑G‑CGATCTTTTTTGCATGG‑GG‑CGAAAGGC‑CGGGAAATATC‑CCTTTTTGGTCGTTGC‑T‑TTGCCTTTTATCTG‑AAATATAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCtt                                                                                                                                         <  1:592157/251‑1 (MQ=255)
                                                                                                                cGGTACGCTGGCAGAGAATGATAT‑CTATATTGCCGGACTTTTTGAGATGGCAAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAAGGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGTGT‑TTGC‑ATTTATCGG‑AGATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCtt                                                                                                                                         <  1:155625/251‑1 (MQ=255)
                                                                                                                 ggtccGCTGGCAGAGAATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCAAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCATTG‑AG‑CGTAATGCGCGGAAA‑GATCGCGTGTTGGG‑CGATGCTT‑TTGC‑ATTTATCTG‑AGATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTa                                                                                                                                        <  1:131708/247‑1 (MQ=255)
                                                                                                                    aCGCTGGCAGAGCATGATAT‑CTCTATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCggg                                                                                                                                                                                                                                >  2:86640/1‑160 (MQ=255)
                                                                                                                      gCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCggg                                                                                                                                   >  1:163991/1‑249 (MQ=255)
                                                                                                                             gagCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAT‑T‑TCCCC‑G‑CTATCTGTTTGGCAGTG‑AG‑CGTAATGCGGGGGAA‑GATCGCCTTTTTGG‑CGATGCTT‑TGGC‑ATTTATCTG‑ATATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACaa                                                                                                                            <  1:214419/251‑1 (MQ=255)
                                                                                                                             gagCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACa                                                                                                                             >  1:483672/1‑250 (MQ=255)
                                                                                                                              agCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACaa                                                                                                                            >  2:308176/1‑250 (MQ=255)
                                                                                                                                    atat‑CTATATTGCGGGACGTTGTGAGGTGGCGAAAA‑T‑TGCCC‑G‑CGTTCTGTTTTGCATGG‑AG‑GGTAATGCGGGGGAA‑GTTCGC‑TGTTTGGGCGATGCGT‑TTTC‑ATTTATCGG‑AGATATAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTcc                                                                                                                     <  1:417665/251‑1 (MQ=255)
                                                                                                                                           gtatTGCCGGATGTTTTGAGATGGCGAAAT‑T‑TGCCC‑A‑CGATCTGTTTTGC‑GTGGAG‑CGTAATGCAGGGGGA‑CAACGCCTTTTTGG‑GTAGGCGT‑TTGC‑ATTTATATG‑AAAAATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACTGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTTCAAATAGTCCGaa                                                                                                                  <  1:355376/247‑1 (MQ=255)
                                                                                                                                           atatTCCCGGACTTTTTGAGAGGGCGAAAA‑T‑TGCCC‑G‑CGATCTTTTTTGCGGTG‑AG‑CGAAAGGCGCGGGAA‑GACCGCCTTTTTGG‑GGAGGGGT‑TTGC‑TTTTATCTG‑AGAAAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                                                               <  1:196770/251‑1 (MQ=255)
                                                                                                                                               tGCCGGACGTTTGGAGATGGCGAAAA‑T‑GGCCG‑C‑CGATCTGTTTTGCAGTG‑GG‑CGTAATGCGGGGGAA‑GATCGCCTGTTTGG‑CGTTGGGT‑TTGC‑ATTTATCTG‑AGATAAAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAg                                                                                                            <  2:138242/250‑1 (MQ=255)
                                                                                                                                                gccggatgtgttaagttGGCGAAAA‑T‑TCCCC‑G‑CGATCTTTTGTGAGGTG‑AT‑GATAATGC‑CGGGAAAGCTCGCTTGTTGGG‑TGATGCTT‑TTTC‑ATTATTCTA‑AGATATAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACGAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGTCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGc                                                                                                          <  1:85355/235‑1 (MQ=255)
                                                                                                                                                   ggACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGCTCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCCACTCAACTGTTATTCAGCGGCATTTAGGTCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCCTATCGTGCCTACAAATAGTCCGAACCGTAGGCCgg                                                                                                       >  2:36392/1‑251 (MQ=255)
                                                                                                                                                   ggACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTCTCTG‑AGATATAAAAAA‑CCC‑GCCCCTGACAGGCGGGGAGAACGGCAACTAAAATGTTATTCAGTGGCATTTAGCTCTCTAACGTATCTGGCACACCATTCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAAACGGAGGCCgg                                                                                                       >  1:600860/1‑250 (MQ=255)
                                                                                                                                                       gTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATa                                                                                                    >  1:30083/1‑250 (MQ=255)
                                                                                                                                                                tGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATAGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAAATAAACTGTTATTCCGTGGCATTTAGGTCTATGAAGTATTTGGCAAACCATGCCCGATTCGACGCTGTCGCGTCTTATCCTGCCTTCAAATAGTCCGCAACGTAGGCCGGGTAAGGCGTTTAc                                                                                          >  1:88726/1‑251 (MQ=255)
                                                                                                                                                                    gAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAAACATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGCACCGTAGGCCGGATAAGGCGTTTAcgccc                                                                                      >  1:501190/1‑250 (MQ=255)
                                                                                                                                                                             gCCC‑G‑GGATTTGTTTGGGAGTG‑GG‑GGTAAGGCGGGGGAA‑GACCGTGTGTTTGG‑CGGGGCGT‑GTGC‑ATTTATCTG‑AGATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGGAGCTGGCAAACCATGCCCGATGCGACGCTGGCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                               <  2:536118/251‑1 (MQ=25)
                                                                                                                                                                             cccc‑G‑CGATCTGTTTGGAAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTTTTTGG‑CGTTGGGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                               <  1:49484/250‑1 (MQ=255)
                                                                                                                                                                              ggcccgtgttCTGTTTTGCAGTG‑AG‑CGTAAGGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGGTT‑TTGC‑ATTTATCTG‑AAAAAAAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTATGCCGCATCCg                                                                                <  1:466704/242‑1 (MQ=37)
                                                                                                                                                                                cccgggtttttttttGCAGTG‑AG‑CGTAATGCGGGGGAA‑GACCGCTTGTTTGG‑CGATGCGT‑TTGA‑ATTTATCTG‑AGATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                              <  1:17404/240‑1 (MQ=38)
                                                                                                                                                                                c‑g‑cgATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGCGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                             >  1:229571/1‑250 (MQ=255)
                                                                                                                                                                                     gATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAA‑CCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCCGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTTCGCCGCCTCCGGCAATTgg                                                                        >  2:114247/1‑251 (MQ=255)
                                                                                                                                                                                     gATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGACTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAACAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCCACTAAAATGTTATTCCGTGGCATTTAGATCTATGACGTATCTGGCAAACCATACCCGATGCGCCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTg                                                                         >  1:572782/1‑251 (MQ=38)
                                                                                                                                                                                        cTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTATGG‑CGATGCGT‑TTGC‑ATTTCTCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGCAGAACGGCAACAAAAATGTTATTCAGAGGCATTTAGATCTATGACGTATCTGGCAAAACCTGCCCGATGCCACGCTGTCGCGTCTTCTCGAGCCTAAAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTgggg                                                                      >  1:367852/1‑249 (MQ=37)
                                                                                                                                                                                             tggcgggg‑AG‑CGTAAGGCGGGGGAA‑GCTCGCTTTTTGGG‑CGGTGCGT‑TTGC‑ATTTATCTG‑AGATAAAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCatg                                                                  <  2:434160/243‑1 (MQ=25)
                                                                                                                                                                                                      gg‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGAGGCTT‑TTGC‑ATTTATCGG‑AGATAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGAt                                                         <  1:308176/250‑1 (MQ=255)
                                                                                                                                                                                                        ggggtagtgcgcggaaaacgcGCCTGTTGGG‑CGGTGTGT‑TTGC‑TTTTATCTA‑AAATAAAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGTGGTGCATGATGCCTGAt                                                         <  2:214443/231‑1 (MQ=21)
                                                                                                                                                                                                         cGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑TGATATAAAAAACCCA‑GCCCCTGAGAGGCGGGCAGGAAGGCACCTAAACTGTTATTGAGTGGCATTTAGATCTATTACGCTTCTGGCAAACCATGCCCGATGCGACGCTGTAGCGACTTCTCGTGCCTACAAATAGTCCGAAACGTCGGCCGGATAAGGCGTTTACGTCGCAACCGGAAATTGGTGCATGGTGCCTGATGc                                                       >  1:288904/1‑251 (MQ=255)
                                                                                                                                                                                                                 gcgGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAA‑CCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAATCCGAACCGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCCATTGGTGCATGATGCCTGATGCGACGCTGTc                                              >  1:429400/1‑251 (MQ=255)
                                                                                                                                                                                                                   ggaaa‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AAATA‑AAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTcgc                                            <  1:271525/248‑1 (MQ=255)
                                                                                                                                                                                                                     gAA‑GATCGCCTGTTTGG‑CGGTGGGT‑TTGC‑ATTTATGTG‑AAATAAAAAAAACCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTcgcg                                           <  1:307345/251‑1 (MQ=255)
                                                                                                                                                                                                                          aTCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAA‑CCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTCAACTGTTATTCAGAGGCATTTAGATCt                                                                                                                                                                                       >  1:580096/1‑106 (MQ=255)
                                                                                                                                                                                                                                tGTTGGG‑CGATGCGT‑TTGC‑TTTTATCTA‑AAAAAAAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGt                                  <  1:134061/250‑1 (MQ=255)
                                                                                                                                                                                                                                gcctgtgtggctagcggttagaaTTTATCTG‑AGATAGAAAAAAGCCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATc                                    <  1:325273/229‑1 (MQ=25)
                                                                                                                                                                                                                                    tgtgggggagtggttttacattATCTG‑AGAGAAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGAGCTATGACGTATCGGGCAAACCATGCCCGATGTGACGCTGTCGCGTCTTATCGTGCCTACAAAGAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATAATGCCTGATGCGACGCTGTCGCGGCTTATCGt                                  <  2:68781/230‑1 (MQ=21)
                                                                                                                                                                                                                                        cGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGGCTTATCGTGCCTACAAATAGTCCGAACCGTAGGACGGAAAAGTCGTTTTCGCCGCATCCGGCCATTGGTGCATTATTACTGAGGTGACGCTGGCGCGTCTTTTCGGGCCttca                           >  2:469737/1‑247 (MQ=25)
                                                                                                                                                                                                                                               t‑ttGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGCCGCTTTCGCCGCTTATCGTGCCTCCAAAAAGTcc                   >  2:178035/1‑251 (MQ=37)
                                                                                                                                                                                                                                                 ttGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGTAGAACGGCAACTAAACTGTTATTCAGTCGCAATTAAATCTATGACGTATCTGGAACAACATGACCGCTGCGACGCTGTCGCGTCTTTTCGTGCCTTCAAATTGTCCGAAACGTAGGCCGGATAAGGGGTTTACGCCGCATCCGGCCATTGGTGCATGATGCCTGATGc                                                       >  1:357791/1‑214 (MQ=255)
                                                                                                                                                                                                                                                 ttGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGCCGCTGTCGCGCCTTATCGTGCCTACCAATAGTccc                  >  2:215433/1‑250 (MQ=255)
                                                                                                                                                                                                                                                                 gaTATAAAAAAACCC‑GCCCCTGACAGGCGGGGAGAACGGCCACTAAAATGTTATTCCGTGGCATTTAGATCTATGACGTATCTGGCAAACCCTGCCCGATGCGGCGCTGTCGCGTCTTTTCGTGCCTACAAATAGTCCGAACCGTAGGCCGGGTAAGGCGTTTCCGCCGCATCCGGCAATTGGTGCCTGATGCCCGATGCGACGCTGTCGCGGCTTATCGTGCCTACAAATAGTcccacacgcaggccggg    >  2:382050/1‑236 (MQ=21)
                                                                                                                                                                                                                                                                   aataAAAAGACCC‑GACAATGACAGGCAGTAATATCGGAAACTAAACTGTGTGTCAGTGGAATTTGGATCTATGACGTATCTGGCAAATCATGCCCGATGCGAAGATGTCGCGTCTTTGCGAGCCTACAAATAGTGCGAATAGTAGGCCGGATAGGGGGATTACGACGCATCCGGCAATTGGTGCATCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATa  <  2:453466/250‑1 (MQ=16)
                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         
AGGCGCTTTCGTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATAT‑CTATATTGCCGGACGTTTTGAGATGGCGAAAA‑T‑TGCCC‑G‑CGATCTGTTTTGCAGTG‑AG‑CGTAATGCGCGGGAA‑GATCGCCTGTTTGG‑CGATGCGT‑TTGC‑ATTTATCTG‑AGATATAAAAAAACCC‑GCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATA  >  NC_000913/4026984‑4027481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑