Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,901,817 | 0 | C | . | 35.6% | 138.1 / 103.0 | 75 | coding (404/1617 nt) | bglH | carbohydrate‑specific outer membrane porin, cryptic |
Reads supporting (aligned to +/- strand): ref base C (20/27); new base . (13/13); total (35/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.26e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-02 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ACCTTTGGTGGTAACGTACATATCGGAGAACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCT > NC_000913/3901567‑3902065 | aCCTTTGGTGGCCACGTACATATCAGAAACCTGCATATAGATCTCGCCCCCGACGTTATCGCCAAACCAGCAGGTAGAGTACTGATGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCCAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGACCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTccccc > 2:308389/1‑251 (MQ=255) ccTTTGGTGGTAACGCACATATCGGAGAACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAAATGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTcccccc > 2:220309/1‑250 (MQ=255) gggtggtAACGTACATATCGGAGAACGGCATATAGTTCCCGCCCCCGGCGTTAGCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTGCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAg < 2:421019/250‑1 (MQ=255) gtAACGTACATATCGGAGAACTGAATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGCAGAGTACTGCTGACCAACGTTAACATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATAGCCCATGATTTAGGAGGACCATGAGATGCGGTCCCCAAACCATAACg > 2:507167/1‑251 (MQ=255) atCGGAGAACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGG‑GCCCCAACCAGAACGGTAATAGCCGtt > 2:442994/1‑251 (MQ=255) cGGATAACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTGTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGATCCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTg < 1:250017/250‑1 (MQ=255) ggAGAACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGt > 1:174227/1‑250 (MQ=255) gagaACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGgtgtt > 2:9053/1‑250 (MQ=255) aagaACTGCTTATATTGCGCGCCACCGGCGTTAGCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGGAATAGCCGTTGTa < 2:236240/250‑1 (MQ=255) agaACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGCACGGTAATAGCCGTTGTa > 2:232897/1‑250 (MQ=255) agaACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTaa < 1:122924/251‑1 (MQ=255) aCTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTa < 1:566318/251‑1 (MQ=255) aCTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTaa < 1:249567/251‑1 (MQ=255) cATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATCCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCCGAACGGTAATAGCCGTTGTAACTAAAGc > 2:479079/1‑251 (MQ=255) ataGTTCTCGCCCCCGGCTTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCTTGGTAGACACGTTGTTTTAACTGCAAATCAAACCGGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAAGCACCCATGATTGAGGTTAACCATGAGAGGCGGTCCCCCAACCATATCGGTAATAGCCGTTGTAACTAAAGCCa < 2:602953/250‑1 (MQ=255) aGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAAt < 1:120458/250‑1 (MQ=255) cGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCt < 1:181155/251‑1 (MQ=255) gCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTCCTGACCAACGATACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCtt > 1:102407/1‑251 (MQ=255) gTTATCGCCAACCCAGCCGGTAGAGTACTGCTGACCAAAGTTACCATCCATCATCACAACGGCATCAACCCGTTTGACGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGACGGAGTATTCGTTACCAGAGCGTCCCAGAGACCCACTCGCCCATGATTTAGGGGAAACATGAGCGGCGGTCCCACCACCAGAACGGCAATAGCCGTTGTAACCAAAGCCAATTTCCTCTTACACaaaat > 2:56428/1‑249 (MQ=255) tATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAAttt < 2:242623/250‑1 (MQ=255) aTCGCCAAACCAGCCGGTAGAGGACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACTTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGAGTTAGGTGAACCATGATAGTCGG‑GCCCCAACCAGAACTGTAATAGTCTGTGTAACTAAAGCCAATTTCATCTTTCACAAATTTAc < 1:354773/250‑1 (MQ=255) gCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGc < 1:386166/208‑1 (MQ=255) gCCAAACCAGCCGGTAGAGAACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGc > 2:386166/1‑208 (MQ=255) ccAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGaa < 1:245176/251‑1 (MQ=255) cAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAAt < 2:333210/251‑1 (MQ=255) aGCCGGTTGAGTACTGCTGACCAACGTTTCCATCCTTCATCACAACGGCATCAACCCGTTTGCTGTTTTCGTTGTTGACACGTTTTTTTAACTGCAAATCAAACCAGCTGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGACCCATTAGAGGCGGTCCCCCAACCATAACGGTAATAGCCGTTGTATCTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTc < 2:528972/251‑1 (MQ=255) aGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTc > 1:110563/1‑251 (MQ=255) agattACTGCTTACCAACGTTCCCATCCATCATCACAACGGCATCAACCCTTTTGCCGGTTTCGTTGTAGCCCCGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAAGTTCATCTTTCACAAATTTACTGAAATCTTTCAGTGTc < 2:179762/246‑1 (MQ=255) agagTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGTTCCCCCAACCAGAACGGTAATAGCCGGTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTc < 1:271817/250‑1 (MQ=255) agagTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTc < 1:9053/250‑1 (MQ=255) agagTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGGAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATTTTTCAGAGTcc > 2:169933/1‑250 (MQ=255) agTACTGCTGACCAACGTTCCCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGTCCCAGAGAACCAATCGCCCATTATTTAGGTGAACCATGATAGGCGGTCCCCCATCCAGAACGGTAATAGCCTTTGTAACTAAAGCCAAGTTCATCTTTCACAAATTTACTGGAATCTTTCAGAGTCATg < 2:597008/251‑1 (MQ=255) gTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTTAACCAGGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATgg < 1:584712/251‑1 (MQ=255) tACTGCCGACCAACGTTACCATCCATAATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGCCACGTTGTTTTAAATGCAAATCACAACAGCCGGAGTATTAGTTCCCAAAGCGGACAAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGG‑GACCAAACCAGAACGGTAATAGCCGATGGAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCagaggactgga > 2:63086/1‑243 (MQ=255) cAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATc < 1:506940/251‑1 (MQ=255) cAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCg > 2:121160/1‑251 (MQ=255) aCCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCCGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCCTCTTTCACAAATTTACTGAAATTTTTCAGAGTCATGGAAGAATAAATCGAGCCtt > 2:77897/1‑250 (MQ=255) catccatcATCACAACGGCATCAACCCGTTTGCCGTGTTCGTTGTATACACGTTGTTTTAACTGCAAATCAATCCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGAGTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTTCTGAAATCTTTCAGAGTCATGGAAGAAGAAATCTAGCCTGtc < 2:213612/251‑1 (MQ=255) catcatcttagcGGCATCCACCCGTTTGCCGGGTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAACCCAGCCGGAATATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGGGGTCCCCCAACCAGAACGCTAAAAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAACTGACTGAAATCCATAAGAGTCATGGAAGAATAAATCGAGCCTGTCTCAc < 1:56428/240‑1 (MQ=255) atcatcACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AAACAGAACGGTAATAGCCGTTGTAACTAAAGCCACTTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTg > 1:512935/1‑251 (MQ=255) cacaAAGGCATCAACCCGGTTGACGTTTTCGTTGTAGACACGTTGTTTTAACTGAAAATCAAACCCGCCGGTGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGG‑GACCCAACCAGAACGGTAATAGCCGATGTAACTAAAGCCAATTTCATCTTTAACAAATTTACTGAAATATTTCAGAGTCATGGACGAATAAATCGAGCCTGTCTCACTGGcctt > 2:221227/1‑248 (MQ=255) caACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCAtttt > 1:345366/1‑251 (MQ=255) aaCGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAACCCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCCGAACGGTAATAGCCGTTGTAACTAAAGACAATTTCATCTTTCACAAATTTACTGCAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCCCTGGCAttttt > 2:240286/1‑251 (MQ=255) ccGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCAtttt < 1:77897/251‑1 (MQ=255) ccGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAAAATAAATCGACCCTGTCTCACTGGCATTTTTCTCTTCAttttt > 1:107831/1‑251 (MQ=255) gCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCATAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACGGGCATTTTTCTCTTCATTTTTGAcc < 2:54763/250‑1 (MQ=255) ccGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGt < 1:240286/251‑1 (MQ=255) tttCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCTTTTTTCTCTTCATTTTTGACCAGTAcc > 2:3954/1‑250 (MQ=255) tttCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACa < 2:174227/250‑1 (MQ=255) aGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAgg < 1:111785/250‑1 (MQ=255) gttgttTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTCCCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTTTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGct < 2:341628/251‑2 (MQ=255) tAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGGAAAAGCCGTTGTAACTAAAGCCAATTTCCTCTTTCACAAATTTACTGAAATCTTTCCGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTTACCAGTACAGCATCAGGTTTTGCGGCactac > 2:428841/1‑251 (MQ=255) aaaCTCCAAATCAATCCAGCCGAGGTATTCGTTACCAAACCGGCCCAGAGACCCAATCGCCCAAGATTTAGGTGAACAATGAGGGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACGAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCactac < 2:86898/249‑1 (MQ=255) aCTGCAAATCAACCCAGCCGGAGTATTCGGTCCCAAAGCGGCCCAGAGAACCAATCGCCAATGATTTAGGTGAACCATGAGTGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATGTCATCTGTCACAAATGTACTGAAATCTTGCAGAGTCATGGAAGAATAAATCTAGCCTGTCTCACTGGCATGGTTCTCTTCATTTTTGACCAGGACAGCATCAGGGTTTGAGTCACTACTgg < 2:576164/251‑1 (MQ=255) cTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGAGGCCCAGAGAACCAATCGCCCATGATTTAGGCGAACCATGAGAGGCGGTCCCC‑AACCCGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGGGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTAAAGCATCAGGTTTTGCGGCACTACTGGt > 1:397091/1‑251 (MQ=255) tGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTTTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTc > 1:217253/1‑251 (MQ=255) gCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGAGTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTGTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTc < 2:55508/251‑1 (MQ=255) aaaTCAAACCAGCCGGAGTATTCGTTACCCAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCCTGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCCGTACAGCATCAGGTTTTGCGGCCCTCCTGGTCgg > 2:265970/1‑251 (MQ=255) cAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAAACCATAGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCATGCCTGTGTCACTGGCATTTTTCTCTTCCTTTTTGACCAGTAACGCCTCAGGTTTTGCGGCACTACTGGTCGGGAAc > 1:546294/1‑251 (MQ=255) ccGGGGTATCCGTTACCAAAGCGGCCCAGAGAACCAATCTCCCACGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAAAACGGTAAGAGCCGTTGTAACTAAAGCCAATTTCATGTTTCACAATTTTACTTAAATCGTTCAGTGTCATGGAAGAATAAAGCGAGGCTGTCTCACTGGCATTTTGCTCTTCATTTTGGACCAGTACAGCATCAGGTTTTGCTGCGCTTTTGGTCGGCAACGGATTggc < 2:62483/251‑1 (MQ=255) aTTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCAt > 2:317837/1‑188 (MQ=255) aTTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCAt < 1:317837/188‑1 (MQ=255) cGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGAGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAAATAAAGCCAATTTCATCTTTCCCAAATTTACTGAAATCTTTCAGAGTCATGGGAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGGTTTGCGGCACTACTGGGCGGGAACGGATTGGCGGCATACCCt > 2:51572/1‑251 (MQ=255) cGGCCCATAGACCCACTCACCCATGATTGAGGTGAACCATGTGAGCCGGTCACCCATCCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGATTCATGCAAGAATAAATCGAGCCTGTCTCACTGGCATGTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTGGATCATTCGt < 1:399959/251‑1 (MQ=255) cccAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATATTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCCTTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACtt > 1:195722/1‑251 (MQ=255) agagAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGTTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCGTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCAGCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTAc < 1:220309/251‑1 (MQ=255) agagAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGCCCCCCAACCAGAACGGTAATAGCCGTTGTAAATAAAGCCAATTTCATCTTTCACAAATTTCCTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCATGTCTCACTGGCATTTTTCTCTTCATTTTTGGCAAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAAAGGATTGGCGGCATACCCTTGATCATTCGGACTTAc > 1:74663/1‑251 (MQ=255) gagaACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGc > 1:436413/1‑251 (MQ=255) agaACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGc > 2:433564/1‑251 (MQ=255) gaACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCAt > 2:429712/1‑237 (MQ=255) gaACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAAGCGAGCCTGTCTCACTGGCATTTTTCTCGTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCAt < 1:429712/237‑1 (MQ=255) aaCCAATCGCCCATGATTTAGGTGAACCATGGGAGGCGGTCCCC‑AACCAGAACGGTAATAGCCGTTTTAACTAAAGCCAATTTCAGCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGGCCAGTACAGCATCAGGTATTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTAc < 1:598571/251‑1 (MQ=255) ccATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGGAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCg > 1:234149/1‑251 (MQ=255) aTGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTc < 1:232897/251‑1 (MQ=255) aTTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAAAGGATTGGCGGCATAACCTTGATCATTCGTCCTTCCGCCACGATTCACCggccct > 2:346088/1‑246 (MQ=255) gCGGTCCCC‑AACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTtcttctct < 1:90699/251‑1 (MQ=255) ggTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTtcttctctt > 1:521878/1‑251 (MQ=255) ccccAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATc < 1:265970/251‑1 (MQ=255) cccAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCt > 1:456897/1‑251 (MQ=255) | ACCTTTGGTGGTAACGTACATATCGGAGAACTGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCT > NC_000913/3901567‑3902065 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |