| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3216779 | 3270031 | 53253 | 32 [0] | [0] 33 | [nfeR]–yhaC | [nfeR],aer,patA,ygjH,ebgR,ebgA,ebgC,ygjI,ygjJ,ygjK,fadH,higA,higB,rlmG,ygjP,ygjQ,ygjR,alx,sstT,ygjV,uxaA,uxaC,exuT,exuR,yqiM,yqjA,mzrA,yqjC,yqjD,yqjE,yqjK,yqjF,yqjG,yhaH,yhaI,yhaJ,yhaK,yhaL,cyuA,cyuP,tdcG,tdcF,tdcE,tdcD,tdcC,tdcB,tdcA,tdcR,yhaB,yhaC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216778 | 0 (0.000) | 32 (0.460) +GTC |
28/484 | 0.8 | 100% | intergenic (‑287/‑1) | nfeF/nfeR | NADPH‑dependent ferric‑chelate reductase/DNA‑binding transcriptional repressor NfeR |
| ? | NC_000913 | 3270032 = | 0 (0.000) | intergenic (+430/+184) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
GCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCACGCCATGAGGGCTGCTGCAAAGGTGAGAAGTCAGAACACGAGCACTGCGGACACGGTCACCAGCATGAACACGGTCAATGCTGCGGTGGTCGCCACGGTCGCGGCGGCGGTCGTCGGCAACGTTTCTTTGGTCACGGTGAATTACGTCTGGTGATTCTGGATATTCTCTCGCGCGATGACAGCCACGGTTACGAATTGA > NC_000913/3216538‑3217022 | acaAATGATAATGATTGTTAATAATGATAAATGCAAGCGTTTTGTAAAACTGATATGTCTATAGTCTGATAAGCCGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTGGCAATAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtgga < 1:568342‑M1/250‑11 (MQ=255) cAAATTATAATGTTTGTTAATCTTGATAAATGCATGCGATTTGTATAACTGATATGTTTATTGTCTGATAAGACAAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggac < 1:307452‑M1/251‑12 (MQ=255) aaatgaaaatgaTTGTAAATCATGAAAAATGAAAGCGATTTGTAGAACTGATATGTCTATAGCCGGATAAGCCGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggaca < 2:420139‑M1/251‑13 (MQ=255) gTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGAAAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatcttt < 1:578742‑M1/250‑26 (MQ=255) tCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGCACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCCCGTTTAAAAATCCTTTTTCCACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAACAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgccc > 2:476553‑M1/1‑220 (MQ=255) tGCAAGCGATTTGAAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCAGGATGAGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTACCA‑GTTTAAAAATCATTTTTACACATGCCAGAACGCTCATATCCGATATAAATTAGCTATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccatccaaaagc > 2:81683‑M1/1‑210 (MQ=255) cGATTTGAAGAACTGATAGGTTTATATCCTAAAAAGCCGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTATATATATCTAATTAATCAAAAGCAGGCTGATggctcgtggtcaggcattcagctttctgcccctccaaaagcaaaaac < 2:490443‑M1/251‑48 (MQ=255) ttaaaactgaTATGTCTATGTTCTAAAAAGCCAAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGATATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaccccgcc < 1:398654‑M1/246‑53 (MQ=255) gTAGAACTAATATTTCTATAGTCTGAAAAGCCAAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgcc < 2:400395‑M1/250‑53 (MQ=255) atgtatagtgtttgataagaagaacCGCCTCTCCTCAGGCATCATTACTCAACGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttt < 2:497660‑M1/239‑65 (MQ=255) atGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACCCTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaacgccaaaacccgccgaagcgggtttt > 2:297183‑M1/1‑187 (MQ=255) tatagatgaaaagtacgacccgcctcttcTCAGGCATCATTACTCAACGCCGGAGGCGGCGTGAACGCCTTAGCCGGCCTACGGGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATAAGATATAAATGAGATGTATCTAATTAAGCAAAAGGAGGGTGATgtctcgtggacagtcattcatcttgctgcccctccaaaagcaaaaacccgccgaagcggggttttacg < 2:367172‑M1/236‑69 (MQ=255) aaGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtg > 1:308446‑M1/1‑171 (MQ=255) aGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCCTTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtga > 2:405493‑M1/1‑170 (MQ=255) aGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctt < 1:546462‑M1/194‑25 (MQ=255) aGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctt > 2:546462‑M1/1‑170 (MQ=255) aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgac < 1:473722‑M1/251‑88 (MQ=255) cagcaatcatgactcAACGCCGGAGGCGGCGTGAACCCTTTATCTGCCCTACGTGTGAAATGATT‑CCACGTTAAAAAATCATTTTTACACTTGAAAGAACGCTCATATCAGATATAAATCAGATATATCTAATTAAGAAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacttaaaccaggtgaaactgaccgataatccgct < 2:341494‑M1/246‑100 (MQ=255) atcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTCCGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttctt > 2:139432‑M1/1‑147 (MQ=255) atTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttg < 1:229457‑M1/251‑108 (MQ=255) gacTCAACGCCGGAAGCTGCGTGAAAGCCTTATCCGGCCTACGTGAGCGATGAGT‑CCAAGTTTAAAAATCATTTTTACCCTTGCAATAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatatttctgcccctccaaaaacaaaaacccgccgaagcgggcttttccgtaaatcaggctaaactgaccgctacgccgatttcttttgcg > 2:143750‑M1/2‑142 (MQ=255) ccTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgta < 2:16129‑M1/175‑71 (MQ=255) ccTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgta > 1:16129‑M1/1‑105 (MQ=255) aGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcggggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacc < 1:82352‑M1/251‑162 (MQ=255) ccACGTTTAAAAATCATTTTTACACTTGCAAGACCGCTCATATCAGATATAAATAAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcggtgacagtcattcatctttctgcccctccaaaagcaaaaacccg < 1:516282‑M1/250‑164 (MQ=255) aGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtga > 1:557770‑M1/1‑57 (MQ=255) gAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaa > 1:430921‑M1/1‑56 (MQ=255) ggaTATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtagtcgacagtcatccatctttctgcccctccaaaagccaaaacccgccgcatcgggtttttacgaaaatcaggtgaaactgtccgatgagccggcttcagtt > 2:339422‑M1/2‑32 (MQ=255) tAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgcaaaccaggtgaaactgaccgataagccgctttcttttgggtatag > 1:293298‑M1/1‑23 (MQ=255) tAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccccccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggttaaactgaccgataagccgctttcttttgggtatag < 2:293298‑M1/137‑115 (MQ=255) cAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttctgtcgtggacagtcattcatc > 1:112717‑M1/1‑15 (MQ=255) ggttgatgtctcggggccagacattcatctttctgcccctcaaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggggaaactgaccgataagccgctttcttgtgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttctgtcgtggacagtcattcatctaggccag < 1:476553‑M1/248‑245 (MQ=255) | GCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGT‑CCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCACGCCATGAGGGCTGCTGCAAAGGTGAGAAGTCAGAACACGAGCACTGCGGACACGGTCACCAGCATGAACACGGTCAATGCTGCGGTGGTCGCCACGGTCGCGGCGGCGGTCGTCGGCAACGTTTCTTTGGTCACGGTGAATTACGTCTGGTGATTCTGGATATTCTCTCGCGCGATGACAGCCACGGTTACGAATTGA > NC_000913/3216538‑3217022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |