New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	917372 =	46 (0.820)	3 (0.050)	3/488	3.9	7.1%	coding (900/1659 nt)	ybjD	DUF2813 domain‑containing protein YbjD
	?	NC_000913	2052198 =	32 (0.570)					intergenic (+184/‑1445)	yeeJ/shiA	inverse autotransporter adhesin/shikimate:H(+) symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGGTGATCAAAGCGTATTTGAAAAGCTTGGGTTTGCTTATGCGACATGTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAG  >  NC_000913/2051950‑2052432                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           cAGGTGATCAATGCGTATTTGGAAAGCTTGGGATTTCTTTTGCGACATGTTATTAAAACATGTGATTTTACGTTATAATTTTTTAAAGAGTGCTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGCACTAGCCCTTCTCTCACAGACCATGAATAAATAAAACTGCGGCACCGCCAGAATCGCGTTCGATGTGACTATCATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCtgtg                                                                                                                                                                                                                                          >  2:284917/1‑251 (MQ=255)      gATCAAAGCGTATTTGAAAAGCTTGGGTTTGCTTATGCGACATGTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTgatgat                                                                                                                                                                                                                                     >  1:274322/1‑251 (MQ=255)                                   tGCTTATGCGACATGTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGAcaccc                                                                                                                                                                                                        >  2:192130/1‑250 (MQ=255)                                            gACATGTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCAt                                                                                                                                                                                                >  1:246149/1‑250 (MQ=255)                                            gACATGTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCAt                                                                                                                                                                                                >  2:293169/1‑250 (MQ=255)                                                 gTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCGCCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGa                                                                                                                                                                                          <  1:353833/251‑1 (MQ=255)                                                        aaaCCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCAt                                                                                                                                                                                   >  1:412347/1‑251 (MQ=255)                                                                gATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTTCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGc                                                                                                                                                                           <  1:67429/251‑1 (MQ=255)                                                                                     aaaGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATtct                                                                                                                                                      >  2:349789/1‑251 (MQ=255)                                                                                                cATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAacac                                                                                                                                           >  1:268264/1‑251 (MQ=255)                                                                                                 aTTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTCGACCTTCTCTCAACGAAATTGAATAAATAACAATGCGGCACCGCCAGAATCGCGTTCGCTGTGACTATGATCATTTTCGGTGCGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGGTCATAACACATCGGCATTACTATGCCTAAGTACTGTCTCTTATTATAGCCAAAACACt                                                                                                                                          >  2:471328/1‑251 (MQ=255)                                                                                                               tttttACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCtt                                                                                                                              <  1:88851/249‑1 (MQ=255)                                                                                                                       ttCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTCTGATCATTTTCGGTGCGTACTGCTTTGCTCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTc                                                                                                                     >  1:481009/1‑250 (MQ=255)                                                                                                                          ccTCTACGGAACGAGCCCTTCTCCCACAGAAAATGAATAAAAAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATcc                                                                                                                 <  2:364638/251‑1 (MQ=255)                                                                                                                           ctctACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATcc                                                                                                                 >  1:250180/1‑250 (MQ=255)                                                                                                                                       aGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGt                                                                                                    >  1:116008/1‑251 (MQ=255)                                                                                                                                                ctcACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAAtttt                                                                                             <  1:293169/249‑1 (MQ=255)                                                                                                                                                 ccacaGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTGCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTGAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTg                                                                                          <  1:30282/250‑1 (MQ=255)                                                                                                                                                    caGAACATGAATCACTAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTCTGATCATTTTCGGTGAGTACTGATTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGCGTATTGATGACACCAACGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGccc                                                                                       >  2:454158/1‑251 (MQ=255)                                                                                                                                                         aaTGAATAACTAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAacg                                                                                   >  2:426150/1‑250 (MQ=255)                                                                                                                                                          aTGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCAGAAGTACTTTCTCATATTCTCGCCAAAACACTTTTTAATGCCGTTGCGAATTCATCCATACTTATATTGTCAATTTTTTGCCCAacgac                                                                                 <  1:48178/251‑1 (MQ=255)                                                                                                                                                                          gCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGAc                                                                  >  1:340613/1‑250 (MQ=255)                                                                                                                                                                          gCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATCTTCGGTGAGTAATGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTAAGAGCATTGCTGACACCACCGCTCATAACAGCTCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGAc                                                                  >  1:284584/1‑250 (MQ=255)                                                                                                                                                                                    cAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATAGGCATTACTATGCATAAGTACTGTCTCATCTTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCTGAGCCATCGGCCATTg                                                       >  1:46199/1‑251 (MQ=255)                                                                                                                                                                                            cgTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACAGCGGCCATTGCGGGCCAt                                               <  2:352870/251‑1 (MQ=255)                                                                                                                                                                                                cGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTGTGCTCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATcgc                                            <  1:439716/250‑1 (MQ=255)                                                                                                                                                                                                    gtgACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGttt                                        <  1:316346/250‑1 (MQ=255)                                                                                                                                                                                                          aTGATCCTTTTCGGTGAGTACTGCTTTGATCTAACGGCTGGTTTTCTGTGCTGCTTGACCAGCCTCAGAGTATTGATGCCACCACCGTTCATCACAGATCGGCATTACTATGCCTAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATc                                 >  2:222406/1‑251 (MQ=255)                                                                                                                                                                                                                          aGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGACGACACCAACGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCACATATTCCCGCAAAAACACTTTTTAATGCCTTTGCGACTTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGACATCGCGTTTTGTAATCAGCATAAATTGcaac                  >  1:467584/1‑250 (MQ=255)                                                                                                                                                                                                                             aCTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCaacaac               >  1:391129/1‑250 (MQ=255)                                                                                                                                                                                                                                         aaaaGGCTGGTTTTCTGTGATGATTGACCAGCCGCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTCCTATGCATAAGTACTGTCTCATATTCGCGCCAAAACACTTTTTAATGCCTGGGCTAATTCATCCAGGCTTATATTGTCAATTTGTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCTTGTGGTAATCAGCATAAATTGCAACAACAGGGGTATTATAg  <  1:284917/250‑1 (MQ=255)                                                                                                                                                                                                                                          aaaGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGtattat    <  1:192130/248‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           CAGGTGATCAAAGCGTATTTGAAAAGCTTGGGTTTGCTTATGCGACATGTTATAAAAACCTGTGATTTTCCGTTATAATTTCTTAAAGAGTGTTCCATTCGGGGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAG  >  NC_000913/2051950‑2052432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.