Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,756,045	T→C	intergenic (+90/‑114)	ssrA → / → intA	tmRNA/integrase IntA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,756,045	0	T	C	100.0%	173.8 / NA	54	intergenic (+90/‑114)	ssrA/intA	tmRNA/integrase IntA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/22);  total (32/22)

GGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGT  >  NC_000913/2755811‑2756278                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          gtgtgacgcttcaaaaCTTAATCAGGCTTTTTTGTTGGTGACGTGACCGTCCCCAGCTGACAAGCGAATGGAAAAACTGATTAAGCATGTAGCACGGAGTATGTAGGAATTCCTGCCGG‑GGGTCCAACCCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTcc                                                                                                                                                                                                                           <  2:16069/239‑1 (MQ=255) ggTTGAATCTTTAAAACTTAATCAGGCTAGTTTGTTGGGGGCGTGGCCGGCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAGGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGGTGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTcc                                                                                                                                                                                                                           <  1:341348/251‑1 (MQ=255)             aaagtttAATCAGGCTGGTTGGTTAGGGTCGTGTGCTTGCGCAGCTGGTAAGGGAATGTAAAGACTGACTTAGCATTTAGTATCGAGGATTGAGGATTTTCGTACGT‑GTGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCTTCGGTGATTTCCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCAGGCTTTTGGTTTCCCTCAACTTGTCCCGGTATGTCCGAAGAGAACTaa                                                                                                                                                                                                               <  1:511254/246‑1 (MQ=255)             aaaaCTTAATCAGGCTAGTTGGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTaa                                                                                                                                                                                                               <  2:183677/251‑1 (MQ=255)                                    tAGTGGCGTGTCCGCCCGCAGCGGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACCCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATGAAATCCGAACCTTTTAGGcc                                                                                                                                                                                         <  2:588361/250‑1 (MQ=255)                                          ggtgtCCGTCCGCAGCGGGCAAGCGAATGTAAAGACTGTCTAAGCAGTTAGTACCGGGTGTGGAGGAATTCCGGA‑GCTGGATTCACCTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTATGCCCATTGAt                                                                                                                                                                                  <  2:281651/250‑1 (MQ=255)                                           gtgtCCGTCCGCAGCTGGCAAGCGCATGTCAAGCCAGACTAAGCATGTAGTTCCGCGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑ACAGATCCACCAAAATTCTCCATCGGTGATTACCTGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCACTGCGGGCTTTTTTGTGCCCTCCACTCGTCCTGCGAAGTCCGAAGCGAACTAATTAAATCCGACCCTTTTAGGCACATTGAt                                                                                                                                                                                  >  2:571293/1‑250 (MQ=255)                                             gcccgcccgCAGCGGGCAGGAGAAGGAAAAGACTGACTAAGCATGAAGTACCAGGGATGTAGGAATTTCGGCCGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGTCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAgg                                                                                                                                                                               <  2:178610/245‑1 (MQ=255)                                                             cAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct                                                                                                                                                               >  1:9941/1‑251 (MQ=255)                                                                 cGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg                                                                                                                                                           >  1:92533/1‑251 (MQ=255)                                                                   aaTGTAAGGACTGATTAAGCATATAGTCCCGAGGATGTGGGAATTTCGGCCGC‑GGGTTCAATTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAAGCCGGACTTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGtt                                                                                                                                                         <  1:570944/251‑1 (MQ=255)                                                                               gactAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATATGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCt                                                                                                                                             >  2:204366/1‑251 (MQ=255)                                                                                   aaGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAAc                                                                                                                                         >  1:392415/1‑251 (MQ=255)                                                                                    aGCATGTAGTCCCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAAc                                                                                                                                                                         <  1:585624/218‑1 (MQ=255)                                                                                    aGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAAc                                                                                                                                                                         >  2:585624/1‑218 (MQ=255)                                                                                     gCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGACCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg                                                                                                                                        >  2:196525/1‑250 (MQ=255)                                                                                     gCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGc                                                                                                                                       >  1:220367/1‑251 (MQ=255)                                                                                               ccGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGACGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTc                                                                                                                             >  2:177938/1‑251 (MQ=255)                                                                                               ccGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTc                                                                                                                             >  1:160220/1‑251 (MQ=255)                                                                                               ccGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTc                                                                                                                             >  1:580920/1‑251 (MQ=255)                                                                                                 gAGGATGTAGGACTTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTccc                                                                                                                           >  2:104150/1‑251 (MQ=255)                                                                                                 gAGGATGTAAGGATTTCGGACGC‑GGATTCAAATCCCG‑ACAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGCAGTCCGAAGAGACCGCACGGAGCAACCCCTGCGGGCTTTTTTGTGCCCTCACCTCGTCCCGCGAAGTCCGACGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGGTGGCCCTAAAAGCAGGGGGACGccc                                                                                                                           >  2:388784/1‑251 (MQ=255)                                                                                                  ggggtGTAGGAATTGCGGACGC‑GGTTTCAACCCCCG‑CCAGCTCCACCAAAATTCGCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGTGCGTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTATGCCCATTGATAGGCCCAACGAAAAGCTCGATGGTTTACGGTGGGCTTAAGCGCAGGGAGACTcccc                                                                                                                          <  2:554898/247‑1 (MQ=255)                                                                                                   ggatagagaaaTTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa                                                                                                                         <  2:533180/242‑1 (MQ=255)                                                                                                    gaggTAGGAATTTCGGACGC‑GGGTTAAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCAGCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTGTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCGAAACGCAGGGAGACTCCCCAt                                                                                                                        <  1:196525/248‑1 (MQ=255)                                                                                                     aTGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg                                                                                                                       >  1:324283/1‑251 (MQ=255)                                                                                                      tGTAGCAATTTCGGACCC‑TAGTTCAACTCCCG‑CCCGCTCCACCAAAATTCTCCATCGGTGATTCCCAGAGTCATCCGATGAAGTCATAAGACCCCACACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGCAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTCGGCCCATTGATAGGCCCAACGAACAGCTCTCATGTTTACGTTGGGCCTAAACGCAGGCAGACTCCCCATgg                                                                                                                      >  2:207064/1‑251 (MQ=255)                                                                                                        tAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAACATTCTCCATCGGTGATTACCAGAGTCATCCGATGCAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGc                                                                                                                     >  1:86828/1‑250 (MQ=255)                                                                                                          ggAATTTCGGACGC‑GGTTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg                                                                                                                  <  1:420324/251‑1 (MQ=255)                                                                                                           aaatgtCGGACGG‑GGGTTCAACTGCCGACCA‑CTCCAACAAAATTCTCAATCGGTGATTACCAGAGTCATACGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTTCGGTCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTGTAGGCCCATTGATAGGCCCAACTAAAAGCTCTATTGTTTACGTTGGGCATAAACGCAGGGAGACTCCCCATTGCAAGa                                                                                                                 <  2:338927/246‑1 (MQ=255)                                                                                                                             tCAACTCCCG‑CCAGCTCCAAAAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCACGCCCTGCGGGCTTTTTTGTGCCCTCAACTAGTCCCCCGAAGCCCGCAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCACAACGAAAATCTCTATTGTTTACGTTGGGCCTAAACGCCGAGAGAAACCCCTAGGCAAGACAAACCAAGCCGATAAc                                                                                                >  2:352450/1‑251 (MQ=255)                                                                                                                              aaccccccG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACt                                                                                               <  2:220367/246‑1 (MQ=255)                                                                                                                               aacccccG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGAGGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGAGAGGCCCAACGAAAAGCGCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTg                                                                                              <  2:580920/247‑1 (MQ=255)                                                                                                                               aaCTCCCG‑CCAGCTCCACCAACATTCTCCATCGGTGATTACCAGAGTCATCCGATGACGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTg                                                                                              >  2:308377/1‑251 (MQ=255)                                                                                                                                            cTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATc                                                                                   >  1:31064/1‑250 (MQ=255)                                                                                                                                              ccaccaAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCaa                                                                                 >  2:153507/1‑250 (MQ=255)                                                                                                                                                          cccATCGGTGATTACCAGAGTCATCCGAGGAAGTCCTAAGAGCCCGCACGGCGCAATCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATGGATAGGCCCAACGAAAAGCTGTATTGTTTACTTTGGGCCTAAACGCAGGGATACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCt                                                                    <  1:276097/250‑1 (MQ=255)                                                                                                                                                                ggTGATGACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGAGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACGCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGAt                                                              <  1:204366/251‑1 (MQ=255)                                                                                                                                                                    aTTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCg                                                          >  2:454278/1‑251 (MQ=255)                                                                                                                                                                                  ccGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGTTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGACCCTTTTAGGCCCATTGATAGGCCAAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCTTGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTa                                             <  1:370450/250‑1 (MQ=255)                                                                                                                                                                                    gATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGGTAACTGATACGGAAATCAAAGCCGCCCAACCTAAAGACGCCGATTACCCGCTTTAtg                                           >  2:266965/1‑250 (MQ=255)                                                                                                                                                                                         aGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtg                                     >  2:150222/1‑251 (MQ=255)                                                                                                                                                                                          gTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtg                                     >  1:402204/1‑250 (MQ=255)                                                                                                                                                                                                agagCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCt                              >  1:334200/1‑251 (MQ=255)                                                                                                                                                                                                  agCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAACGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCtt                             >  2:208843/1‑250 (MQ=255)                                                                                                                                                                                                        cACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGCAACCCGAAGAGAACTAATTAAATCCGAACAATTTCGGCCCATTGATAGGCCAAACGAAAAGCTCTATTGTTTACGTTGGGCCTAACCGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGt                      >  1:62586/1‑251 (MQ=255)                                                                                                                                                                                                         aCGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGa                                                               >  2:84913/1‑209 (MQ=255)                                                                                                                                                                                                          cGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAAAGCAGGGAGCCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACAAGCTTTATGACGGTGACGGGCTTACTCTGtt                     >  2:525661/1‑250 (MQ=255)                                                                                                                                                                                                                 aGCCCTGCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCCAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTCTGACGGTGACGGGCTTACTCTGTTAATCAAGt             >  2:255569/1‑251 (MQ=255)                                                                                                                                                                                                                       gCGGGCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGCAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTg       >  1:297033/1‑251 (MQ=255)                                                                                                                                                                                                                           gCTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAg   <  1:186985/251‑1 (MQ=255)                                                                                                                                                                                                                            cTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAt                                            >  2:333591/1‑209 (MQ=255)                                                                                                                                                                                                                            cTTTTTTGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAt                                            <  1:333591/209‑1 (MQ=255)                                                                                                                                                                                                                              tttttGTGCCCTCAACTCGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGt  <  1:208843/249‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          GGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGC‑GGGTTCAACTCCCG‑CCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGT  >  NC_000913/2755811‑2756278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑