| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,027,233 | 0 | T | A | 28.8% | 83.0 / 16.6 | 52 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| Reads supporting (aligned to +/- strand): ref base T (31/6); new base A (0/15); total (31/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.21e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAAC‑GGCGG‑TATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCC > NC_000913/4027010‑4027476 | cggCAAGTGGTGCGGGTGTTTGAACAACCGGAGGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAGC‑GGCGG‑TAGTGCAGGATCACGGTACGCGGGAAGAGCATGATTTCTATATTG‑CCGGCCGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGGGGGAA‑GAGCGCTTGTTT‑GG‑CGATGCGTTTGAATTTATCGGA‑GATATAAAAAACCCCGCCCCTGACAGGCGGga < 1:171577/249‑1 (MQ=255) ggtgCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAAC‑GGCGGGAATTG‑AGGAAAACGGGAAGCCGGGCGGGCATGATATCTATATTA‑CCGGACGATTTGAGATGGGGAAAATTTCCCGCGATCT‑GTTTT‑ACCGGGAGCGACATGAGCGGGGA‑GATCGCCTGTTT‑GG‑CGATGCGGTTGCATTTATTTGG‑GATATAAAAAAAACCGCCCCCGGCAGGCggggggaaacgg > 1:132037/1‑242 (MQ=255) ggggcgggtgttTGAACACCGGGAGGGGGGCGGGGGTGGGCGTACGGGCCCCGTGTTAAC‑GGCGT‑TTGTGGGGTAGCGCGGTACGCGGGAAGAGCTTGATATCTATATTG‑CCGGAGGTTTTGAGAGGGCGAAATTTGCCCGCGATCT‑TTTTG‑GCGGTGGGCGTAATGCGCGGAAA‑GATCGCGTGTGT‑GG‑GGATGCGTTTGCATTTTTTTTA‑GATAAAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGc < 1:589802/245‑1 (MQ=255) gggtggtAGACCACCCGGAGGCGGGTGGGCGTGGGCGTACTGGCCCCGTATTACC‑GGCGG‑TATTGCAGTATCGCGGTACGGTGGAAGAGCTTGATATCTATATTG‑CCGGCCGTTTTGGGTGGGCGAAAATGGCCGGTCATGG‑TTTTT‑GGAGTGAGCTTAATGCGCGGGAA‑GATCGCCGTTTT‑GG‑CAAGGCGTTTGAATTTATCGGA‑GATATAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTa < 1:372570/250‑1 (MQ=255) ggtggtTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGACACCGTGTTAAC‑GGCGG‑TATCGCAGAGCCACAGCAAGCTGGCACCGCATCATATCTATATTG‑CCGGGAGGTTTGAGATGGCGAAAATTGCCCCCCATCT‑GTTTTTCCAG‑GAGAGTCATGCGCGGGGA‑GATCGCCTGTTT‑GG‑CGCCGCGTTTGCATTTTTCTTC‑GATATAAAAACACCCCCCCCTGCCAGGCCGGGAGAACgggcacca > 1:240758/1‑244 (MQ=255) ggtagAACACCCGGAGGGGGGTTGGCGTGGGCGTACTGGCACCGTGTTAAC‑GGCGG‑TATGGCAGGTTCCCGGTACGCGGGCAGAGCATGATTTCTATGTTG‑CCGGTCTTTTTGAGATGGCAAAAATGCCCCGCTTTCT‑TGTTT‑GCGGTGAGCGGAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑GGATGGTTTTGCTTTTATCTGA‑GATATAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACt < 1:593515/247‑1 (MQ=255) tgaaaacccGGAAGCGGGCTGGCGTGGGCGTACGGGCACCG‑GTTAACCGGCGG‑TATTGCGGGATCACGGTCCGCTGGCAGAGAAGGATATCTATTTTG‑CCGGACGTTTTGATATGGAGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGGGGGAA‑GATCGCCTGTTT‑GG‑CGTTGCTTTTCCTTTTATCTGA‑GATATAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGt < 1:429785/243‑1 (MQ=255) tGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGCGTTAAC‑GGCGG‑GTTTGCGGGCTCACGGTAAGCCCGGAGCACACGCTTTCTATCTTGACCGG‑CGCTTTCGGGTGGGGGAAATTCGCCGCGCTCT‑GTTTT‑GTAGTGAGCGCAATGCGCGGGGA‑GAGTGCCTGTTT‑GG‑TGGTGCGGTTGCGTTT‑TCTTATGGTTTAAAAAAACCCGCCCCTGGCAGGGGGGGAGAACGGcgagtcaaaagtt > 1:280667/1‑239 (MQ=255) aacaacCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTACA‑GGCGG‑TACTGCAGGAACACCGGACCCAGGCAGCGCACGATATCTCTATTG‑CCGGCCGTTTTTCGATGGGGAAAAATGCCCGCGATCT‑GTTTT‑TCACTGCGCGGAATACGCGGGGA‑AATCGCCTGTTT‑TG‑CGGTGCGTTTGCCTTTATCTGC‑GATATAAAAAAAACCGCCCCTGACAGGCGGGGAGAAcaggaaccaaaatttttt > 1:274414/1‑234 (MQ=255) ggAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAAC‑GGCGG‑TATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTT‑CCGGACGGTTTGAGATGGCGGAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGGAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTTTCTGA‑GATATAAAAAAACCCGCCCCCGACAGGCGGGGAGGACGGccaacaaaaaggtatttagggg > 1:424564/1‑230 (MQ=255) g‑TATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAAATGGTATTCAGTGGCCTTTTGATCTATGACGTATCTGGGCAACCATGCCCGAAGCgg > 2:576745/1‑250 (MQ=255) tGCAGGATCCCGGTCCGGTGGCAGATAAGGATATCTATATTG‑CCGGCGGTTTGGAGAGGGCAAAAATTGCCCGGGATCT‑TTTTT‑GCAGTGGGCGTAATGCGGGGGAA‑GATCGCC‑GTTT‑GGGCGATGCGTTGGCATTTATCGGA‑TATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGc < 2:320659/250‑1 (MQ=255) cAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCAGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATTTGGCAAACCATGCCCGATGCCACGgtgt > 1:103285/1‑251 (MQ=255) ggATCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACCGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCTATGCGACGCAGTcg > 1:369230/1‑251 (MQ=255) aTCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTcgcg > 1:195340/1‑251 (MQ=255) tCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACGAAACTAGTATTCAGTTGCCTTTAGATCTATTACGTATCTTGCAAACCATGCCCGCTGCGAAGCTTTcgcct > 2:362489/1‑249 (MQ=255) tGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATTCCCGCTGCGACGCTGTCGGGTCTTATCCTGcc > 2:415823/1‑251 (MQ=255) agagCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTAc > 2:192691/1‑250 (MQ=255) gATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCCACTAAAATGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTTATATCGTTCCTACAAATAGTc > 2:112394/1‑251 (MQ=255) ttattttG‑CCGGCCGTTTTGAGAGGGCGAAATTTCCCCG‑GTTCTTGTTGT‑GAGGTGGGCGTAATGGGGGGGAA‑GATCGTGTGTGT‑GG‑CGATTCGTTTGCATTTATCTGA‑GATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGAGCTATGACGTATCTGGCAAACCATGCCCTATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGaa < 1:537721/245‑1 (MQ=255) gggccgtgtggggagggCGAAATTTGCCCGCATTCT‑GTTTG‑GCAGTGAGGGAAGTGCGCGGAAA‑GACCCCCGTTTT‑GG‑CAGTGGTTTTGCATTTATCTGA‑AATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCg < 2:212952/236‑1 (MQ=25) cGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCg > 1:356060/1‑251 (MQ=255) cGGACGTTTTGAGAGGGCAAAAATGCCCCGCGATTT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCTTGTTT‑GG‑CGATGCGTTTGCATTTAGCTGA‑AATAAAAAAAAACCCGCCCCTAACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCg < 1:213663/251‑1 (MQ=38) aCGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGCGGCCTTTAGATCTATGACGTATCTGGCAAAACATGCCCGATGCGAAGCTGTCGGGTCTTATCGTGCCTACAAAAAGTCCGAACCGTCGGCCGGac > 2:410243/1‑250 (MQ=255) gaTGGCAAAAATTGCCCGCGATCT‑TTTTT‑GCAGTGAGCGAAAGGCGGGGAAA‑GATCCCCTGTTT‑GG‑CGAGGCGTTTGCATTTATCTGA‑GATAAAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGttt < 1:389439/251‑1 (MQ=38) aTGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGttt > 1:198702/1‑250 (MQ=255) cGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCGACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAcgcc > 1:537066/1‑251 (MQ=255) cGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCCACTAAAATGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGCAGCGCCGCTGTCGCGTCTTATCGTGCCTACAAATAGTACGCAACGTAGGCCGGATACGGCGtgttcccc > 2:446242/1‑244 (MQ=255) cccgctgtCT‑GTTTT‑GCAGTGAGAG‑AAAGCGGGGGAAAGA‑CCCCTGTTTTGG‑CGAGGGTTTTGAATTTATCGGA‑AAAAAAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:195340/244‑1 (MQ=21) cccGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGCAGGCCGGATAAGGCGGTTACGCCGCATCCGGc > 1:432653/1‑251 (MQ=255) cccGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCACCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGc > 1:337557/1‑251 (MQ=255) ccgcgtgtt‑GTTTG‑GCAGTGGGCTTAGTGCGCGGGAG‑GACCGCTGGTTG‑GG‑CTGTGCGTTGGAATTTATCGGA‑GATATAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACGGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCTTGCCTACAAAGAGTCCGAACCGTAGGCCGGATAAGGCTTTTACTCCTCATCCGGCa < 2:274414/243‑1 (MQ=255) gcgATCT‑TTTTT‑GCAGTGAGCGGAGGGGGCGGGAA‑GATCCCCGGTTG‑GG‑GGAGGCGTTTGCATTGAGCTGA‑GAAAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATGCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt < 1:264907/251‑1 (MQ=25) gTTTT‑GCAGTGAGCGTAAGGCGGGGAAA‑GATCGCTTGTTT‑GG‑CGAGGCGTTTGCATTTATCTGA‑GATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGt < 1:213661/248‑1 (MQ=37) gAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGGGCATGATGCCTgg > 1:122209/1‑250 (MQ=255) ggttAATGCGGGGAAA‑GATCGCGTGTTG‑GG‑GGATGTTTTTGCTTTTATCTGA‑GATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAAGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATg < 1:370101/248‑1 (MQ=25) aTGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGAAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGCTCTATGACGTATCTGGCAAACCATGCCCGCTGCGACGCTGTCGCGTCTTATCGTGCCTCCAAATAGTCCGAACCGTAGGACGGATAAGGAGTTTTCGCCGCATCCGGCAATTGGTGCCTGATGCCTGATGCGAcc > 1:85360/1‑250 (MQ=255) ggAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGAAGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTcgg > 1:161618/1‑250 (MQ=255) gagtgtcgcttttttgcggaggggTTTGCTTTTTTCTGA‑ATTAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGGGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTcgcg < 1:521109/228‑1 (MQ=21) aTCGCGTGTTG‑GG‑CGATGGTTTTGCATTTATCTGA‑GATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCtt < 1:196626/251‑1 (MQ=255) gccttttggg‑CGATGCTTTTGCTTTTATCTGA‑GATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATc < 1:415823/243‑1 (MQ=255) cTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCACTGACAGGCGGGAAGAACGGCGACTAAAGAGATATTCAGGGGGATTTAGATCTATGACGTATCTGGCCAACCATTCCCGATGCGACGCTGTCGCGTATTATCGTGCCTACAAATAGTCCGAACCAGAGGCCGGATAAGGCGGTTACGCCGCCTGCCGCCATTGGTGCATGAAGACTGGTGCGACGcggtagccgcacggaa > 1:285036/1‑235 (MQ=255) gTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACACGCCCCTGACAGGCGGGAAGAACGGCAACTAAAATGTTATTCAGTGGCATTTAGATCCATGACGTATCTGGCAAACACTGCCCGCTGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCCGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGc > 1:235112/1‑251 (MQ=25) gg‑CGATGCGTTTGCATTTCTCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTTTGGCGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCCTCAAATAGTCCGAACCGTAGGCCGGGTAAGGCGTTTACCCCGCATCCGGCAATTGGTGCATGATGCCTGATGCgcagatggagcggcttttcgtgccta > 1:462509/1‑225 (MQ=25) gg‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGGAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGGTAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCTCGCCTAc > 2:192861/1‑251 (MQ=255) g‑CGATGCGTTTGTATTTATCGTA‑AATAAAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACa < 1:352583/251‑1 (MQ=255) cGATGCGTTTGCATTTATCTGA‑GATATACAAAACCCCGCCCCTGACAGGCGGGATGAACGGCCACTTAACTGTTCTTCCGCGGCATTTAGATCTATGACGTATCTGGCCAACCATGACCGATGCGCCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCCAACCGTTAGCCGGATAAGGCGGTTACGCCGCCTCCGGCAATTGGGGCCTGATGCCTGCTGCGACGCTGTCGCGTCTTATCGGGCCTACa > 2:550164/1‑250 (MQ=21) gATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACCGCAACTAAACTGCTCTTCAGAGGCATTTAGATCTATTACGGATATGGCAAACCCTTCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACCCCGCATCCCGCCATTGGTGCATGACGCCTGAAGCGACGCCGGCGCGCCTTATCCTGCCttcac > 2:316445/1‑246 (MQ=21) ttGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTCAACTTTTATTCAGTGGCATTTAGATCTATGAAGTATCTGGCAAACCATGCCCGGTGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGCACCGTAGGCCGGATAATGCGTTTACGCCGCCACCGGCAATTGTGGCATGATGCCTGATGCGACGCCGTCACGGCTTTTCCTGCCCACAAATataccc > 2:158608/1‑246 (MQ=25) tctttttATGTGA‑GATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCg < 1:88912/246‑1 (MQ=255) gtcagttatcgaa‑gaTATAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTAGTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACAGTAGTCCGGATAAGGCGTTTACGCCTCATCCGGCAATTGTTGCATGATTCCTGATCCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGa < 1:387072/239‑1 (MQ=25) tGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGACTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGcc > 1:375851/1‑251 (MQ=255) | CTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGGCGTACTGGCACCGTGTTAAC‑GGCGG‑TATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTG‑CCGGACGTTTTGAGATGGCGAAAATTGCCCGCGATCT‑GTTTT‑GCAGTGAGCGTAATGCGCGGGAA‑GATCGCCTGTTT‑GG‑CGATGCGTTTGCATTTATCTGA‑GATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCC > NC_000913/4027010‑4027476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |