| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,004,132 | 0 | G | A | 25.4% | 126.0 / 14.9 | 64 | A16V (GCT→GTT) | rarD | putative transporter RarD |
| Reads supporting (aligned to +/- strand): ref base G (12/35); new base A (16/0); total (29/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.30e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACTAGTAGCAGTAAAACGCTCGCCCCTGCCTGGGCG > NC_000913/4003885‑4004370 | atGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCg < 2:69000/250‑1 (MQ=255) aaaCAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGTCAAGAGCGAGTAATACGCCCTGc < 1:466200/250‑1 (MQ=255) cAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTGAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGAGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑cgcg < 1:346473/251‑1 (MQ=255) aGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAAGGCTCATCAGCACCACCATAAAGAAAAACGACCAGAGCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACGCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCgt < 1:273781/251‑1 (MQ=255) ccaATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGcatccat < 2:96947/251‑1 (MQ=255) aTCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCgg < 1:273234/251‑1 (MQ=255) gCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTaa < 1:437405/214‑1 (MQ=255) cAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAAACAACTTGAAGTAAGCTGGCGCCCTTCCCCCCA‑AAAAAAAAACGGCAAGAGCGGGGAATAAGCCCCGC‑CGCGGTTGTTTTTCCTCCATCGGGGATACTcct > 2:590979/1‑249 (MQ=255) cAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACCTCGTAAATTAACTTGAAGTACACCTGCGCTATACCCCCAA‑AAAAAAAAACGGCCAGAGAGAGTAAAAAGCCCTGC‑CGCGTTTGTTTTTcatccacccgggaaactcct > 1:372247/1‑237 (MQ=255) agagACAGCCCGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAAGAAATCAACTTGAAGTACGCTGGCGCTATTCCCCCCA‑AAAAATAAACGGCAAGAGGGAGGAATACGCCCCGC‑CGCGTTTGTTTTGATTCCATCCGGGATACTcctt > 1:148856/1‑248 (MQ=255) aCTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTACGCCGGCGCTATACCCCAAA‑TAAAAAAAACGGCAAAAGCGAGGAATACGCCCTGC‑CGCGGTTGTTTTGTTTCCATCCGGAAAACTCCtttttt > 1:133986/1‑250 (MQ=255) tttCTGTGGCGGCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACATCAGtt < 2:30081/250‑1 (MQ=255) catgtgGCGTCGGAATCAGCGTTGTTAAATAGGACCACGGGCGTCAAATGCGCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTACATCGGCGTGCACGTAGTAAATCAGCTTGAACTACGCTGGCGCGATACCCCAAA‑TAAAATAAGCGGCAAGTTCGAGGAATACGCCCTGC‑AGCGTTTGTTTTGGATCCATCCCGAATACGTATTTTT‑AATTTTTAACAGCATTTTAc < 2:255394/249‑1 (MQ=255) gtgGCGGCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCt < 2:148856/250‑1 (MQ=255) tgGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGACTTCATCGGCGGGCACGTAGTAAATTAACTTGAAGTACGCTGGCGCTCTACCCCAAA‑TAAAATAAACGGCAAGAGCGAGGAATACGCCCTGC‑CGCGGTTGTTTTTCATCCATCGGGAATATTCATTTTT‑TATTGGGAACAGCAGTTTATCTGc > 1:460839/1‑251 (MQ=255) ggCGTCTGAAACAGCGTGTTTAAATAGGACCACTGGCGGCAAATGCGCATCAGCACCACCATAAAGAAAAACGACCAGAGCACGCGATGCGTCAGGATTGCAGCGGCGGGCACGTAGTAAATCAACGTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CTCGTTTGTTTTGCATCCAGCGGGAAGACTCATGTTT‑AATTGGTAACAGCAGGTTATCTGCt < 2:35625/251‑1 (MQ=255) gTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCAtttt < 2:16816/222‑1 (MQ=255) gTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAAGACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCtttt < 2:506698/251‑1 (MQ=255) gTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAAACCACTTGAAAGACGCTGGCGCTTTACCCCAAA‑TAAAAAAAACGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTTTATCCCTCGGGGATAATCATTTTT‑GATTggaagaggacccgtccgaaccccc > 1:16816/1‑229 (MQ=255) gAATCAGCGTTTTTAAATAGGACCACAGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTAt < 1:256006/249‑1 (MQ=255) aaTCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTc < 2:68617/251‑1 (MQ=255) cAGCGGTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTGTATttcttc < 2:262661/251‑1 (MQ=255) gCGTTTATAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTTCCTGCTTTTATGTCTTCaa < 1:459336/251‑1 (MQ=255) ccccTGGCGGCAAATGCGCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCAGCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATCCCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAAGACGCCCTGC‑CGCGTTTGTTGTGGATCCATCGGGAATACTCATTTTT‑AAGTAGTAACAGCATTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAggtgg < 1:595024/248‑1 (MQ=255) ggcggcAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGAGCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGTGAATACTCAGTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAggtggcggt < 1:282505/250‑1 (MQ=255) ggcAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCa < 2:109167/251‑1 (MQ=255) ggcAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGGAAAACAAATTTAAGTAAGCTGGCGGCATACCCCAAA‑TAAAAAAAACGGCAAGAGCGAGGAATAAACCCTGC‑CCCGTTTGTTTTGCAACCAACGGGGATACTTATTTTT‑TATTTGTAACAGCAGGTTACCCGCTTTTATTTTTTCAACCTACCATA‑TAggtggggggggg > 1:11538/1‑243 (MQ=255) aTGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGc < 1:448102/251‑1 (MQ=255) gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGCCGAAGGAAAACAACTTGAAGAAAGGGGGGGCCCGACCCCAAA‑AAAAATAAACGGAAAGAGGGGGAGAAAAGCCCCGA‑CGCGGTTGTTTTTCATCCATCGGGGATAATTAATTTT‑AATTGGTACCAGCAGTTTACATGCTTTTATGTCTTCAAACTACCaacaaggggggggggggcagggca > 2:163613/1‑227 (MQ=255) caGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATGTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATaaa < 1:517866/251‑1 (MQ=255) ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCCCGCAGGAAAACAACTTGAAGTACGGCGGCGCCATACCCCCCA‑TAAAAAAAACGGCCAGAGCGAGTAATACGCCCCGC‑CGCGGTTGTTTTTCATCCCTCGGGGAAACTACTTTTT‑TATTTGTTACCGCCGTTTTCCTGCCTTTATTTCTTCAAACTACCATAATag‑tggcggtgggccttgcactataaacatgt > 2:421111/1‑231 (MQ=255) accaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCCCGGCGTAAAACAAAATGAAGAACGCTGGGGCTCTATCCCAAA‑TAAAATAAACGGGCAGAGAGGGTAAAACGCCCTGC‑CCCGGTTGTTTTTCATCCATCGGGGAAACTCATTTTT‑TATTGGTTACAGCAGGTTATCTGCTTTTTTTTCTTCAACCTACCATA‑TAGGTGGGGGGGGCACTGGCTATATAAAGCTGttt > 2:33329/1‑250 (MQ=255) caTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGttctt < 1:281206/251‑1 (MQ=255) caTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATAAACTTGAAGTACGCTGGGGGTATAACCCAAA‑TAAAATAAGAGGGAAAAGAGAGGAATACACCCTGC‑CGCGTTTTTTTTTGATCCCTCGGGGATACTCATTTTT‑TATTGGTAAAAGCAGTTTAACTGCTTTTTTTTTTTCAACCTAACCTA‑TAGGGGGGGGGGGCACTGGCAAAATaaaaaggttttt > 1:428833/1‑242 (MQ=255) gAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATtgt < 1:326610/251‑1 (MQ=255) aaaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCCCGGAGAAAATCAACTTGAAGTAAGCTGGCGCTATTCCCCAAA‑TAAAATAAACGGCCAGAGCGGGGAATACGCCCTGC‑CGCGTTTGTTTTTcatcca > 1:376310/1‑141 (MQ=255) aaaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGcatcca < 2:376310/141‑1 (MQ=255) aaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCCCGGAGGAAAACAACTTGAAGTAAGCCGGCGCTTTACCCCCAA‑TTAAATAAGCGGCAAGAGCGAGGAATACGCCCCGC‑CGCGGTTGTTTTTCTTCCCTCCGGAAGACTCCTTTTT‑TATTGGTAACAGAAGTTTACCTGCTTTTTTTTCTTCTACCCACCATA‑TATGTGGTGGGGGGGCTGGCAATATAAAACTTTTCTTTCTTgtgtt > 2:440825/1‑250 (MQ=255) aaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCCCGCAGGAAAACAACTTGAAGTACGCTGGCGCTATACCCCCAA‑TAAAAAAAACGGCAAGAGCGAGGAAAACGCCCTGC‑CCCGGTTTTTTTTCATCCATCGGGGATACTCATTTTTTATTTGGTA‑CAGTAATTTTACTGCTTTTTTGTCTTCAACCTACCATA‑TATGTGGGGGTGGCGCTGGCACTATAAAGCTGTTTTTCATTttgtg > 2:10601/1‑250 (MQ=255) aaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACCCAGAAAATCAACTTGAACAACGCAGCCGCTAAACCCCAAAATAAAA‑AACCGGCAAGAGAGGGTAAAAAAACCTGCACAGGTTT‑TTTTTAATCCATCAGGAATAATACTTTTT‑TATTTGTAAAAACAGTTTAACCGCTTTTATGTATTCCAACTACCCTA‑TTTGTGGCGGTGGCCCTGGCAATATTAAACTGTTCTTCATTTTGTa > 1:274408/1‑250 (MQ=255) cAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAAc < 1:419771/251‑1 (MQ=255) aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGGAAAACAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAAAAAACGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGTATCCATCGGGAATACTCATTTTT‑TATTGGTAACAGCAGTTTACCTGCTTTTTTGTCTTCAACCTACCCTA‑TAGGTGGCGGTGGGACTGGCAATATAAAACTGTTCTTCATTGTTTAATTCAAcc > 1:168520/1‑250 (MQ=255) aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑AAAAAAAAACGGCAAGAGCGAGGAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAAAAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGGGGCACTGGCAATATAAAACTGTTCTTCATTGTGTAATTCAAcc > 1:235555/1‑250 (MQ=255) cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGc < 2:517660/214‑1 (MQ=255) cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAAGTCAACGCGggcgacggcga < 1:443028/251‑1 (MQ=255) cGTCAGGATTTCATCGGCGGACCCGTAGTAAATCAAATTGAAGGAAGGTTGCGCTTTACCCCCAA‑TAAAAAAAAAGGCAAGAGCGAGGAAAACGCCCTGC‑CGCGTTTGTTTTGTATCCATCGGGGATACTCATTTTT‑AATTTGTAACAGCAGTTTACCTGCTTTTATGTCTTCAAACTACCATA‑TTCGTGGGGGTGGGCCTGGGAATATAAAGc > 1:517660/1‑214 (MQ=255) gTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAAGCTGGCGCTATACCCCCAA‑TAAAATAAACGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTTTGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTTGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGggggacggcgac > 1:113589/1‑251 (MQ=255) cggcggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGc < 2:74159/250‑1 (MQ=255) ggcggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGCGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCAc > 2:398382/1‑251 (MQ=255) aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAAc > 1:207078/1‑249 (MQ=255) aTCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACtagt > 2:217329/1‑251 (MQ=255) cAACTTGAAGTACGCTGGCGCTATAACCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACtagt > 1:477946/1‑249 (MQ=255) ccgtGAAGGACGCTGTGGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCTAGTAATTCGCCCTGC‑CGCGTTTGTTTTGCGTCCATCGGGAATACGCAGTTTT‑AATTTGTAACAGCAGTTTACGTGCTTTTATGTCTTCAACCTACCATA‑TATGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTAGTTCCTGCACGCAACAGGCTACTAGTAGCa < 2:197545/248‑1 (MQ=255) gAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAgg > 2:238391/1‑235 (MQ=255) gAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAgg < 1:238391/235‑1 (MQ=255) aCGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCCTTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATACAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACCGGTTACTCGTAGCAGTAAAACGc > 2:576567/1‑251 (MQ=255) gCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACTAGTAGCAGTAAAACGCTc < 2:460839/251‑1 (MQ=255) gcgcTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACTAGTAGCAGTAAAACGCTCGccc > 2:152317/1‑251 (MQ=255) ccccAAA‑TAAAATACGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCaa > 2:521057/1‑148 (MQ=255) ccccAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCaa < 1:521057/148‑1 (MQ=255) cccAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACTAGTAGCAGTAAAACGCTCGCCCCTGCCTggg < 1:431114/251‑1 (MQ=255) cAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACTAGTAGCAGTAAAACGCTCGCCCCTGCCTGGgcg > 2:316039/1‑251 (MQ=255) aaGCTGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTAt > 1:323932/1‑186 (MQ=255) aaGCTGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTAt < 2:323932/186‑1 (MQ=255) | ATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAA‑TAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC‑CGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT‑AATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATA‑TAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGACTTTATTGCCTGCACGCAACAGGCTACTAGTAGCAGTAAAACGCTCGCCCCTGCCTGGGCG > NC_000913/4003885‑4004370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |