| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,930,718 | 0 | T | G | 27.9% | 94.4 / 12.2 | 64 | T126P (ACC→CCC) | ravA | regulatory ATPase RavA |
| Reads supporting (aligned to +/- strand): ref base T (6/38); new base G (16/1); total (25/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.47e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GACCTGCAAGGCATCAGGAACCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGCGGGCC > NC_000913/3930473‑3930958 | gACCTGCAAGGCATCAGGAACCGGATTGTCGTTTTACTCATGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTa > 2:44509/1‑250 (MQ=255) cAGGAACCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGcc < 2:213665/250‑1 (MQ=255) gAACCGGATTGTCGTTTTCATCCTTTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAGCTGGCGCTCGTTAAGGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCt < 1:335877/251‑1 (MQ=255) aaCCGGCTTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GG‑CAGGGATTCAGAAATTCCGGGCCCGCtt > 1:163858/1‑251 (MQ=255) aaCCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GA‑AAGGTATTAAGAATTGGCGGGCCCggtt > 1:325861/1‑248 (MQ=255) aCCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGTATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCttt < 2:56697/251‑1 (MQ=255) gATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAg < 2:163858/251‑1 (MQ=255) gTTTTCATCCTGTTGACTGGTCCGCATGGAGCGGAAATTCGCTTTCTCCTGCACTTTATCTAACCCCAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGCGGCCGCCACCAGCAGCCGCATCGGGCTTTTTTCTCCGTGTGCCCCGTTGCGGAACTGGCGCTCGTTAATGGCGGTTATGT‑ATGG‑ATTTAGAATTTCCGGGCCCGCtttgcacacctcgt > 2:238564/1‑240 (MQ=255) gTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGCGG‑GC‑GAGGGATTAAGAATTGCCCGCACCGCCTTCCAGATCTCCTCCCGAAAGAc > 2:202029/1‑250 (MQ=255) aCTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCCGATCTCATCCAGAAAGACAAttt > 1:466186/1‑251 (MQ=255) aGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTc < 2:408094/251‑1 (MQ=255) cATGGAGCGGAAATGCGCTTTATCCTGCTCTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCGTCCAGACTGCTGTCTGCTTCCGGCATCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTTTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATGAAGAATTGCCGCGCCCCCTTTCCAGATCTCAGCCAGAAAAACAATTTCTGCTTCCg < 2:378793/251‑1 (MQ=255) tCGCTTTATCCTGCCCTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCt < 2:147192/250‑1 (MQ=255) aTCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTAAGAATTGCCGGGGCCGCTTTTCCGATCTCATCCAGAAAGAAAATTTTTGCTTTCGGCAgggaaacccggggttaa > 2:529466/1‑235 (MQ=255) gCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCa < 1:216448/251‑1 (MQ=255) gCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTGCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGTGCCCGCTTTCCAGATCTCATCCAGAAATACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGtt < 2:558032/249‑1 (MQ=255) cACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGGA‑GC‑AAGGTCTTAAGAATTTCCGGGCCCGCTTTCCCGATATCCTCCCGAAAGACAAATTCTGCTTCCCGCCGGGAACCCCTGGGTT‑AAA‑GTTCAt > 2:394010/1‑251 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACGGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTGTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAAGGGCGGTGA‑GC‑AAGGTATGAAGAATTGCCGGGCCCGCTGTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAgcg < 2:385893/250‑1 (MQ=255) aCCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCa < 2:466186/251‑1 (MQ=255) aGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGATGGAGGCCGACACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGAATTAAAAAATGCCGGGCCCGCTTTCCCCATCTCATACACAACAACAATTTTTGCCTCAAGCCGGTAAACGCTGG‑GT‑AAAccgtcatcacgtcctttcctt > 1:371361/1‑229 (MQ=255) aGACGAATCAGCATGCGGTCATATAACCCTTCCATACTGCGGTCTGCTGCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGGGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGAGCTCATCCAGAAAGACAATTTCTGCTTCCGGAAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCTTTCATCt < 2:371361/249‑1 (MQ=255) gAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAgc < 1:394010/251‑1 (MQ=255) cAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTAAGAATTTCCGGGGCCGCTTTCCAGATCTCATACAGAAAGAAAATTTCTGCTTCCGGGAGGGAACCGCTGGGTT‑AAA‑GGTCATAgcagatcggaagagcaaacctgt > 1:425390/1‑230 (MQ=255) cAGCATGCGGTCAGATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAgc < 2:425390/230‑1 (MQ=255) cATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGCGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GG‑AAGGGATTTAAAATTGCCGGGCCCGCCTTCCAGATCTCCTCCAGAAAGACAATTTCTGCTTCCGGCAGGGAACCCCTGG‑GT‑AAAAGTTCATTGAGCCCTTTATCTTTTaaagcctg > 1:98400/1‑242 (MQ=255) ggCGGTCATATAACGCTTCCAGACAGCTGTCTGCTTGCGGCAGCGCGGTGGAGGCCGCCTCCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTTGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑GT‑AAACGTTCATAGCGTCCTTCGTCTTTTAGCGCCTGAATa < 2:219059/250‑1 (MQ=255) cGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTAAGAATTTCCGGGCCCCCTTTCCAGGTCTCATCCCGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑GT‑AAACGTTCATAACGCCCTTCATCTTTTAGCGCCTGAAt > 1:2015/1‑248 (MQ=255) ggTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GC‑AAGGTATTAAGAATTTCCGGGCCCGCTTTCCAGCTCCCATCCAGAAAAACCAATTCTACTTCCGGCAGGGAACCGCCGG‑TT‑AAACGTTCAAAGCCCCCTTCATCttttttcacctgaagtga > 2:137509/1‑236 (MQ=255) cATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑g < 2:193682/250‑1 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTTAAAATTGCCGGGGCCGCTTTCCCGATCTCATTCAGAAAGACAAATTTTGCTTCCGGCAGGTAACCGCCGG‑TTTAAAC‑TTTATTGCGCCCCTCCTCTTTTatgatcggcaggggggcgg > 2:77781/1‑233 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTGTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTa < 1:77781/233‑1 (MQ=255) aaCGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTATCGCCTGAATAGAAA‑GGGGAc < 1:129498/250‑1 (MQ=255) cTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGACGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGCTGCGGAACTGGCGCTCGTTAATGGCGGTGT‑GC‑CAGGTATTAGGAATTTGCGGGTCCCCTTTTCAGCTCGCATCCCGAAAGACAATTTCTTCTTCCGCCAGGGAACCGATGG‑TT‑TAACGTTCTTTGCGCCACTCATCTTTTTGCGTCTGTCTAAAAA‑GGGGAcctaa > 1:302031/1‑247 (MQ=255) gACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAGCTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑GT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAActtct < 1:126665/251‑1 (MQ=255) gctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATCAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCg < 1:326226/251‑1 (MQ=255) gTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑TC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCg < 1:240597/251‑1 (MQ=255) tCTGCTTACGGAAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGTACTGGCGCTCGTTAATGGCGGTGG‑GCCAGGGGATTA‑GCATTTCCGGGCCCGCTTTCCCGATCTCATCCAGCAAGACAATTTCTGCTTCCGGCCGGGAACCGCTGG‑GT‑TAACGTTCATAGCGCCCTTCCTCTTTTAGCGCCTGAATAGAAA‑GGGGGCCAAAAACTTTTTCCcgcgg > 1:433487/1‑250 (MQ=255) cTTCCGGCATCTCGTTGGAGGCCGCCGCCAGCAGACGCATCGGGATTTTGTCTACGTTGGCGCCGGTGCGGAACTGGCGCTCGGTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGTGCCCGCTTTCCAGATCACATCCAGAAAGACAATTTCTGCCTCCGGCAGGTAACCGCTGG‑TT‑AAAc < 1:304670/183‑1 (MQ=255) tCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCAGCTTTTAGCGCCGGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGgaga < 2:90530/250‑1 (MQ=255) aGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGATAATGGCGGTGA‑GC‑AAGGTATTAAGAATGGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCGTCATCTTTGAGCGCCTGAATTGAGA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGt < 1:399661/251‑1 (MQ=255) cGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTAAGAATTTCCGGGCCCGCTTTTCAGATCTCATCCAGAAAGACAATTTCTTCTTCCGGCAGGGAACCGCTGG‑TT‑AAACGTTCCTAGCGCCCTTCCTCTTTTAGCGCCTGAATAGAAA‑GGGGGCCAAAAACTTCTTCCGGCGTGGAGAAGCGGGtcatc > 1:115307/1‑251 (MQ=255) ggAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCCACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGat < 2:9400/251‑1 (MQ=255) ggAGGCCGCCACCAGCAGACGAATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTCATGGCGGAGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCCTTCCAGCTCTCATCCAGAAAGACAAATTCTGCTTTCGGCAGGGTACCGCTGG‑GT‑AAACGTTTATAGCGCCCTTCCTCTTTTAGCGCCTGAATAGAAAAGGGGCCCAAAAA‑TTCTTTCGGCGTGGAGAAGCGGGGCATCAGa > 2:558207/1‑250 (MQ=255) ggCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATTGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTTG‑TT‑AAACGTTCATAGCGCCCTGCATCTTTTAGCGCCTGAATAGAAA‑GGGTACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATAtt < 1:546063/251‑1 (MQ=255) ccaccaGCAGACGCATCGGGATTTTTTCTCCGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCTGGTCATCAGATATTCAAAc < 2:337440/251‑1 (MQ=255) ccaccaGCAGACGCATCGGGATGTTTTCGTCGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCGTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATATAAA‑GGGGAGCAAAAACTTCGTCCGGCGTGGAGAAGCGGGTCATCAGATTTGCAAAc < 2:302031/251‑1 (MQ=255) cagACGCCTCGGGATTTTTGCTACGTGTGCAACGTTGCGGAACTGGCGCTCGTTAATGTCGGTGA‑GC‑AAGGTATGAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCGGCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAATCTTCTGCCGGCGTGGAGAAGCGGGTCATCAAATATGCAAACGCGCggg < 2:300516/251‑1 (MQ=255) agACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCCTAGCGCCCTTCATCTTTTAGCGCCCGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGGCATCAGATATTCAAAcgaccgggc > 1:319490/1‑244 (MQ=255) gCATCGGGATTTTTTCTACGTGTGCCCCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGC‑GC‑AAGGGGTTAAGGATTTCAGGGCCCGCTTTCCAGATTTCATTCCGAAAGACAATTTTTGCTTCCGGCAGGTAACCGCTGG‑GT‑AAAAGTTCATAGAGCCCTTCATCTTTTATCGCCCGAATAGAAA‑GGGGAACAAAAAATTCTTCCGGCGTGGGGAAGCGGGTGATCAGATATTTAAAAGCGCGGGCATTc > 2:45435/1‑251 (MQ=255) ttttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTGCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGa < 2:289077/250‑1 (MQ=255) ccaCGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATACAGAAAGACAAGTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCAGTCTGAAAGGCGAAtttt < 2:382899/249‑1 (MQ=255) tACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATGAATAATTGCCGGTCCCGCTTTCCAGATCGCAGCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGt < 1:78069/133‑1 (MQ=255) gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTAAGAATTGCCGGGCCCGCCTTCCAGATCTCATCCAGCAAAAAAATTTTTTGTTCCGGCCGGTAAACGCTGG‑TT‑CAACGTTCCAAGCCCCCTTCCTCTTTTAGCGCCTCAATAGAAA‑AGGGGCCAAAAACTTCTTTCGGCGTGGGGAACCGGGTGATCCGATATTTAAACGCGCGGGCACTCCGAGAGGCGAATTTTAAgg > 2:7396/1‑250 (MQ=255) cACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GC‑CAGGGATTTAGAATTGCCGGGGCCGCCTTCCCGATCTCATCCCGAAAGACAATTTCTGCTTCCCGCAGGGAAACCCTGG‑GT‑AAACGTTCATAGCGCCCTTCATCTTTTTGCGCCTGAATAGAAA‑AGGGACCAAAAACTTCTTCCCGCGTGGAGAAGAGGGGCATCAGAAATTCAAACACGCGGGCATTTTGGAAGGCGGATTTTTAGCGCCgg > 2:153023/1‑251 (MQ=255) cACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTTAGAATTGCCGGGCCCGCTTTTCAGATTTCATCCCGAAAGACAATTTCTGCTTTCGGCAGGGAACCGCTGG‑GT‑AAAAGGTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGGCCCAAAACTTCTTCCGGCGTGGAGGAGGGGGGCATCAGATATTTAAAAGCGCGGGGATTCTGAAAGGCGGATTTTaaaggccgg > 1:230821/1‑244 (MQ=255) aCCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGGATTTAGAATTGCCGGGCCCGCCTTTCACATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAAAGTTCATAGCGCCCTTCCTCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTTCCGCGGGGAGAAGCGGGGCATCAGAAATTCCAACCCGCGGGGCTTCTGAAAGGGGGAtttttagggaccgg > 2:242341/1‑241 (MQ=255) cGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGTTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCg < 1:462081/251‑1 (MQ=255) tGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCTTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGAt < 1:529466/250‑1 (MQ=255) gCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATc < 1:426799/250‑1 (MQ=255) cGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AACGAATTTAGAAATGCCGGGCCCGCTTTTCAAATCTCCTCCAGAAAGAAAATTTTTGCTTCCGGCAGGGAACCGCTGG‑GT‑TAACGTTTATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑AGGGACCACAAACTTCTTCCGGCGTGGGGAAGCGGGGCATCAGATATTTCAACGCGCGGGCCGTCTGAAAGGGGAATTTTAAGCGCCGGGCggtaa > 2:356548/1‑246 (MQ=255) tgcgcTCGTTAAGGGCGGTGA‑GC‑AAGGGAATAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCGTCCGGCTTTGACAAGCGGATCATCAGATATGCAAACGCGCGGACATGCTGTAAGGCGAATCTTAAGCACCGGGCGATCAAACttt < 2:532083/248‑1 (MQ=255) cGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAAt < 1:202029/250‑1 (MQ=255) cGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGAGCAAACTTTTGGCAATa < 2:433487/251‑1 (MQ=255) gTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGCGGGcc < 1:312347/251‑1 (MQ=255) | GACCTGCAAGGCATCAGGAACCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GC‑AAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGG‑TT‑AAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAA‑GGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGCGGGCC > NC_000913/3930473‑3930958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |