New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 134040125 (0.390)3 (0.050) 3/486 3.7 4.3% coding (159/309 nt) lapA lipopolysaccharide assembly protein A
?NC_000913 = 4409719 109 (1.720)coding (445/732 nt) rlmB 23S rRNA 2'‑O‑ribose G2251 methyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATG  >  NC_000913/1340151‑1340648
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         
aTTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCTGTATTGTTTGCTGCGG‑GGttt                                                                                                                                                                                                                                                           <  2:150593/251‑1 (MQ=255)
      cAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTACTGTGCACTATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATc                                                                                                                                                                                                                                                     >  1:49149/1‑251 (MQ=255)
           ggCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCggttg                                                                                                                                                                                                                                                >  1:359883/1‑251 (MQ=255)
                 aaaaTGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTACTGTGAAATATTTACTCATTTTCTTACTGGAGTTAGCGATCTTCGAGATTTCGGTCACATTGGGAGCGCAGAACGATCAACAGGAGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGACGGTATATTTTGCTCCGGTGGtttctttcgggttgttggt                                                                                                                                                                                                                                           >  2:27422/1‑235 (MQ=255)
                  aaaTGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGAtt                                                                                                                                                                                                                                         <  1:345655/251‑1 (MQ=255)
                                 gggCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTgg                                                                                                                                                                                                                          <  1:192239/251‑1 (MQ=255)
                                  ggCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGc                                                                                                                                                                                                                         <  2:186585/251‑1 (MQ=255)
                                   gCTATCGCGGTAAGTTGCCCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCCG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGcc                                                                                                                                                                                                                        >  2:289587/1‑250 (MQ=255)
                                          cGGTAAGTTGACCAAAATTTAGTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGtt                                                                                                                                                                                                                 <  1:568866/251‑1 (MQ=255)
                                                gTTGTCCATTATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACGCATTTTCTTACTTGTGTTAGCGATCTTCGTGATTTCGGTCACTTTTGGTGCGCAGAACGATCAACATGTGACGTTTAAGTATCTGTTAGCGCAAGGGGAGTACCGTATTTTCAGATTGCTGGCGGTATTGTTTGCTGCGG‑TGTTTGGTTTCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGtt                                                                                                                                                                                                           <  1:378141/251‑1 (MQ=255)
                                                gTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTCTTGTTTGCTGCGG‑GGTTTTCTATCGGTTGGGTGATTTGTGGCCTGtttttgcggcggggtcgtgtt                                                                                                                                                                                                           >  2:214288/1‑232 (MQ=255)
                                                   gACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGGGTTCGTGTTTcc                                                                                                                                                                                                        >  1:257205/1‑251 (MQ=255)
                                                     ccATAATTTATTCGCTATAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTAACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGTGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGTCTGTTCTGGTTGCGAGTTCGTGTTTCCCt                                                                                                                                                                                                      >  2:461225/1‑251 (MQ=255)
                                                                 cGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTg                                                                                                                                                                                          <  1:333115/250‑1 (MQ=255)
                                                                                                                        tgtTAGCGATCTTCGTAATTTCGGTCACGTTGGGTGAGCAGATCGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGCGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGATATCGGTTGGTTGATTTGTGGGCTGTTCTGGGTGCGAGTTCGTGGTTCCCTGGCGCGCGGTTGAA‑GTGAAATAAAGAGGAC‑GGAAAACCAGCTTTCACCCGCGACTGGCGTGGCTGt                                                                                                                                  >  2:356884/1‑250 (MQ=255)
                                                                                                                           tAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGt                                                                                                                               <  1:230499/250‑1 (MQ=255)
                                                                                                                                     cGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGt                                                                                                                                                                                                                               <  1:381269/146‑1 (MQ=255)
                                                                                                                                             cGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAgcggc                                                                                                             <  2:359883/250‑1 (MQ=255)
                                                                                                                                                    gctGGGTGCGCAGAACGATCAACAGTGGACGGTTAATTATCTGTTAGCGCAAGGGGAGTACCTTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGTCTGCGAGGTCGGCTTTCCCTGGCGCGCG‑CTGAACGTGAAAAGAAG‑CGTCTGCAAAACCAGGTTGCGCCCGCGACTGACGCGGCTGTAGTGCCGCACTCGTCTGGGGCGGAGGAAt                                                                                                     <  2:229983/249‑1 (MQ=255)
                                                                                                                                                    gTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCGGTTAGCGCAAGGGGAGTACCGTAGTTCCACATTGCTGGCGGTATTGTGTGCTGCGG‑GGTTTGCTAGCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCGGTCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCTCGACTGACGt                                                                                                                                        <  2:271641/216‑1 (MQ=255)
                                                                                                                                                         gTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACtt                                                                                                <  1:148445/251‑1 (MQ=255)
                                                                                                                                                                                                    gcAAGGGGAGTACCGTCTTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGGTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGGGTTCGTGTTTCCCTTGCGCGCG‑CTGAACGTTAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCCGCGGCGGAGGAATAAATTTTTATGCTGGGGTTGTTGTTTTTGCTTTTGCCTGTAGCCGCTg                                                     >  2:35340/1‑251 (MQ=255)
                                                                                                                                                                                                    gcAAGGGGAGTACAGTATTTCCACATTGCTGGCGGTAATGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGACGTAGTGCCGCACTCGTCAGCGGCGGAGGAATAACTTTCTATGCTGGGGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTg                                                     >  1:184544/1‑251 (MQ=255)
                                                                                                                                                                                                         gggAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTGGTTTCTGCTTTTGCCTGGAGCCGCTGCCTAt                                                <  2:392956/251‑1 (MQ=255)
                                                                                                                                                                                                                                                        gTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATg  <  1:27422/251‑1 (MQ=255)
                                                                                                                                                                                                                                                           tGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAgcggcg                                                                                                            <  2:181287/142‑1 (MQ=255)
                                                                                                                                                                                                                                                           tGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAgcggcg                                                                                                            >  1:181287/1‑142 (MQ=255)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         
ATTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATGTGAAATATTTACTCATTTTCTTACTGGTGTTAGCGATCTTCGTGATTTCGGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCAAGGGGAGTACCGTATTTCCACATTGCTGGCGGTATTGTTTGCTGCGG‑GGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCG‑CTGAACGTAAAATAAAG‑CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATG  >  NC_000913/1340151‑1340648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.