| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,291,598 | 0 | A | G | 29.8% | 118.1 / 13.0 | 67 | D271D (GAT→GAC) | ccmH | holocytochrome c synthase CcmH component |
| Reads supporting (aligned to +/- strand): ref base A (12/35); new base G (20/0); total (32/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.90e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCTCTTCTTCGTTGAGCGGATCGGCTTTCGGATCCAGCGCCCT > NC_000913/2291356‑2291843 | ttttATTTCCTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCTGTTGTCGGTGGGATCAGa < 1:181763/248‑1 (MQ=255)ttttATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCTCGATACTACGTTCAATCCCCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg < 1:101475/250‑1 (MQ=255) ttaCTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTTGTTGGGGGCAGATggacaggg > 2:174709/1‑244 (MQ=255) ttaCTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCAGAGGAAccagg > 1:267273/1‑247 (MQ=255) aCTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTc < 1:174709/250‑1 (MQ=255) ccTGCGGCGACAAATGTTGCAGCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAc < 1:100539/248‑1 (MQ=255) gggcgACAAATGTTGCATACCCTGCACGATCCTACGTTCAATCCCCGCACGGCGAGTATCGTTGGCAGGTTAGGATTTCAACATCATCGCCCACGCGGCAACGGCTACGCCAAATCGCTGCTGCTCAAAGGCATTCAGCGCATACATGCTTAGCGCACGGAAATTGCTATGGTCCGTTCTCTCCTGCTGACGTAGCAGTACCCCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAg < 2:150950/250‑1 (MQ=255) aaTGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTGGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATccc < 1:43916/251‑1 (MQ=255) gTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGt < 1:85897/251‑1 (MQ=255) gTTGCACCGCCTGCGCGATACTACGTTCAATCCCCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGt < 2:427923/251‑1 (MQ=255) cATCGCCGGCGCGATACTACGTTCAATCCCCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTAGGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgca‑g < 2:585613/251‑1 (MQ=255) aTCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGATTTTGTTGGGGGCAGATGAACGGGTCAACGCTTCAGCGTATTCCAgggccgc > 1:643791/1‑245 (MQ=255) tCGCCTGCGCGATACTACGTTCAATCTCCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATGAAACGCATACATGCTTAGCACACGTATATTGCTATGGTCCGTTCGCACCAGCTGACGTGGCAATGCACCGCCGAGGCGGTGGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgca‑gc < 1:33518/250‑1 (MQ=255) gcgcGATACTACGTTCAATCACCGCACGGCGAGTATCGTGGGCAGGGAAGAGTTTCAACATCGTCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCAGTAAACGCATACATGCTTAGCACACGGATATTGCTATGTTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTGGTCGTTGGGAGCAGATGAACGATTCAACGCTTCAGCGTAGCCCAGGGCA‑GCATCAc < 2:643791/249‑1 (MQ=255) ccgagactacGTTCAAGCCCCGCGCGGCGAGTATCGTGGGCAGGGAAGAGTTTCAACAACATCCCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAATCAACGCTTCAGCGGATCCCAGTGCA‑GCATCACTG‑tt < 2:267273/246‑1 (MQ=255) tactacGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGCTGTCTTTTGGGTCCGAAGAACGAGTCCACCCTTCAGCGCATCCCAGTGCC‑GCATCACTG‑tttttt > 1:573498/1‑250 (MQ=255) tacGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTAGTTTGGGTCAGATGAACGAGGCACCGCTTAAGCGGATACCCGTGGC‑GCATCACTG‑ttttttggg > 1:245506/1‑247 (MQ=255) acGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGGTGGTGGGGTCCGGAGAAAGAGGCAACCATTCAGCGTATCCCCGTGGC‑GGATCACTGGTTTTTCggt > 1:669363/1‑250 (MQ=255) gTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTTTCGTTGGGGTCAGATGAACGAGGCAACGCCTCAGCGTATCCCCATGCC‑GCATCACCG‑TTTTTCGGATCg > 1:558715/1‑251 (MQ=255) tCAATCACCGCCCGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTTGGGTCAGATGAACGAAGCAAACCCTCAGCGGCTCCCCGTGCA‑GCCTCCCTG‑ttttttgggtcg > 2:404618/1‑242 (MQ=255) cAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCAGATGGACGAGTCAACGCTTCAGGGTATCCCAGTGCA‑GCCTCCCTG‑TTTTTCGGATCgggg > 1:336190/1‑248 (MQ=255) gCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCATATGAACGCGTCAACGCTTCAGCGTATCCCAGTGCA‑GCCTCACTG‑TTTTTCGGATCgggggggaaagc > 2:183349/1‑240 (MQ=255) cACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGGTGGGGTCAGATGAACGAGTCCAAGCTTCAGCGGATCCCAGTGCA‑GCATCCCTG‑TTTTTTGGATCGAGGCGATACGcc > 1:231012/1‑250 (MQ=255) gAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCg < 2:222253/251‑1 (MQ=255) tGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGGC‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCCGTGGCGTATGCATCg > 1:508809/1‑251 (MQ=255) tGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATc < 1:586435/250‑1 (MQ=255) tGGCAGGTAAGAGCTTCAACACCCTCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGGTGGGGTCCGATGAACGCGGCAACGCTTCCGCGTATTCCCGGGCC‑GCCTCCCTT‑TTTTTCGGGTCGGGGCGGTACCCAGTGGCGTATGCATcc > 2:107051/1‑250 (MQ=255) aaGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCCAAGCCTCAGCGGATCCCCGTGCA‑GCATCACCG‑GTTTTCGGGTCGAGGCGATACGCAGTGGCGTATggctcgggtgcgcg > 2:370130/1‑238 (MQ=255) gagTTACAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATAc < 1:59636/251‑1 (MQ=255) gaatttCAACATCATCCCGCACGCGGCAACGGCTTCGCCAAATCGTTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGGTATGGTGTGTTCTCACCAGGTGACCGAGCAGTTGACCGCCGAGGCGGTTGTCGTTTGGATCAGATGAACGGGTCAACGCGTCGGCGTATCCCAGTTCAAGAAGC‑CTG‑TTTTTCGTATCGAGGGGATACGCTGTGGGGTATGGATCGGTGCCGAtgc < 2:304272/248‑3 (MQ=255) agTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTAAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTAGGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACt < 2:196973/251‑1 (MQ=255) tCAACATCATCCCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAACCGCATACAGGCTTAGCCCACGGATATTGCTATGGTCCGTTCTCACCAGCGGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGGTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAGCCCAGTGCA‑GCATCTCTG‑GTTTTCGGTTCGAGTCGAGACGCAGTGGCGTATGCATCGGTGGCTATACTGGc < 2:432967/250‑1 (MQ=255) aCATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGGTGGGATCAGGTTGACGAGTCAACGCGTCCGCGGATCCCCGTGCA‑GCATCACTG‑TTTTTCGGATACAGGCGCGACGCCATGGGGTAAGCACCCGTGGCGATACTGCCGttt > 2:132662/1‑250 (MQ=255) atcatcTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCCGATGAACGAGTCAACGCCTCAGCGGATCCCAGTGCA‑GCATCACTG‑TTTTTCGGAACGAGGCGATACGCAGGGGCGTATGCATccggggggatcatggcggtaac > 2:564186/1‑230 (MQ=255) cGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCAGATGAACGAGGCAAAGCTTCAGCGTATCCCCGTGCC‑GCATACCTG‑GTTTTTTGATCCAGGCGGTACGCAGTCGCGGATGCATCGGGGGCGATACTGGCGTTACCCAGCGCCACTCCAACGCgg > 2:424552/1‑251 (MQ=255) ggCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAAGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGGATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGc > 1:462170/1‑251 (MQ=255) ccAAATCGCTGCTGCTCAAAGGCAGTAAACGCATACATGCTTATCACACGGATATGGCTAGGGTCCGTTCTCCCCAGCTGACGTAGCAGGTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGGCAACGCGTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCTATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACAt < 2:669363/251‑1 (MQ=255) tcccaccacgacgcccgtccgatctcGCATACTTGCTTGGCACACGGATATTGCGATGGTCCGTTCTCACCAGCTGGCGTAGCAGTGCACCGCCGAGGCGGTTGTCGGTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTGTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTTGCGATACTGGCGTTACCCAGCGCCAGGCCAACGCGGCCCAACATAAt < 2:615919/225‑1 (MQ=255) gctCAAAGGCATTAAACGCATACATGCGTAGCCCACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCtt < 2:55590/249‑1 (MQ=255) gCATTAAACGTATCCATTCTTAGCACACGGATATTGCTATGGCCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTGGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCTTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTcc < 1:657659/251‑1 (MQ=255) gCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGGACGAGGCAACGCTTCAACGTATCCCAGAGCA‑GCATCACTG‑TTTTTTGGGTCGAGGCGATACGCAGTGGCGTCTGCATCGGTGGCGATACTTGAGGTACCCACCGCCAAGCCCACGCGGCCCACAATAAAC‑CAGCCCTCTATATCTcc > 1:340491/1‑251 (MQ=255) aTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCAGATGAACGAGTCAACGCTTCCGCGTATCCCCGTGCA‑GCATCACTG‑TTTTTCGGGTCGAGGCGATACGCAGt > 1:242589/1‑168 (MQ=255) aTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGt < 2:242589/168‑1 (MQ=255) cGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGAtttt < 1:301824/251‑1 (MQ=255) gCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGAttttt < 1:149858/251‑1 (MQ=255) aTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAAGAGTCAACGCTTCAGCGTATCCCCGTGCA‑GCCTCACTG‑TTTTTCGGGTCGAGGCGCTACGCAGCGGCGTAAGCATCGGTGGCGCTCCTGGCGTTACCCTGCGCCCTGCCAACGCGGCCCAACCTAATA‑CATCCATTTATCTCTCCCGGAttttttt > 2:89692/1‑251 (MQ=255) cATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGAGAATCCCCGAGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACCCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGGCTTCTATATTTCCCGGGTTTTTTTGcc > 1:673282/1‑250 (MQ=255) aTGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGGATCCCAGTGCA‑GCATCACTG‑TTTTTCGGGTCGAGGCGATACGCCGTGGCGGATGCCTCGGTGGCGATACTGGCGTTTCCCAGCGCCACGCCCACGCCGCCCCACCTAAAC‑ACGCCCTCTTTTTCTCCCGGGttttttttc > 2:606557/1‑247 (MQ=255) tGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGCTACGCAGTGGCGTATGCACCGGGGGCGATACTGGCGTTACCCACCGCCATGCCAACGCGGCCCAACATAAAC‑ACGCCTTCTTTATCTCCCGGAATTTTTTGccgt > 2:524996/1‑248 (MQ=255) gCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCACCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGt < 2:231012/250‑1 (MQ=255) gagcccacGGATATTGCTATGGTCCGTTCCCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAg < 2:349917/246‑1 (MQ=255) cacGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCAAATGAACGAGTCAACGCTTCAGCGTATTCCAGTGCA‑GCATCACTG‑TTTTTTGGGTCGAGGCGATACCCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCCAGCCAACGCGGCCCAACATAATT‑CAGCCTTCTATATCTCCCGGATTTTTTTGCCGTTGAGTACGc > 1:370126/1‑251 (MQ=255) aTGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGCTGGGGTCAGAAGAAAGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑GTTTTCGGATCGAGGGGATACGCAGTGGCGTATGCATCGGGGGCGATACTTGCGTTACCCAGCGCCATGCCAACGCGGGCCAACATAATC‑CCGCATTTTATATCTCCCGGGTTTTTTTGCAGGTGAGTACGCATCCCCCGCGCa > 1:341441/1‑250 (MQ=255) ggTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCCGTGGGGTCAGATGAACGAGTCAACCCTTCAGCGTATCCCAGTGCC‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATTCATCGGGGGCGATACTGGCGTTACCCAACGCCCTGCCCAAGCGGCACAACATAATCACA‑CCTTCTATATCTCCCCGGTTTTTTTGCAGTTTAGTACGCATCCCCAGCGCa > 1:235181/1‑248 (MQ=255) ggTCCGATCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGGTCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGGTGAGTACGCATCCCCAGCGCa > 1:532056/1‑248 (MQ=255) gTCCGTTCCCACCGGCTGACGTAGCAGTTCCCCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACGG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCAGCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTAGATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGAc < 2:109464/251‑1 (MQ=255) cccgtgctccccagcgtaCGTAGCATGTCACCGCCGAGGCGGTTGTCGTTGGGAGCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGAcg < 2:336190/234‑1 (MQ=255) gTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATTGACGAGGCAAAGCTTCAGCGTATCCCAGTGCC‑GCCTCACTG‑TTTTTTGGGTCGAGGGGGTACGCAGTGGGGTATGCATCGGGGGCGGTTCCGGCGGTTCCCCGCGCCCAGCCAACGCGGCCCCAAATAAAC‑CCACCCTCTCTATTTCCCGGGTTTTTTTTCAGGTGGATTCGCATCCCCCGCGCAAGAcgcgg > 2:33966/1‑250 (MQ=255) ccAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCTATACGCAGGGGCGTATGCATCGGTGGCGATACTGGCGTTACTCAGCGCCATTGCAACGCGGCCCAACATAAGC‑CAGCCTTCTATATCTCCCGGATTTTTCTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATctct < 1:313005/251‑1 (MQ=255) gCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCtcttct < 1:564186/251‑1 (MQ=255) gCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGGCAACGCTTCAGCGGATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGGGGCGATACTGGCGTTACCCAGCGCCATGCCAAAGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCtcttct > 1:197422/1‑251 (MQ=255) gACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCTCttcttc < 1:424552/250‑1 (MQ=255) cAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGTCGCGACAGCTCTTCTTCGTTGAGCg < 1:155169/251‑1 (MQ=255) cgccgAGGCGGTTGTCGTTGGGGTCAGAAGTACGAGTCAAAGCTTCAGCGGATCCCAGTGCA‑GCCTCAATG‑GTTTTCGGATCGAGGCGATACGCAGTGGCGTGTGCATCGGTGGCGGTACTGGCGTTACCCCGCGCCATGCCAACGCGGCCCAACATAATC‑CCGCCTTCTATATCTCCCGGATTTTTTTGCTGTTGAGGACGCATCCCCCCCGCCAGACGCGACAACTCTTCTTCGTTGAGCGGGTCGGcc > 2:495996/1‑250 (MQ=255) ccgAGGCGGTTGTCGTGGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TGTTTCGGATCGAGGCTATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCAGGCCAACGCTGCCCAACATAATC‑CAGCCGTCTATATCTCCCGGATTTTGTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCTCTTCTTCGTTGAGCGGATCGGCttt < 1:633459/251‑1 (MQ=255) cgAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCTCTTCTTCGTTGAGCGGATCGGCTTTc < 1:606557/251‑1 (MQ=255) ttGGGATCAGATGAACGAGTAAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCACCCCCAGCGCAAGACGCGACATCTCTTCTTCGTTGAGCGGCTCGGCTTTCGGATCCAGCGCCCt > 1:258083/1‑251 (MQ=255) | TTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA‑GCATCACTG‑TTTTTCGGATCGAGGCGATACGCAGTGGCGTATGCATCGGTGGCGATACTGGCGTTACCCAGCGCCATGCCAACGCGGCCCAACATAATC‑CAGCCTTCTATATCTCCCGGATTTTTTTGCAGTTGAGTACGCATCCCCAGCGCAAGACGCGACATCTCTTCTTCGTTGAGCGGATCGGCTTTCGGATCCAGCGCCCT > NC_000913/2291356‑2291843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |