| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3216779 | 3270031 | 53253 | 21 [0] | [0] 21 | [nfeR]–yhaC | [nfeR],aer,patA,ygjH,ebgR,ebgA,ebgC,ygjI,ygjJ,ygjK,fadH,higA,higB,rlmG,ygjP,ygjQ,ygjR,alx,sstT,ygjV,uxaA,uxaC,exuT,exuR,yqiM,yqjA,mzrA,yqjC,yqjD,yqjE,yqjK,yqjF,yqjG,yhaH,yhaI,yhaJ,yhaK,yhaL,cyuA,cyuP,tdcG,tdcF,tdcE,tdcD,tdcC,tdcB,tdcA,tdcR,yhaB,yhaC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216778 | 0 (0.000) | 21 (0.430) +GTC |
20/478 | 1.1 | 100% | intergenic (‑287/‑1) | nfeF/nfeR | NADPH‑dependent ferric‑chelate reductase/DNA‑binding transcriptional repressor NfeR |
| ? | NC_000913 | 3270032 = | 0 (0.000) | intergenic (+430/+184) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
GCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCACGCCATGAGGGCTGCTGCAAAGGTGAGAAGTCAGAACACGAGCACTGCGGACACGGTCACCAGCATGAACACGGTCAATGCTGCGGTGGTCGCCACGGTCGCGGCGGCGGTCGTCGGCAACGTTTCTTTGGTCACGGTGAATTACGTCTGGTGATTCTGGATATTCTCTCGCGCGATGACAGCCACGGTTACGAATTGATTAAA > NC_000913/3216538‑3217027 | gCAAATGATAATGATTTTAAATCATGAAAAAGGCAAGCGATTTGTAGAACTAATATTTTAATATGCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGGTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATAGATCTAATTAAGCAAAAGGAGGCTGATgtctcgtgga < 2:379061‑M1/251‑11 (MQ=255) tgatTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATCTGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcat > 2:279277‑M1/1‑230 (MQ=255) gTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTTATgtctcgtggacagtcattcatttttt > 1:262865‑M1/1‑225 (MQ=255) aaTCATGATAAAGGCAAGCGTTTTGTAGAACGAATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctg < 2:15666‑M1/250‑29 (MQ=255) tAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcg < 1:2348‑M1/220‑7 (MQ=255) tAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcg > 2:2348‑M1/1‑214 (MQ=255) aGCGATTTGTAGAACTGATATGTCTAGAGTCTGATAAGCCGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaa < 1:279277‑M1/251‑46 (MQ=255) aCTGATATGTCTATAGTCTAATAAGACGCACCGCCTATTCTCCGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGCCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCCAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtcccgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcg > 2:289247‑M1/1‑193 (MQ=255) ccGCCTCTTCCCAGGATTCAGTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCGCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctcaaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggttaaactgacc < 2:370535‑M1/251‑89 (MQ=255) cagcattacTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGAGGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGAGATAAATTAGATATTTCTAATTAAGCAAAGGGGGGCTGATggctcgtggacagtcattcatcttgctgcgccgccaaaagtaaaaccccgccgaagcgggtttttacgtaaaccaggggaaactgaccgataatccgctttct < 2:208422‑M1/248‑104 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGAAATATCTAATTAAGCAAAAGGAGGCTGATttctcgtggacagtcattcatctttcggcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtc < 2:413952‑M1/251‑119 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacaggcattcatctttctgcccctccaaaagcaaaagcccgccgaagcgggtttttacgtaaaccatgtgaaacggaccgataagccgctttcttttgggtatagcgtcgtgg < 1:140954‑M1/251‑123 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggac < 1:245511‑M1/251‑125 (MQ=255) aCGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctc < 1:304526‑M1/249‑148 (MQ=255) aTTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggttttt > 1:84569‑M1/1‑72 (MQ=255) atatCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttctgtcgtgg > 1:143644‑M1/1‑28 (MQ=255) cTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggggaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaa > 2:101946‑M1/1‑24 (MQ=255) aaGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttctgtcgtggacagtcattcatct > 1:442129‑M1/1‑12 (MQ=255) aaGGAGGCTGATgtatcgtggacagacattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttctgtcgtggccagtcattcatct > 1:145524‑M1/1‑12 (MQ=255) gATgtctcgtggacagtcattcatctttctgcccctcccacagcaacaacccaccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgacgtggacagtcattcatctttctgcccctccaaaagcacaaacccgccgaagcgggtttttacgtagatcaggtgaaactgaccgataagccgggttctgtcgtggacagccattcatcaaggcaagcaat > 1:283715‑M1/1‑3 (MQ=255) aTgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaagcgaaactgaccgataagccgggatctgtcgtggacagtcattcatctaggccagcactc > 1:133240‑M1/1‑2 (MQ=255) | GCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCACGCCATGAGGGCTGCTGCAAAGGTGAGAAGTCAGAACACGAGCACTGCGGACACGGTCACCAGCATGAACACGGTCAATGCTGCGGTGGTCGCCACGGTCGCGGCGGCGGTCGTCGGCAACGTTTCTTTGGTCACGGTGAATTACGTCTGGTGATTCTGGATATTCTCTCGCGCGATGACAGCCACGGTTACGAATTGATTAAA > NC_000913/3216538‑3217027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |