| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,600,215 | +C | intergenic (‑26/+23) | yjjA ← / ← dnaC | DUF2501 domain‑containing protein YjjA/DNA replication protein DnaC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,600,214 | 1 | . | C | 97.1% | 121.9 / ‑4.0 | 35 | intergenic (‑25/+24) | yjjA/dnaC | DUF2501 domain‑containing protein YjjA/DNA replication protein DnaC |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (16/18); total (16/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGGCACAGCACAGAAGATGTTTAACAGTTTTCATCATCATTACTCAAGGTGGAATTGTGTCG‑C‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTTGATGATCACTTTTTCG > NC_000913/4599971‑4600439 | gtgcgtgtggtcaccggtatcagtttcggttttgtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGtat > 1:186818‑M2/238‑251 (MQ=255) caccggtatcagtttcggttttgtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGaa < 1:21237‑M2/24‑1 (MQ=255) atcagtttcggttttgtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCCGAAACGGGGAt > 2:253790‑M2/220‑251 (MQ=255) cggttttgtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCCGAAACGGGGATTAATActc > 2:163825‑M2/212‑251 (MQ=255) ttttgtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCttt > 2:381776‑M2/209‑251 (MQ=255) ttgtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTa < 1:219341‑M2/44‑1 (MQ=255) gtcttctacgtactggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCt > 1:330636‑M2/205‑251 (MQ=255) actggaccagatcttcggcccgctgacgttggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGc < 1:113540‑M2/57‑1 (MQ=255) tcggcccgctgacgtgggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATcc < 2:26387‑M2/71‑1 (MQ=255) ggtttatggcatcccgccgatcatcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCca < 1:37801‑M2/88‑1 (MQ=255) ggatttccgccgatcagcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTg < 2:336376‑M2/95‑1 (MQ=255) gccgatcaacggcgccctgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctggTGTGTCGCC‑AGTATACCGCCAGAAACGGGGAGTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCTCCCACAAACTGTTACCCAg < 2:309536‑M2/103‑1 (MQ=255) ccgatcagcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcgtcgtgcatgccggaTGTGTCGCC‑AGTATACCGCCAGAAGCGGGGATTAATACGCTTGACCTGTTACCCGGCTACGGGAGCGATCCCAGTTGAAGATCACCCACAAACGGTTACCCAgg < 2:410976‑M2/104‑1 (MQ=255) catcggcgcactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCAt < 2:409074‑M2/109‑1 (MQ=255) ggcgcactgttgccaagcgcaaacttcttcttaatccgcatgtggctgttaaagagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagagtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAACCGGGGATTCATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACgg > 1:391013‑M2/139‑251 (MQ=255) cactgttgccaagcgccagcttcttcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaggctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACCGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTcc > 1:24944‑M2/135‑250 (MQ=255) tcttaatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACt < 1:383287‑M2/138‑1 (MQ=255) aatcagcctgtggctgttaatgagaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTTCCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACATACTGGTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCa < 1:32659‑M2/144‑1 (MQ=255) gtggctgttaatgtgaaaagcgtaaccgaaggaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcggtcattcctgaTGTGTCGCC‑AGTATGCCGCCAGAAACGGGGATTAATACTCTTTTCCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACTGTCCATCACGCGTTCGCCCAGCAACGTGGTCATCTCTTCCat < 2:299563‑M2/154‑1 (MQ=255) agaaaatcgtaaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTc < 2:186818‑M2/167‑1 (MQ=255) taaccgaatgaacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattccttaTGTGTCG‑CAAGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATccc < 2:385918‑M2/175‑1 (MQ=255) agccgaatgaacgaataaagggagggaaagctccctttattattgttagcaaagtgtgcttcgttccttcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCCACGGCAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGTTCCATCACGCGTTCGCCCAGCACCTTGGTCAACTCTTCCATATTACTGTTGGTCAGCATCCCgg > 2:154060‑M2/75‑251 (MQ=255) aatgaacgaataaagggagcgaaagctccctttattattgttagaaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGAAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGATCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTg > 1:284366‑M2/70‑249 (MQ=255) aacgaataaagggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGtt > 1:1297‑M2/66‑251 (MQ=255) ggagcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGaagaag > 1:45754‑M2/55‑249 (MQ=255) agcgaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAgcg > 2:79466‑M2/53‑251 (MQ=255) gaaagctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAgcggcg > 1:398476‑M2/50‑251 (MQ=255) gctccctttattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATcg < 2:261605‑M2/206‑1 (MQ=255) tattattgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCt < 1:79466‑M2/213‑1 (MQ=255) tgttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTATTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTtgat > 1:70359‑M2/32‑251 (MQ=255) gttagcaaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTtgat < 1:253790‑M2/220‑1 (MQ=255) aaagtgtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTTGATGATCACt > 2:91411‑M2/25‑251 (MQ=255) gtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTTGATGATCACttttt < 2:269081‑M2/231‑1 (MQ=255) gtgcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTTGATGATCACttttt > 1:269081‑M2/20‑250 (MQ=255) gcttcgttcattcctgaTGTGTCGCC‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTTGATGATCACTTTTTCg < 1:381776‑M2/233‑1 (MQ=255) | GTTCATGTTATCTGCGCTTAAGGCCTGGTTTCCGCTGCTAAGCAAGTTAGTTAATGACGCGAGCGACCAACCGCCTTCCTGTGTCGTGCTGTTTTGGTTGCCAAGTTCGCTGGCGGCGCTGGAGAGCGCATCTTTCCAGGACGCAGCATGCACCCCGGTGGAAATTAATGCGCTGGCGGCAATGGCACAGCACAGAAGATGTTTAACAGTTTTCATCATCATTACTCAAGGTGGAATTGTGTCG‑C‑AGTATACCGCCAGAAACGGGGATTAATACTCTTTACCTGTTACCCGGCTACGGTAGCTATCCCAGTTGAAGATCACCCACAAACTGTTACCCAGGCGCATACGGTCCATCACGCGTTCGCCCAGCAACTTGGTCATCTCTTCCATATTACTGTTGGTCAGCATCCCGGTTGGGCGTTTGGAAGAAGAGCGGCGATCGACGATCTGGTTGATGATCACTTTTTCG > NC_000913/4599971‑4600439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |