Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,086,996 Δ13,531 bp yiiGrhaT yiiG, frvR, frvX, frvB, frvA, rhaM, rhaD, rhaA, rhaB, rhaS, rhaR, rhaT

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4086996 4100526 13531 42 [0] [1] 42 yiiG–rhaT yiiG,frvR,frvX,frvB,frvA,rhaM,rhaD,rhaA,rhaB,rhaS,rhaR,rhaT

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40869950 (0.000)41 (0.670) 37/490 0.3 100% intergenic (+146/‑7) fdhD/yiiG sulfurtransferase for molybdenum cofactor sulfuration/DUF3829 domain‑containing lipoprotein YiiG
?NC_000913 4100527 = 0 (0.000)intergenic (‑2/‑283) rhaT/sodA rhamnose/lyxose:H(+) symporter/superoxide dismutase (Mn)

ACGCTTGCTGTAGAAGTGGCTGAGCGCTGTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGAAGCTCCCGTTGCAAAAGCAGAAGCTAAACCTGAAACACCTGCGCAACCGGTGGTCGATGAACAAGCGGTTTTCGACGAAAAAAT  >  NC_000913/4086745‑4087234
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                               
ccgtttGCTGGAGAAGTGGCTGAGCGCTGTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGc                                                                                                                                                                                                                                                 <  2:88496/247‑1 (MQ=255)
  gCTTGCTGTAGAAGTGGCTGAGCGCTGTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCtt                                                                                                                                                                                                                                               >  2:53628‑M1/1‑249 (MQ=255)
         gTAGAAGTGGCTGAGCGCTGTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatc                                                                                                                                                                                                                                         <  1:249616‑M1/250‑9 (MQ=255)
                            gTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgt                                                                                                                                                                                                                     >  2:329653‑M1/1‑223 (MQ=255)
                            gTAATCTGACACTGGTAGGGTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcg                                                                                                                                                                                                                      <  1:290644‑M1/250‑28 (MQ=255)
                                              gTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatg                                                                                                                                                                                                   <  1:406377‑M1/251‑47 (MQ=255)
                                                 tttGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagg                                                                                                                                                                                                >  2:469420‑M1/1‑202 (MQ=255)
                                                          cGGGTCGGGCAAAGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATGTTATTATTTGATGTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTGTCATTTATTATGTTCACTCGCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtctcgtcacatctccgacgagatgagggtaaacatc                                                                                                                                                                                       <  2:403484‑M1/251‑59 (MQ=255)
                                                           gggTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcg                                                                                                                                                                                      >  2:144852‑M1/1‑192 (MQ=255)
                                                                        gTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaa                                                                                                                                                                         <  1:117147‑M1/251‑73 (MQ=255)
                                                                              aCCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaaccttt                                                                                                                                                                    <  1:451237‑M1/250‑78 (MQ=255)
                                                                                ccATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgc                                                                                                                                                                 <  1:79961‑M1/251‑81 (MQ=255)
                                                                                     cGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgtt                                                                                                                                                            >  1:358247‑M1/1‑166 (MQ=255)
                                                                                                   aattaattAAAATAAGTACTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcg                                                                                                                                               >  1:241607‑M1/1‑152 (MQ=255)
                                                                                                   aatcaattaaaataAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgt                                                                                                                                              >  1:241623‑M1/5‑152 (MQ=255)
                                                                                                                    ccTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcctatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacg                                                                                                                              <  1:332339‑M1/250‑116 (MQ=255)
                                                                                                                      tGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatccttctcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttcctggcaataacggc                                                                                                                            >  2:77762‑M1/1‑133 (MQ=255)
                                                                                                                        cGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcatt                                                                                                                         <  1:235518‑M1/251‑121 (MQ=255)
                                                                                                                                   aaaTTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgat                                                                                                              >  1:332458‑M1/1‑120 (MQ=255)
                                                                                                                                     atttcaggaCTTATTCATTTCTTGAATTTTATTATTTTATTTATAAACAAAAGGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgccttttgccgccgttgtcgatttactggcaatcacggcattaagtggttgattt                                                                                                            <  2:452851‑M1/247‑134 (MQ=255)
                                                                                                                                             aCTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAACTGCGTGTCGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATCTTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatatccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttctcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcac                                                                                                     >  2:376120‑M1/1‑110 (MQ=255)
                                                                                                                                                               ttttattattttattTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgc                                                                                  >  1:452878‑M1/1‑92 (MQ=255)
                                                                                                                                                                  tattattttattTATAATCAAAATGTTTGTAGTGGCTTTTTCCTGTTTCATTTATTATGTTCACTCTTTTAGCAGTATATTTATAAGGCttcttatcctcatcatttttctacgcgtcccatctccgacgatatgcttgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcatgaagtgggtgatttgcttcacatctcgggcattttcctgcaa                                                                                <  2:383513‑M1/250‑162 (MQ=255)
                                                                                                                                                                      attttatttATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaaccttccgcctgctgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaacc                                                                            >  1:22187‑M1/1‑85 (MQ=255)
                                                                                                                                                                               ataAACAAAGTGCTTGTAGTGGCGTTTTCTTTTTTCATTTATTATTTTCACTCTCTTATCTATATATTTATAAGGCtttttagcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttac                                                                  <  2:328800‑M1/251‑176 (MQ=255)
                                                                                                                                                                                 aaaCAAAAAGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttctcgatttactggcaatcacggcattaagtgggtgatttgattcacatctcgggcattttcctgcaaaaccataaccttacg                                                                 >  2:324561‑M1/1‑74 (MQ=255)
                                                                                                                                                                                   aCAAAATGCGTGTAGTGTCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgctgcacatctcgggcagtttcctgcaaaaccatacccttacgaaa                                                              <  1:111278‑M1/251‑180 (MQ=255)
                                                                                                                                                                                    cAAAATGCGAGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtctcatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgcccccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggncttttcctgcaaaaccatacccttacgcta                                                              >  2:222979‑M1/1‑71 (MQ=255)
                                                                                                                                                                                       aaTGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagt                                                           >  1:408911‑M1/1‑68 (MQ=255)
                                                                                                                                                                                            gtgtAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggc                                                      >  1:127566‑M1/1‑63 (MQ=255)
                                                                                                                                                                                                           cTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgcgtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccataaccttacgaaaagtacggcattgataatcattttc                                      >  1:482520‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                            ttttttCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcttcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaccctttcgactgttgccgccgttgtcgctttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcataaccataccctaacgaaacgtacggcattgatactcattttc                                      >  2:366225‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                                    tttATTATGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatcatt                             >  1:80611‑M1/1‑39 (MQ=255)
                                                                                                                                                                                                                     ttattaTGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgagtcccatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttggcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcaaatctcgggcattttcctgcaaaaccataaccttacgaaaagtacggcattgataatcattttcaatatcattt                            >  2:447218‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                                        ttatGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggggatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatcatttaat                         >  2:81754‑M1/1‑35 (MQ=255)
                                                                                                                                                                                                                          atGTTCACTCTCTTATCTATATATTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatcatttaatt                        >  1:395019‑M1/1‑33 (MQ=255)
                                                                                                                                                                                                                                        aTCTATATATTTATAAGGCttcacatcctcatcatttttcgtcgcatcacatctacgacgagatgagtgaaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattacgtgggtgatttgcttcacatctcgggcattttcttgcaaaaacatacacttacgacaagtacggcatttataatcatttacattatcatttacataactataatgaaacc         >  2:334850‑M1/1‑19 (MQ=255)
                                                                                                                                                                                                                                            atatatTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatcatttaattaactataatgaaccaac       <  1:53628‑M1/249‑235 (MQ=255)
                                                                                                                                                                                                                                                atTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgcgatgagtgtaaaactcgtgctgtcgattaacatttcgcctgttgccgccgttgtagatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagaacggcattgataataattttcaataacatttaattaacaataatgaacaaactgctt  >  2:20802‑M1/1‑11 (MQ=255)
                                                                                                                                                                                                                                                atTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgaggtgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatcatttaattaactataatgaaccaactgctt  >  2:305930‑M1/1‑11 (MQ=255)
                                                                                                                                                                                                                                                atTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatnatttaattaactataatgaaccaactgctt  >  2:242699‑M1/1‑11 (MQ=255)
                                                                                                                                                                                                                                                atTTATAAGGCttcttatcctcatcatttttcgtcgcgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttgcttcacatctcgggcattttcctgcaaaaccatacccttacgaaaagtacggcattgataatcattttcaatatcatttaattaactataatgaaccaactgctt  >  1:315747‑M1/1‑11 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                               
ACGCTTGCTGTAGAAGTGGCTGAGCGCTGTAATCTGACACTGGTAGGTTTTTGTAAACCGGGTCGGGCAACGGTTTATACCCATCCGCAGCGTTTGAGCAATTAATTAAAATAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGAAGCTCCCGTTGCAAAAGCAGAAGCTAAACCTGAAACACCTGCGCAACCGGTGGTCGATGAACAAGCGGTTTTCGACGAAAAAAT  >  NC_000913/4086745‑4087234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: