| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 65,857 | 12940 bp→GA | [araD]–[setA] | [araD], araA, araB, araC, yabI, thiQ, thiP, thiB, sroA, sgrR, sgrS, sgrT, [setA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 65857 | 78796 | 12940 | 40 [0] | [0] 40 | [araD]–[setA] | [araD],araA,araB,araC,yabI,thiQ,thiP,thiB,sroA,sgrR,sgrS,sgrT,[setA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 65856 | 0 (0.000) | 40 (0.660) +GA |
38/488 | 0.3 | 100% | coding (695/696 nt) | araD | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| ? | NC_000913 | 78797 = | 0 (0.000) | coding (1177/1179 nt) | setA | sugar exporter SetA | |||||
CGGGAATAAACGCCACGGACTCTTGCGGTGCAAGCGTAACCTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTACTGCCCGTAATATGCCTTCGCGCCATGCTTACGCAGATAGTGTTTATCCAGCAGCGTTTGCTGCATATCCGGTAACTGCGGCGCTAACTGACGGCAGAATATCCCCATATAAGCGACCTCTTCCAGCACGATGGCGTTATGCACCGCATCTTCGGCATTTTTGCCCCATGCAAACGGGCCGTGGGAATGGACCAGAACGCCGGGCATTTGCGCTGCATCGATACCCTGTTTTTCAAAGGTTTCTAC > NC_000913/65642‑66103 | cggGAATAAACGCCACGGACTCTTACGGTGCAAGCGTAAACTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGCGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcat > 1:186018‑M1/1‑215 (MQ=255) gcaccttttcggtgcaagcGTAACCTTCAACGGCCCGTGTT‑CCTCCCCCAGCCATAAGGAGCTTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaagggg < 1:461142‑M1/242‑53 (MQ=255) aCTCTTGCGGTGCAAGCGTAACCTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggat > 1:63384‑M1/1‑197 (MQ=255) ctTGCGGTGCAAGCGTACCCTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggatt < 1:187393‑M1/249‑56 (MQ=255) tGCGGTGCAAGCGTAACCTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggatta < 1:444393‑M1/248‑57 (MQ=255) ggTGCAAGCGTAACCTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGGGGTTTTATACAGTCATTgatgatgacgtggacggtagcggaaagcccggtcatttgaccgggcaaggggattaattcat > 1:121769‑M1/1‑189 (MQ=255) ggcAAGCGTACCCGCCAACGG‑CCGTGGTGCCGTCGCCGGCCGGAAGGAGCCTTCGGTCCCTTGCGGGTTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataa < 2:134807‑M1/250‑65 (MQ=255) gCAAGCGTAACCTGCACCGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaa < 1:262891‑M1/251‑66 (MQ=255) accctgCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggtt < 1:363728‑M1/249‑74 (MQ=255) ggcaccggcccGTGGT‑CCCTCACCAGCCAGAAGGAGACTTCTGTCCCGTGGGGGGTCTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttt < 2:388838‑M1/246‑78 (MQ=255) aaCGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGGCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgc < 1:28208‑M1/251‑81 (MQ=255) aagaAGGAGACTTCTCTCCTTTGCGGGTTGGCCCGCCAGTGCCGGGTTAAGCTAAAACCTGCCTGCGCCACGCTTAAAATCCATCAAAAAACCATGTGTGAGTATAGCCTGGTTTCGTTTGATTGGCGGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagccaggtcatttgaccgggcatgggtattaattcataaacgcaggttgttttgcttcataagcggcaaggtcgtcgtc < 2:284311‑M1/250‑105 (MQ=255) gcgtggtgtcCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgttctgcaaggtaatcccaata < 1:406384‑M1/247‑127 (MQ=255) ggggTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatact < 1:314562‑M1/251‑129 (MQ=255) ggggTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCCGCGCCACGCTGAAAATCCATCCAAAAACCCGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaagggggttaattcataaacgcaggttggtttgctttctaaacggcaatggagatgtcggtcttcaaggtaagcccaataat > 2:336477‑M1/1‑123 (MQ=255) gtCCCGCCAGTGTCGGGTTAAAATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTTGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtgggcgatagcggaaagcccggtcattttaccgggcaagggggttaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgcttcaagggaagcccaaaactgtcc > 2:385471‑M1/1‑118 (MQ=255) gCCAGTGTCGGGTTAAGATAAAAACTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGGGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtgggcgatagcggaaagcccggtcaattgaccgggcaaggggattaattcataaacgccggttgtttttcttcataagcggcaatggcgtcgacgtgctgccagggaagcccaaaactgtcccaaacg > 1:319357‑M1/1‑113 (MQ=255) gtCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatc > 1:481285‑M1/1‑107 (MQ=255) gggataagaTAATACATGCCTGCGCCACGCTGAGAATCCATCAAAAAACCAGGCTAGAGTATAGCCTGGTTTCGTTTGATTAGCTGTGGTATTATACAGTCATTgatgatgacgtggacgatagcggaacgcccggtcctttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcttaagtggacatggcgtcgtcgtactgcaagggaagcccaattcagtccagagcgttcatcacg > 2:268791‑M1/5‑104 (MQ=255) aaGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAACAAACCAGGCTTGAGTATAGCCTGATTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTaatgatgacgtggacgctagcggaaagcccggtcatttgaccgggcaaggggcttaattcataaacgcaggttgttttgcttcatcagcggccatggcgtcgtcttgctgcaaggtaagcccaatactctccagaccgttcatcctgccgtg > 2:36975‑M1/1‑99 (MQ=255) aaaaCCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcaattgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaaacccaataatgtccagaccgttcatactgccgtggcggg > 2:197314‑M1/1‑94 (MQ=255) aaaCCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcg > 1:292325‑M1/1‑93 (MQ=255) aaaCCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcg < 2:96760‑M1/251‑159 (MQ=255) gcctgcGACACGCTGAACACCCATCAAAAAACCAGGCTTGAGTATAGCATGGTTTCGTTGGATTGGCTGGGGTTTTATACGGGCATTgatgatgtcgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttgtgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaag < 2:320619‑M1/249‑163 (MQ=255) gcccagctgaaAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgagagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgat < 2:256560‑M1/246‑171 (MQ=255) gcCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGGTTCGGTTGATTGGCTGTGGTTTTATACAGTAATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgat < 2:204586‑M1/251‑171 (MQ=255) aaTCCATCAAAAAACCAGGCTTGAGTATAGGCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgat < 2:38156‑M1/251‑182 (MQ=255) aaaaaaCCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggtgttc > 2:357523‑M1/1‑62 (MQ=255) aaaaaCCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTTGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttct < 2:57379‑M1/251‑191 (MQ=255) aaCCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaagcatcgatggtaaagcgataggttttctctc > 1:244084‑M1/1‑58 (MQ=255) ccAGGCTTGATGATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctccc < 2:63384‑M1/251‑196 (MQ=255) gCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctcccgctt < 1:101223‑M1/251‑200 (MQ=255) aGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctcccgctttcacc > 1:425383‑M1/1‑47 (MQ=255) cgtttggttgtcggttgatttatacagtcattgatgatgacgttgacgatagcggaatgcccggtcagttgcacgggcaaggggattaattcatacacgcaggttgtgttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcgtaaggcatcgatggtaaagctatagattttctctcccgctttcacctcttgcgcttccaga < 2:129395‑M1/233‑220 (MQ=255) cggtttattggctGGGGTTTTATACCGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgccggtggttttgcttcataagcggcaagggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcagcatgcagtggcggcggaaggcatcgatgggaaagcgataggttttcgcgcccgctttcacctctggcgcttccag < 2:371091‑M1/244‑219 (MQ=255) tGATTGGCTGTGGTTTTATACAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctcccgctttcacctcttgcgcttccagatcc < 1:147319‑M1/250‑223 (MQ=255) ataCAGTCATTgatgatgacgtggccgctagcggaaagcacggtcatttgacagggcaaggggattaattcataaacgcaggatgttttgcttcataagcggcacaggcgtcgtcgtgctgcacggtaagcccaatcctgtccagaccgttcatcatgcagtggcggcggaaggcctcgattgtcaagcgataggttttatctcccgcttacacctcttgcgcttacagagccacttcgcaatggatcccc > 2:171712‑M1/1‑11 (MQ=255) ataCAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgtttttcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctcccgctttcacctcttgcgcttccagatccacgtcgaaatggatcccc < 1:251921‑M1/251‑241 (MQ=255) aCAGTCATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctcccgctttcacctcttgcgcttccagatccacggcgaaatggatccccgg > 1:219457‑M1/1‑9 (MQ=255) cATTgatgatgacgtggacgatagcggaaagcccggtcatttgaccgggcaaggggattaattcataaacgcaggttgttttgcttcataagcggcaatggcgtcgtcgtgctgcaaggtaagcccaatactgtccagaccgttcatcatgcagtggcggcggaaggcatcgatggtaaagcgataggttttctctcccgctttcacctcttgcgcttccagatccacgtcgaaatggatccccggattag < 1:181153‑M1/251‑248 (MQ=255) | CGGGAATAAACGCCACGGACTCTTGCGGTGCAAGCGTAACCTGCAACGGCCCGTTGT‑CCGTCGCCAGCCAGAAGGAGACTTCTGTCCCTTGCGGGGTGTCCCGCCAGTGTCGGGTTAAGATAAAACCTGCCTGCGCCACGCTGAAAATCCATCAAAAAACCAGGCTTGAGTATAGCCTGGTTTCGTTTGATTGGCTGTGGTTTTATACAGTCATTACTGCCCGTAATATGCCTTCGCGCCATGCTTACGCAGATAGTGTTTATCCAGCAGCGTTTGCTGCATATCCGGTAACTGCGGCGCTAACTGACGGCAGAATATCCCCATATAAGCGACCTCTTCCAGCACGATGGCGTTATGCACCGCATCTTCGGCATTTTTGCCCCATGCAAACGGGCCGTGGGAATGGACCAGAACGCCGGGCATTTGCGCTGCATCGATACCCTGTTTTTCAAAGGTTTCTAC > NC_000913/65642‑66103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |