| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,499,401 | Δ12,725 bp | yhfL–[yhfZ] | yhfL, frlA, frlB, frlC, frlD, frlR, yhfS, yhfT, yhfU, php, yhfW, yhfX, yhfY, [yhfZ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3499401 | 3512125 | 12725 | 42 [0] | [0] 42 | yhfL–[yhfZ] | yhfL,frlA,frlB,frlC,frlD,frlR,yhfS,yhfT,yhfU,php,yhfW,yhfX,yhfY,[yhfZ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3499400 | 0 (0.000) | 42 (0.680) | 36/492 | 0.3 | 100% | intergenic (+199/‑48) | cysG/yhfL | siroheme synthase/DUF4223 domain‑containing lipoprotein YhfL |
| ? | NC_000913 | 3512126 = | 0 (0.000) | coding (219/906 nt) | yhfZ | putative DNA‑binding transcriptional regulator YhfZ | |||||
GGCATAAGCCTTTTTGCGTGAGATAACTTTCCGCCGCTAGTCGCGAAACCACCGCCATGTCATACACGCCATTAAGCAGACACTCCACGCGAATATCCGCGCCACGCATGTGCGCATAGTAAAAAGGAATGCCATCAAACTGGGCTTTCAATCCGCTCGCCAGGCCTTCGTACAAACGGGTATAGGGCAAGGGCATTGCACATACCACGTTGTTGATATCCACATGAGTCAGCAATGCTTTGTTATCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAAT > NC_000913/3511876‑3512367 | ggtcgggttgttggcctgcgcgataaactgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcc > 1:413872‑M2/251‑251 (MQ=255) gggttgttggcctgcgcgataaactgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGa < 1:466151‑M2/5‑1 (MQ=255) ataaactgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacctacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTgc > 1:42300‑M2/229‑251 (MQ=255) tgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCAc > 1:395818‑M2/223‑251 (MQ=255) actggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttcacgagcagtcttcgtatattcCTCGACCAGATCACTGCCATTGCGCCCACGGc > 2:458342‑M2/220‑251 (MQ=255) tggttctccaaccattaatttaacccgggccagagaattctggcattcttaatgactctttttatatattcatcaaataaaacatagcccctgaataaatattagctgctaaggggttatattcaccgttccagcgacttacaaaattaagtccgtcgcgcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAGCTGCCATGGCGCCCTCGgct < 2:409352‑M2/33‑2 (MQ=255) gttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatatccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTc > 1:159875‑M2/216‑251 (MQ=255) attaatttcacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgataatggtttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCACTCCGTATCg > 2:325540‑M2/205‑251 (MQ=255) gccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCa < 1:371340‑M2/62‑1 (MQ=255) ggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAAc < 1:478890‑M2/73‑1 (MQ=255) gccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGCCTCCAGCGTTTTCAAcgcg > 2:161943‑M2/176‑251 (MQ=255) ctttttatatattcagcacataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGcc > 2:410828‑M2/161‑250 (MQ=255) atattcagcaaataaaacgtagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGAGTCAGGCCAAcggc > 2:398968‑M2/153‑247 (MQ=255) gccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTc > 1:326447‑M2/132‑251 (MQ=255) ccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCtct > 1:339942‑M2/131‑250 (MQ=255) ttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCt > 1:112777‑M2/127‑250 (MQ=255) atctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAAt < 1:473243‑M2/136‑1 (MQ=255) atctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATc > 1:124388‑M2/115‑251 (MQ=255) tctgctaatgggttatatgcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCg > 2:410289‑M2/114‑251 (MQ=255) gttatattcaccgttacatcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCACTCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGTCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACt > 2:413752‑M2/103‑251 (MQ=255) tcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCttgactc > 2:121670‑M2/96‑152 (MQ=255) tcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCttgactc < 1:121670‑M2/60‑4 (MQ=255) acagctacttacaaaattaaggcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCGCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAAt < 2:12572‑M2/164‑1 (MQ=255) taagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTc < 1:466190‑M2/133‑1 (MQ=255) taagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGcgtcgt < 1:366274‑M2/180‑1 (MQ=255) taagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCAAGCTCATCTATGGTTTTc > 2:466190‑M2/71‑203 (MQ=255) cgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATgacgac < 1:222239‑M2/189‑1 (MQ=255) cgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGacgacg > 1:397157‑M2/62‑251 (MQ=255) ctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGcc > 1:232753‑M2/60‑251 (MQ=255) cactgacaccaattagatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATgac < 1:394791‑M2/186‑1 (MQ=255) cactgacaccaattagatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGATTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATgac > 2:394791‑M2/58‑243 (MQ=255) actccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattaCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACTCCTTCtttt > 2:73390‑M2/53‑251 (MQ=255) gccaattaaatcttcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACTGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACGTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTGCtttttt < 2:159875‑M2/201‑1 (MQ=255) atattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACACAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGt > 2:411675‑M2/42‑251 (MQ=255) attcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTc < 1:288564‑M2/212‑1 (MQ=255) tgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCTTCAGGCCAACGGATGAAc < 2:406155‑M2/101‑1 (MQ=255) tgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAAc > 1:406155‑M2/35‑135 (MQ=255) tgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGc > 1:167612‑M2/35‑251 (MQ=255) tcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGCCGCata > 2:49539‑M2/31‑250 (MQ=255) gtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAAt > 1:38833‑M2/15‑251 (MQ=255) tcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTg < 1:211655‑M2/239‑1 (MQ=255) gtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTACATTGAat > 2:297745‑M2/9‑250 (MQ=255) | GGCATAAGCCTTTTTGCGTGAGATAACTTTCCGCCGCTAGTCGCGAAACCACCGCCATGTCATACACGCCATTAAGCAGACACTCCACGCGAATATCCGCGCCACGCATGTGCGCATAGTAAAAAGGAATGCCATCAAACTGGGCTTTCAATCCGCTCGCCAGGCCTTCGTACAAACGGGTATAGGGCAAGGGCATTGCACATACCACGTTGTTGATATCCACATGAGTCAGCAATGCTTTGTTATCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAAT > NC_000913/3511876‑3512367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |