| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,196,867 | Δ27,041 bp | [ymfD]–ymgJ | 37 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, ymfN, ymfR, beeE, ymfQ, ycfK, tfaP, tfaE, pinE, mcrA, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ymgD, ymgG, ymgI, ymgJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196867 | 1223907 | 27041 | 27 [0] | [1] 28 | [ymfD]–ymgJ | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ymgD,ymgG,ymgI,ymgJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1196866 | 0 (0.000) | 27 (0.440) | 26/490 | 0.8 | 100% | intergenic (+84/+1) | C0293/ymfD | small regulatory RNA C0293/putative SAM‑dependent methyltransferase YmfD |
| ? | NC_000913 | 1223908 = | 0 (0.000) | intergenic (+459/+371) | ymgJ/minE | uncharacterized protein YmgJ/Z‑ring positioning protein MinE | |||||
GAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAAG > NC_000913/1223674‑1224146 | cactgttattaggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACt < 1:100430‑M2/17‑1 (MQ=255) tcttaggacaattatgaattaccactcattacacccgctaaaatattgttaaattgacggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtccatgcggaatgtaacaaaggtcgcgagcgcggccccttcacatacatccttagtactgaaactggttaacctcggggattcttgtcgtaCCATCAACGATTCAACTGCGCtt > 2:86546‑M2/229‑251 (MQ=255) tattaggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCtt > 1:194139‑M2/229‑251 (MQ=255) attatgaattaccactccttacacacgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatatttagtactgagactgtttaacatagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGtt > 2:476041‑M2/219‑251 (MQ=255) gaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcccccgggacgcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGt < 2:98377‑M2/38‑1 (MQ=255) ccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATg < 2:300237‑M2/48‑1 (MQ=255) cctctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTGCGGCGCAGTTTTCGTTTACAGGATGTTGAAAggg < 2:60263‑M2/57‑1 (MQ=255) aaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAAtt > 1:229559‑M2/189‑251 (MQ=255) aattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCaaa > 1:418131‑M2/178‑250 (MQ=255) tgccggttttgtatcaactactcacccgggnctcgccaggggacagccaacatgcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCaaaaaa < 2:237578‑M2/76‑1 (MQ=255) ggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGccc < 1:108365‑M2/81‑1 (MQ=255) tatcaacaactcacccgggactcgccaggggacagcaaacagccattggatgcactcaccttagcgttcaggtacatgcggtatgtaaaaaaggccgcgagcgcggccacctcacataaatctatagtactgagactgttaaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAagggacaattctggggcacacaaacaccgcccgtt > 1:218898‑M2/164‑234 (MQ=255) ctactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGCTGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTAcggc‑g > 2:13955‑M2/158‑251 (MQ=255) ctcgccaggggacagcccacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcccatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACTATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGACCgccatgtacggc‑ggggtgacacccccc > 2:340311‑M2/144‑239 (MQ=255) cgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTAt < 1:13955‑M2/110‑1 (MQ=255) ccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGccagttacggcggggaaacccctcctattgggggaaaa > 1:360899‑M2/129‑230 (MQ=255) tgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAAt < 1:443663‑M2/133‑1 (MQ=255) gggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggcccctgcacatacaactttagtactgagactgtttaacctagggaattattgtcttaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACTGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTg < 2:388036‑M2/135‑1 (MQ=255) caatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGCAAACTCCTCccttcggagaacaacgaaaaaacaaaatgggggg > 1:221292‑M2/112‑235 (MQ=255) tcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAg < 1:425102‑M2/154‑1 (MQ=255) gtaaaaaaggccgcgagcgcggcaccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACGGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAAt < 2:92435‑M2/172‑1 (MQ=255) ccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTAttt < 2:360899‑M2/182‑1 (MQ=255) ggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTATTTACTCAACCAg < 1:440752‑M2/192‑1 (MQ=255) catacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGGAACCCCATCCTATGGGAGAACAAAGAAAAATGAAATTGCGGGGATTTCAACTCCCCATATAT‑CCATACTAAAAATAAGGGAATTTTCTCAAACAGGcaaaaaaa > 1:73661‑M2/50‑248 (MQ=255) catacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTATTTACGCAACCAGGCATAAACAt < 1:170863‑M2/202‑1 (MQ=255) acctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAAACTCACCCCATTGGGGAACAAAGAAAAAAGAAAATTCGGGGTTATTTTTCCCCAATATATACCA‑ACTAACAATAAGGTTATTTTCTCAAACAAGCAATAACATTTTTTTTTTTTCGGGGGGACAGccctt > 1:102705/21‑247 (MQ=255) attatttgcgtaCCATCAACGATTAAATTTCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAGTTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTATTTACTCAACCTGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAAg < 2:255455‑M2/239‑1 (MQ=255) attattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTATTTACTCaa < 1:405087‑M2/188‑1 (MQ=255) | GAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGC‑GGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATAT‑CCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAAG > NC_000913/1223674‑1224146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |