| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 98.2% | 196.4 / ‑4.5 | 54 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (28/25); total (29/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
TCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGG > NC_000913/3560206‑3560686 | tcttctTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑c‑c > 2:75905/1‑251 (MQ=255) ttttttCCCATCAGCGTTTTAGCAACGTTAAAATTGTTGGTGAAAATGCGAAATTTGTTGTGATGGAGCAGGGCTTGCGCTCCCG‑CTTCCGGCGTGGTGCC‑GATAC‑CGAAAAACAGCGTGGGGCCATTGGG‑GTTTTGC‑TCCGCCCCTTTGCGGGCGATGCGCTCTTTTTCTTCGTTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑cgca < 1:246323/248‑4 (MQ=255) tcttTTCCCATCAGCGTGTTGGCATCGTTGAGATTGTGGGGGACAGTGCGCAAATTGCTGGGATTGAGCAGTGCGGGCGTTCCCG‑CTCCCGGGGGGGGGCC‑GATAT‑GGAAAAACGGCGTCGAGCCTTTGGG‑GTTTTGC‑CCGGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCGGCACCGCCATGATGG‑cg < 1:148365/248‑2 (MQ=255) ttACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATc > 1:420120/1‑251 (MQ=255) acccaaatttgtgttgcaaaCGTTGAGATTGTTGGTGACAATGCATAAATTGTTTAGATTGAGCAGGGCGTGCGCTACC‑‑CTTTCGGGGGTGTGCCATTTAT‑CTAAAAACAGCGCCG‑GCCCTTGGGTGGTTTGT‑CCCGCCACTTTGCGGGCGATGCGCCCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTACCCGAACTGGAATGCAGCGCCGCACCGCCATGATGG‑CGCAGGATc < 2:92545/232‑1 (MQ=255) cccATCAACGTGTGAGCAATGTTAAGATTTTTGTTCAAAATGCGCAATTTGCTGGAATTGAGCGGTGCGTGCCCACCCG‑CTCCCGGCGTGGTGCT‑GTTAC‑CAATAACCGGCTCCGACCCATGGGG‑TTTTTGC‑TCCGCCATTTTGCGGGCGATGCGCTCTTTTTCTTCGTTCTGGTTGGCCTTGCGATCGTGCCACGGCTTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAg < 1:89841/250‑1 (MQ=255) cAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGAGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGAAAAACAGCGACGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGAGGGCGATGCGCTATTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGACGGCAGAGCCGCACCGCCATGATGG‑CGCAGGATAAGGgttt > 1:57183/1‑251 (MQ=255) tgtTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTcc > 1:235528/1‑251 (MQ=255) taacaaacgttggttttgttgtggACAATGCGCAATTTGCTTTGATGGAGCGTTGTGTGCG‑TCCCGGCTTCCGGCGTGTTCCA‑GATAT‑CAATAAACGGCGTCAGGCCTTTGGG‑AATTTCC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCTCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCg < 1:352594/227‑1 (MQ=255) gCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGcc > 1:65180/1‑249 (MQ=255) aaggTTGAGATTGTGGGTGAAAATGCGAAATTTGGGGTGATTGAGCAGTGGGGGGCCTCCCG‑CTTCGGGCGGGGTGCC‑GATTT‑CGAAAAACAGCGCGGAGCCTTTGGG‑GATTTGC‑CCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCt < 1:20260/248‑1 (MQ=255) aaCGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCTCTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGAG‑CAGGATCCGGGTTTGCTCCGCCAgac > 2:482165/1‑249 (MQ=255) aaCGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCt > 1:212909/1‑251 (MQ=255) ggTTGAGATTTTTGGTGAAAATGCGAAATTTGTTGTGTTTGAGCAGTGCGGGCCCTCCCC‑TTTCCGGGGTGGTGCC‑GATAT‑CGATAAACAGCGTGGACCCTTTGGG‑GTTTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCa < 1:120302/250‑1 (MQ=255) ttgttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc > 1:51393/1‑251 (MQ=255) gACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGa > 1:159503/1‑250 (MQ=255) gACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGa > 1:417455/1‑250 (MQ=255) gaaatttgtggtgATTGGGCAGGGCGTGCGGTACCG‑CTTCGGGCGGGGTGCC‑GATAC‑CGATAAAAAGCGTCGAGCAATTGGG‑GATTTGC‑TCCGCCATTTTGCGGGCGATGCTCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGAGCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc < 1:40656/241‑1 (MQ=255) aaaTTGCTGTGATTGAGCAGTGCGTGCGCTATCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTGATGG‑CGCAGGATCAGGTTTTGCTCCGCCCGCTCCTTGAGGTCGCGGCGAATAGTCTGCgg > 2:128025/1‑251 (MQ=255) tgtgATGGAGCAGGGGGTGCGCTCCCT‑TTTCCGGGGGGGGGCC‑GATTT‑CGATAACCAGCGTCG‑GCCAATGGG‑GGTTTGCCTCCGCCACTTTGCGGGGGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTG‑TTAACCGAACTGGAGGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCTCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTg < 1:376145/248‑1 (MQ=255) attgggcgttggcggcgtcaccctttCCGGGGTGGTGCC‑AATAC‑CGAAAAACGCCGTCGAGCCATTGGG‑GTTTTTC‑TCCGCCACTTTGCGGGCGATGCCCTCTTTTTCTTCGGCCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgag < 1:226803/226‑1 (MQ=255) gcgcatggcggcggctcccG‑CTTCCGGCGTGGGGTC‑GA‑ATGCAATAATCAGCGTCTAGCCTTTGGG‑GATTTGC‑CCCGCCCTTTTGGTGGGGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTT‑TTAACCGAACTGGAAGGCAGCGCTGCCCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGaaa < 1:457722/233‑1 (MQ=255) cagttctggcgcTCCCG‑CTTCCGGCGGGGGCCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑CCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGct < 1:330353/243‑1 (MQ=255) cgtgcgCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCAGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGCAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAcc > 1:443935/1‑251 (MQ=255) tACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt > 1:222099/1‑251 (MQ=255) acccgctgctgggtgggtccc‑GATAT‑TGATAACCAGCGTCGAGCCATGGGG‑GATTTGC‑TCCCCCACTTTGCGGGCGAGGCGCTTTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCTTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 1:60412/232‑1 (MQ=255) tCCGGCGGGGTGCC‑GATAT‑CGATAAACAGCGTCGGGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa < 1:75905/249‑1 (MQ=255) ggCGTGGTGCC‑GATAT‑AGATAAACAGCGTCGAGCCATTGGG‑AATTTGC‑TCCACCACTTTGCGGGCGACGCGATCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAAGTGGAAGGCAGCGCCGCACCGCCCTGATGG‑CGCAGGAACAGGTTTTGCTCCGGCAGCTCATTTAGGTCGAGGCGAATAGACTGCGGGCTGACGTCGAAATGCTCTACCAGCTCTTCGGTAATGAc > 2:286730/1‑251 (MQ=255) aacGATAAACAGCGTAGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCCGGTTTTGCTCCGCCACCGCATTGCGGTCACTGCGAATAGTCCGCGGGCTGACGGACAACGGATCTACCAGCACTTCGGCACTGCCATACACCTGCTGtt > 2:32506/3‑251 (MQ=255) aCAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGt > 1:57834/1‑251 (MQ=255) gggagcaggtgtgtttttcttCCGCCACTTGGGGGGCGAGGCGTTTTTTTTCTTCGGTGTGGGTGCCCTGGCGACGGTGCCACGGGGTG‑TTAACCGACCTGGAGGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGGTGAACCAGTTCGata < 2:317986/231‑1 (MQ=255) aTTGGG‑GATTTGC‑TCCGCGACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGt > 2:403101/1‑251 (MQ=255) ggg‑gGTTTGCCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTGGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtg < 1:110635/251‑1 (MQ=255) ttGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGt < 1:380951/250‑1 (MQ=255) cccccACTTTGCGGGCGTGGCGCTTTTTTTCTTGGGTCGGGGGGGCCTTGCGACGGTGCCACGGCGTG‑TTACCCGAACGGGAGGCCAGCGCCGCCCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGTGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtt < 2:417455/248‑1 (MQ=255) cTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc > 1:29697/1‑251 (MQ=255) tttGCGGGCGTTGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGGGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc < 1:54907/250‑1 (MQ=255) tGCGGGCGATGCGCTCTTTTTCTTCGGGCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGACCCGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAt < 1:422752/250‑1 (MQ=255) gggCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtat > 1:217023/1‑251 (MQ=255) gggCGATGCGATCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAATGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtat > 1:334162/1‑251 (MQ=255) cgcTCTTTTTATTCGGTCTGGTGGGCGTTGGGAGTGTGCCCCGG‑GTGGTTAACCGAACTGGGGGGCAGCCCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGTCATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCt < 2:193186/251‑1 (MQ=255) ggTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGATTTAttttcgt > 2:159592/1‑251 (MQ=255) ggCCTTGCGCTGGGGCCAGGGCGTG‑TCAGTCGCACTGGAAGGCTTCGCCGCCCGGCCATGATGG‑CGCAGGTTCAGTTTTTGCTCCGCCAGCGCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATTATCCCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATGTTCGTTTTAGCGCa < 2:153739/251‑1 (MQ=255) ccTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAtt > 1:294732/1‑251 (MQ=255) cGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATc < 1:144120/251‑1 (MQ=255) ggCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGtt > 1:76628/1‑184 (MQ=255) gttaccggaccTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCAt < 1:2193/240‑1 (MQ=255) ttAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATc < 1:368178/250‑1 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtat > 1:465200/1‑191 (MQ=255) cTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGCCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAACTCCCTGGATTTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAccc > 2:125539/1‑250 (MQ=255) ggcgcgcccgcACCGCCATGATGG‑CGCAGGATCTGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCGCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTGCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACACAAGCCATCGCTAAACCCACGGCTa < 2:39590/244‑1 (MQ=255) gCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata > 2:345157/1‑180 (MQ=255) gCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata < 1:345157/180‑1 (MQ=255) gCAGCGCCGAACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGACGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATCACCCTGCTGTTTAACCAGCTCGATAATACCGGTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTACGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTa > 2:280061/1‑250 (MQ=255) aGCGCCGCAACGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATCGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTCTTTTCTTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAcc > 2:105829/1‑251 (MQ=255) gccgcACCGCCATGCTGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCgg > 1:394085/1‑251 (MQ=255) cACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGa > 1:44779/1‑181 (MQ=255) | TCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCG‑CTTCCGGCGTGGTGCC‑GATAT‑CGATAAACAGCGTCGAGCCATTGGG‑GATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTG‑TTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGG > NC_000913/3560206‑3560686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |