Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4400CA35.3% 51.4 / 18.7 51intergenic (‑184/‑23)ttdR/ttdADNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (11/22);  new base A (6/12);  total (17/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGG  >  NC_000913/3206194‑3206686
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                  
cccGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑Caaa                                                                                                                                                                                                                                                                 <  2:131165/250‑1 (MQ=255)
   gCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACa                                                                                                                                                                                                                                                             <  1:195242/251‑1 (MQ=255)
     tgtgAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTCA‑GAACAAAtcaa                                                                                                                                                                                                                                                             >  2:576104/1‑247 (MQ=255)
      gtgAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATGTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATAGAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACaa                                                                                                                                                                                                                                                            <  1:484667/249‑1 (MQ=255)
             aTTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑Ag                                                                                                                                                                                                                                                 <  2:250789/251‑1 (MQ=255)
               ttcttcCAGTACCTGCAAGGCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTGTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAC‑CTGG‑AGt                                                                                                                                                                                                                                                <  2:396832/250‑1 (MQ=255)
                        tACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGA‑TTTTTTTC‑TA‑CAAATACaaaaaattgaagtgccattatg                                                                                                                                                                                                                                        >  1:225833/1‑234 (MQ=255)
                                  gctctggagaaaGGCCAGCTATGCAGCATCTGTAATTAGCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAAGTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGTGGTGAA‑TTGTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCTAAAG‑ta                                                                                                                                                                                                                          <  2:194427/242‑1 (MQ=255)
                                       ggCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTCTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑taataa                                                                                                                                                                                                                      <  1:424880/250‑1 (MQ=255)
                                                   gCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTg                                                                                                                                                                                                        <  2:484944/251‑1 (MQ=255)
                                                        tCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑Ta                                                                                                                                                                                                   <  1:514354/250‑1 (MQ=255)
                                                           gCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGtt                                                                                                                                                                                               <  1:329542/251‑1 (MQ=255)
                                                                              gTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGCTAAc                                                                                                                                                                         <  1:766347/251‑1 (MQ=255)
                                                                                      aaGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGCGGA‑TTTTTTTA‑AC‑CAAATACAAAAA‑AAAG‑GGTTGCCCTGT‑TGAGCGGAAG‑AAATAA‑ACCAAAAGCAGTGAA‑AAAGGTGG‑AA‑G‑AGATTGttggtacatttaccgc                                                                                                                                                                 >  2:209512/1‑236 (MQ=255)
                                                                                         cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCC‑‑GA‑AAAATAAAAAAAACTG‑‑AGGTGCCCTGA‑TGGGCGAAAA‑GAATAA‑ACAACAAGCAGGGGA‑TAAAATGA‑AA‑G‑AGAATGTTGCTAAC‑TTTaacccccc                                                                                                                                                             >  1:756694/1‑244 (MQ=255)
                                                                                                       cAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTCA‑GA‑AAAATACAAAAA‑CTGGTAGTGTCCA‑GA‑TGAGAAAAAG‑TAATAA‑GAAAAAAGCAAGGAA‑AAAATTGA‑CA‑C‑AGAGTGTAGCTCAC‑TTTA‑CATCCATGAGTTCTACCCgc                                                                                                                                               >  1:152584/1‑249 (MQ=255)
                                                                                                           aCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTTTTAACTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTATTTTGGGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCAGGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTGGA‑CA‑G‑AGATTGTCGCTACC‑TTTA‑CCGCCATGATTTCTACCCGAATGcc                                                                                                                                          <  1:251649/251‑1 (MQ=255)
                                                                                                                    ttCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCTA‑GA‑AAAAAACAAAAA‑ATGG‑AGGTGCCCTGA‑AGAGCGGAAA‑AAATAAAGAAAAAGG‑AGTGGA‑TAAGTTGAACA‑‑‑AGATTGTCGCTAAA‑TTTT‑ACGACATGATTTTTACCCGAAAACCTGATGACgg                                                                                                                                 >  1:89423/1‑250 (MQ=255)
                                                                                                                            tctGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGA‑TTTTTTCC‑GA‑AAAAAACAAAAA‑ATGG‑AGGTGCCATGA‑TGAGGGGAAG‑GAAAAA‑AAAAAAGGCCGGGGA‑TAAATTGG‑CA‑G‑AGAATGTCGCTTAA‑TTTA‑CCCCCATGATTTTTTCCCGAATGCCTGATGTCGtggtgggg                                                                                                                          >  1:444874/1‑248 (MQ=255)
                                                                                                                             tgggccaaaTATTCATTCTTATTTTCG‑GTTAGATTCAAACACTGTTATTTACAAA‑TTCACGGTGGCAAAAAATATAAAACCACAATTTTAGTGGTGGTTTGTGCGGGGGAA‑TTTTTCAA‑AA‑CAAATAAAAAAG‑CTGG‑GTTTGCAATTA‑GGCTCAAAAT‑TAATAA‑GCAACAGCCAGGAAA‑TAAGTGTA‑AA‑G‑GGATTGTCGAATAT‑TAGA‑CCGCCATGATTTCTACCCGAATGCCTGATGACTTGGTGGAt                                                                                                                          <  2:172838/242‑1 (MQ=255)
                                                                                                                             ctGGCGCAATATTCTTTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTAGCGGTGAA‑TTTTCCCA‑GA‑AAAATAAAAAAA‑CTGG‑AGTTGCCATGA‑TGAGAGAAAG‑TAATAA‑GAAAAAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCCCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGAt                                                                                                                          <  1:23484/249‑1 (MQ=255)
                                                                                                                             ctGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTCA‑AA‑CAAAAACAAAAA‑ATGG‑AGGTGGCATTA‑TTAGCGAAAG‑AAATAA‑AAAACAGGCAGGGAA‑TAAAATGA‑CA‑G‑AGATTGTCGCTAAA‑TTTA‑TCGCCATGGTTTTTACCCCCATGCCTGATGACgtggggggta                                                                                                                         >  1:384642/1‑244 (MQ=255)
                                                                                                                               gtcaaaaTATTCATTCTTTTTTTGGCGTG‑TATCCACGAACTTTTATTTCCATA‑TTCTGGGGGGAAAAAAATATAAAACCACATTTTTAGGGGTAGTTTGGGGCGGTGAT‑TTTTTCAA‑GA‑AAAAAACAAAAC‑CGGG‑AGTGGCATTGA‑GGAGCGAAAG‑TAATAA‑GCAACAGGCAGTAAA‑TAAGTTGA‑AA‑G‑GGATTGTGGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAAc                                                                                                                      <  2:621699/246‑1 (MQ=255)
                                                                                                                               ggCGCAATATTCATTCTTATTTGCGCGTT‑GATTCACGAACTTTTAATTACATA‑TTCACGGTGGCAAAAAATAAAAACCCCCATTTTTAGTGGTAGTTTGTGGCGGTAAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCTGGA‑TGAGCGAAGT‑TAATAA‑GCAACAGGCAGTAAA‑TAATTTGA‑CA‑G‑AGATTGTCTCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAAc                                                                                                                      <  1:101824/251‑1 (MQ=255)
                                                                                                                                              tttATTGTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATAAAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCAAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTGGA‑CA‑G‑AGTTTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAg                                                                                                        <  1:690907/249‑1 (MQ=255)
                                                                                                                                              cTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGA‑TTTTTTCA‑GA‑AAAAAACAAAAA‑CAGG‑AGGTGCCATGA‑TGAGCGAAAG‑GAATAA‑AAAAAAAGCAGGGAA‑TAAGATGA‑CA‑G‑AGATTTTTGCTAAA‑TTTA‑CCGCCCTGCTTTTTTCCCGAAAGCCTGATGACGGGGGGGATAAACTAAAAAAGCTaaa                                                                                                         >  1:642496/1‑249 (MQ=255)
                                                                                                                                                      cgcgTT‑GTTTCCCGAACTTTAAATTACATAATTC‑CGGTGGAAAAAAAAATAAAAACACTTTTTTAGTGGTTGTTGGTGGGGGGGAA‑TTTTACCA‑AA‑AAAAAAAAAAAA‑CTGG‑AGTTGCCCGGA‑GGGGCGAAAG‑TAAAAA‑GCAAGCGGTAGTGAA‑AAAGTTG‑‑CACG‑GGATTTTCCCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGCCGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaa                                                                                               <  1:641302/251‑1 (MQ=255)
                                                                                                                                                       gcgTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAACAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑AA‑CAAAAACAAAAA‑CTTG‑AGTTGCCCTGA‑TGAGCGAAAA‑TAATAA‑ACAACAGGCAGGGCA‑TAAATTTA‑CA‑G‑AGATTGGCGCTAAA‑ATTA‑CCGCCCTGAGTTCTACCCCGATGCCTGACGACGTGGGGGGTAAAATCAAACaaacaaaagagaccgca                                                                                               >  1:163383/1‑234 (MQ=255)
                                                                                                                                                         gTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTCC‑GA‑CAAATAAAAAAA‑ATGG‑GGGTGCCCTGA‑TGAGCGAAAG‑TAATAA‑ACAACAAGCAGTGGA‑AAAATTGA‑CA‑G‑AGATTGTTGCTAAA‑TTTT‑CCGCCCAGATTTCTACCCCAAAGCCTGATGACGGGGTGGGTAAACTAAAAAAACTAAAAGATGCCggaa                                                                                              >  1:317582/1‑246 (MQ=255)
                                                                                                                                                             gATTCACAAATTGTTAATTCCATA‑TTCACGGTGGAAAAAAATATAAAACCCCATTTTTAGGGGTAGTTTGGGGCGGTAAA‑TTTTTCAA‑GA‑CAAATAAAAAAA‑CTGG‑AGTGGCCATGA‑GGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAATTTGA‑CA‑G‑AGATTGTCGTTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtcg                                                                                         <  1:416015/251‑1 (MQ=255)
                                                                                                                                                                tcacaaatggTTAATTAAATA‑TTCACGGTGGAAAAAAATAAAAACCCCCATTTTTAGGGGTATTTGGGGGCGGTGAA‑TTTTTCCA‑GA‑AAAATAAAAAAA‑CGGG‑AGTTGCCATGA‑TGAGCAAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑AA‑G‑AGTTTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACgtcgtc                                                                                       <  1:576104/241‑1 (MQ=255)
                                                                                                                                                                 cACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGCTAAC‑tt                                                                                                                                                                      <  1:162658/171‑1 (MQ=255)
                                                                                                                                                                         gTTAATTAAATA‑TTCACGGTGGCAAAAAATAAAAACCCACATTTTTAGTGGTAGTTTGGGGGGGGGAA‑TTTTTCCA‑GA‑AAAATAAAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GAAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGTTACT‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCg                                                                                                 <  1:452581/231‑1 (MQ=255)
                                                                                                                                                                           taatatatta‑tTCACGGTGAAAAAAAATAAAAAACCTAATTTTCATTGGTATTTTTTGTGTTTGAA‑TTTTTCAA‑AA‑AAAATACAAAAA‑TGGG‑TGTTGCAATAA‑TGTGAAAAAT‑TAATAA‑CAAACAGCAAGTAAA‑TATGTTG‑‑CA‑GGAGATTTTCCCTA‑C‑TTTAACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGATAAAGGATGCCGAAACGTCGTCGATGGGGaaaa                                                                            <  2:81172/242‑1 (MQ=255)
                                                                                                                                                                            aaTTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAGGTTGA‑CA‑G‑AGATTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAAtt                                                                          <  1:209512/251‑1 (MQ=255)
                                                                                                                                                                                     atcccgggTGGCAAAAAATAAAAAACCACATTTTTAGTGGGAGTTTGGGGCGGGAAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CGGG‑AGTGGCCATGA‑GGAGCGAAAG‑TAAAAA‑GCAACAGGAAGTGAA‑TAAGTTGA‑CA‑G‑AGATGGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCa                                                                  <  1:341362/245‑1 (MQ=255)
                                                                                                                                                                                       ttttgttgtcAAAAAATAAAAAACAACATTTTTAGTGTTAGGTTGTGGGGGAGTA‑TTTACCCT‑AA‑CAAAAAGAAGAA‑CAGG‑ATTTGCCATGA‑TGAGC‑AAAGATAATAT‑GTACCGGCCATTAAA‑TAGGTGGA‑AA‑G‑AGATGGTGGTTAGT‑TGTA‑CCGCCATGATTTCTACCCGAATGCCTGATGGCGTGGTGGATAAGCTAAAACTGCTTAGGGCTGCAGATACGGCGTCGATGGGGAAAATTAACTACCAt                                                                 <  2:71920/241‑1 (MQ=255)
                                                                                                                                                                                       tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑ATTTTTCA‑AA‑CAAATACAAAAA‑ATGG‑AGTTGCCCTGA‑TGGTCGGAAG‑TAATAA‑AAAAAAAGCAGTGAA‑AAAGTTGT‑CA‑G‑AAATTGTTGCTCAC‑TTTA‑ACGCCATGTTTTTTTCCCGAAATCCTGATGACGTGGTGGGAAAACTAAAAAAGCTAAAAGAAGCCGAAACGCCGCCGCTGGGGGAAAATATCTaacac                                                                 >  2:538844/1‑246 (MQ=255)
                                                                                                                                                                                           ggTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTGGGGGCGGTGAA‑TTTTTCCA‑GA‑CAAATAAAAAAA‑CGGG‑AGTTGCCATGA‑TGGGCGAAAT‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑AA‑G‑GGATTGTCGCTAAT‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑t                                                           <  2:317582/251‑1 (MQ=255)
                                                                                                                                                                                                     aaaaaaaaaCCACATTTTTGGTGGTGGTTTGTGGCGG‑GAA‑ATTTTCCAAGA‑AAAAAAAAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCAAAAG‑TAAAAA‑GCAACAGGCAGTAAA‑TAATTTGA‑CA‑G‑AGATTGCCGCAAAT‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGacaac                                                 <  1:8462/246‑1 (MQ=255)
                                                                                                                                                                                                          aaaaCCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTCC‑GA‑CAAAAACAAAAA‑ATGG‑AGTTGCCATGAATG‑GGGGAAG‑TAATAA‑ACAACAGGGAGCGGA‑TAAATTGG‑AA‑G‑AGAATGTCGCCCAA‑TTTT‑TCGCCATGATTTTTACCCCAAAGCCTGGTGACGTGGGGGGTAAAACAAAACAGAAAAAAGGTGCCGGAACGTCGTCGGTGGGGAAAATTATCTACCATaagcagatcgaccacatgc                                              >  1:539011/1‑232 (MQ=255)
                                                                                                                                                                                                             aCCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTCC‑GA‑CAAAAACAAAAA‑ATGG‑GGTTGCCACGA‑TGAGAGAAAA‑GAATAA‑AGAAAACGCAGTGAA‑TAAATTGA‑CA‑G‑AAAATGTCGCTCAA‑TTTT‑CCGCCCTGATTTTTACCCCAAAGCCTTATGACGTGGTGGGTAAAATAAAACAACCAAAAGATGTCGAAAAGTCGTCGATGGGGGAAAATATATAACAAACGAGTGTT‑GACAACAAGCaaa                                          >  1:266705/1‑250 (MQ=255)
                                                                                                                                                                                                              ccaaaTTTTTAGGGGTAGTTTGTGGCGGTAAA‑TTATTCCA‑AA‑AAAATAAAAAAA‑CGGG‑AGTTGCTATGA‑GGAGCAAAAG‑AAAAAA‑GAAACGGGCA‑TGAAATAAGTTGA‑AA‑G‑ATTTTGTCTTTAAT‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACATCATGCaaaaa                                        <  2:225833/247‑1 (MQ=255)
                                                                                                                                                                                                                                  tggggCGGTGAA‑TTTTTCAA‑GA‑AAAATACAAAAA‑CGGG‑AGTTGCTATGA‑AGAGCAAAAG‑AAATAA‑GCAACAGGCAGTAAA‑TAAGTTGA‑CA‑G‑GGTTTTTCGCTAAC‑TTTC‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTc                     <  2:204720/247‑1 (MQ=255)
                                                                                                                                                                                                                                    tgGCGGTGAA‑TTTTTCCA‑GA‑ACAATACAAGAA‑CTGG‑AGTTGCCATGG‑TGAGCGAAAG‑TAATAA‑GCAAAAGGCAGTGAA‑TAAGTTAA‑CA‑G‑AGCTTGTCGCTAAC‑TTTC‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTTAAGGATGCCGAAACGACGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCTACAANATGCAACAAGCGATTTCCCTGAAACGTcct                   >  2:335104/1‑250 (MQ=255)
                                                                                                                                                                                                                                    gggcgggtaa‑TTTTTCCA‑GA‑AAAAAACAAAAA‑CTGG‑AGTTCCCTTGA‑TGAGCGAAAG‑TAAAAA‑GCAACAGGCAGTAAA‑TAAGTTGA‑CA‑G‑GGTTTGCCCCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGAGGGGGAAAATTAGCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg                  <  1:482124/243‑1 (MQ=255)
                                                                                                                                                                                                                                        ggTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcctg              >  1:132276/1‑251 (MQ=255)
                                                                                                                                                                                                                                            aa‑TTTTCCAA‑GA‑AAAATACAAAAG‑CTGG‑GTTTGCAATGA‑TGAGCGAAAG‑AAAAAA‑GCAACAGGCGGGGAA‑TAAGTTGA‑AA‑G‑AGTGTGTCG‑TAACCTTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAGCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTCAATCGTCCTGCCTGTCAg          <  2:642496/251‑1 (MQ=255)
                                                                                                                                                                                                                                                   cccA‑GA‑CAAAAACAAAAA‑CGGG‑ATTTGCAATGA‑GGGGCAAAAA‑TAATAA‑GCAACAGGCGTTGAA‑TAATTGGA‑CA‑G‑AGATTGTCGCTATT‑TTTT‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTGCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACAcc    <  1:487394/250‑1 (MQ=255)
                                                                                                                                                                                                                                                    ccA‑GA‑AAAATACAAAAA‑CGGG‑TGTGACCGTGA‑GGAGCAAAAT‑TAAAAA‑GCAAAAGGCAGTGAA‑GAAGTGGA‑CA‑G‑GGTTGGTCGCTTAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACAcc    <  2:563918/250‑1 (MQ=255)
                                                                                                                                                                                                                                                         a‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgg  >  1:222497/1‑248 (MQ=255)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                  
CCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTT‑GATTCACGAACTGTTAATTACATA‑TTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCCA‑GA‑CAAATACAAAAA‑CTGG‑AGTTGCCATGA‑TGAGCGAAAG‑TAATAA‑GCAACAGGCAGTGAA‑TAAGTTGA‑CA‑G‑AGATTGTCGCTAAC‑TTTA‑CCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGA‑TGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGG  >  NC_000913/3206194‑3206686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑