Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,361,226	Δ9,811 bp		[gltF]–[nanE]	[gltF], yhcA, yhcD, yhcE, insH10, yhcE, yhcF, yhcG, nanQ, nanK, [nanE]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3361226	3371036	9811	62 [0]	[0] 64	[gltF]–[nanE]	[gltF],yhcA,yhcD,yhcE,insH10,yhcE,yhcF,yhcG,nanQ,nanK,[nanE]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3361225	0 (0.000)	62 (0.630)	58/492	0.3	100%	coding (50/765 nt)	gltF	periplasmic protein GltF
	?	NC_000913	3371037 =	0 (0.000)					intergenic (‑1/+47)	nanE/nanT	putative N‑acetylmannosamine‑6‑phosphate 2‑epimerase/N‑acetylneuraminate:H(+) symporter

GCGTACCGGAGAATCCTCCAGATCGCGTTTCACAATTCCAATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAATGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCC  >  NC_000913/3370788‑3371282                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      aatgaataattatcaccacaaaccacctcaccagcaccttattattcacatgatcgtaactataaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcac                                                                                                                                                                                                                                                      >  1:164528‑M2/250‑251 (MQ=255)    gaataattatcaccacaaaccacctcaccagcaccttattattcacatgatcgtaactataaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATc                                                                                                                                                                                                                                                   >  1:324221‑M2/247‑251 (MQ=255)         attatcaccacaaaccacctcaccagcaccttattattcacatgatcgtaactataaaattcattaaataaatacatcccagcaagttggctatttctgaacgcgttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTccc                                                                                                                                                                                                                                              >  2:545004‑M2/242‑251 (MQ=255)            atcaccacaaaccacctcaccagcaccttattattcacatgatcgtaactataaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTa                                                                                                                                                                                                                                           <  2:758852‑M2/13‑1 (MQ=255)                     aaccacctcaccagcaccttattattcacatgatcgtaactataaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGc                                                                                                                                                                                                                                  >  1:80421‑M2/230‑251 (MQ=255)                      accacctcaccagcaccttattattcacatgatcgtaactataaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGcc                                                                                                                                                                                                                                 <  1:513421‑M2/23‑1 (MQ=255)                         acctcaccagcaccttatgagtcacatgatcgtaactataacattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttaagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagatgctatttgtgcagcactttcACATCTTCCCTTAGCGAACGGCCCgg                                                                                                                                                                                                                              >  2:634355‑M2/226‑251 (MQ=255)                             caccagcaccttattattcacatgatcttaactataaaattcattaaataaatacagcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctagttgtgcagcactttcGCATCTTCCCTTAGCGAAAGGcccgggac                                                                                                                                                                                                                           <  2:579919‑M2/29‑4 (MQ=255)                                                           actataaaattcattaaataaattcatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgctccagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGtt                                                                                                                                                                                            <  2:258270‑M2/60‑1 (MQ=255)                                                           actataaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTGTGGtt                                                                                                                                                                                            <  2:198317‑M2/60‑1 (MQ=255)                                                                aaaattcattaaataaatacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGAc                                                                                                                                                                                       >  1:195493‑M2/187‑251 (MQ=255)                                                                                atacatcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGgcg                                                                                                                                                                       <  2:689948‑M2/81‑1 (MQ=255)                                                                                   catcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACNTTTGGTTTTGACTAAATCGTTTTTGGCGCTg                                                                                                                                                                    >  2:359089‑M2/168‑251 (MQ=255)                                                                                     tcccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGcc                                                                                                                                                                  >  1:439084‑M2/166‑251 (MQ=255)                                                                                      cccagcaagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGcc                                                                                                                                                                  >  1:263886‑M2/165‑250 (MQ=255)                                                                                           caagttggctatttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAacgg                                                                                                                                                            <  2:195493‑M2/92‑1 (MQ=255)                                                                                                     atttctgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaacataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCg                                                                                                                                                  >  2:658188‑M2/150‑251 (MQ=255)                                                                                                          tgaacgagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgagcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACCGGATTAACTTTTGGTTTTGACTAAATAGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGa                                                                                                                                              >  1:649517‑M2/145‑250 (MQ=255)                                                                                                               gagttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGtt                                                                                                                                        <  2:730905‑M2/112‑1 (MQ=255)                                                                                                                 gttatttatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggctatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGttt                                                                                                                                       >  2:255355‑M2/138‑250 (MQ=255)                                                                                                                       tatttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCg                                                                                                                                >  1:630664‑M2/132‑251 (MQ=255)                                                                                                                        atttacattcacaaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGCCTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACAGCTGAATGGTTTACCGTcgt                                                                                                                               >  2:515634‑M2/131‑250 (MQ=255)                                                                                                                                    aaacagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAg                                                                                                                   <  1:37592‑M2/133‑1 (MQ=255)                                                                                                                                       cagatatatatactgcttcagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTATTGACTAAATAGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGATTGGTTTACCGTCGATACCGTAAtgagaac                                                                                                                >  2:604689‑M2/116‑248 (MQ=255)                                                                                                                                                         cagctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGca                                                                                              <  1:16529‑M2/154‑1 (MQ=255)                                                                                                                                                          agctttttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGca                                                                                              >  1:458965‑M2/97‑250 (MQ=255)                                                                                                                                                                ttattttaaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGcaaccaac                                                                                        <  1:39965‑M2/160‑1 (MQ=255)                                                                                                                                                                      taaaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAAc                                                                                 >  1:626866‑M2/85‑251 (MQ=255)                                                                                                                                                                        aaaaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAAcgc                                                                               >  1:340633‑M2/83‑251 (MQ=255)                                                                                                                                                                          aaataaatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGCCTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCANCGCTTCCGGGCGCAACCAACGCTGAAcgcg                                                                              >  2:334419‑M2/81‑250 (MQ=255)                                                                                                                                                                               aatttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAgg                                                                        <  1:545004‑M2/176‑1 (MQ=255)                                                                                                                                                                                atttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGc                                                                       >  1:264354‑M2/75‑251 (MQ=255)                                                                                                                                                                                 tttgttattaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGc                                                                       >  1:742252‑M2/74‑250 (MQ=255)                                                                                                                                                                                       attaaggatatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACCGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATcc                                                                 >  1:335287‑M2/68‑250 (MQ=255)                                                                                                                                                                                              atatgttcatatgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAAt                                                         >  1:288660‑M2/61‑251 (MQ=255)                                                                                                                                                                                                atgttcatatgtttttcaaaaagaacaacacaacagctgctatttgtgcagcacattcACATCTTCCCTTAGCGAAAGGCCCGAACCATAGACAGCGCAACAGGATTAACTTCTGGTTTTGACTAAAACGCTTTTGGCGCTGCCAAACGGCAAGGCACCGCTGAATGGTTTACCGTCGATAGCGTCAAGAGAACGCAACGCTACCGGGCGCAACCAACGCTGAACGCGCGAAAGCATCTCCAGCccaagc                                                        >  2:476763‑M2/59‑248 (MQ=255)                                                                                                                                                                                                atgttcatatatttttcaaaaagaacctcacaacagctgctaattgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCGCGGCACCGCTGAACGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCCGGCGCAACCGACGCTGTACGCGAGAAGACATATCCAGCCCAATc                                                        <  2:63100‑M2/192‑1 (MQ=255)                                                                                                                                                                                                        atgtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAgcaggctc                                               >  1:343184‑M2/51‑248 (MQ=255)                                                                                                                                                                                                          gtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATACAGCCCAATCAGCAGGATcac                                             >  2:172349‑M2/49‑251 (MQ=255)                                                                                                                                                                                                          gtttttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTGCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATcac                                             <  1:137890‑M2/203‑1 (MQ=255)                                                                                                                                                                                                              ttcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATcaccac                                          <  1:62287‑M2/206‑1 (MQ=255)                                                                                                                                                                                                               tcaaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACCTAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTCCCGTCGATAGCGTCATGAGTAAGCAACGCTTCCGGGCGCAACCACAGCTGAACGCGAGAAGGCATATCCAGCCCACTCAGcaggatcccaccg                                         >  2:475871‑M2/44‑244 (MQ=255)                                                                                                                                                                                                                caaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGa                                        >  1:484734‑M2/43‑250 (MQ=255)                                                                                                                                                                                                                 aaaaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAAc                                      >  1:657647‑M2/42‑251 (MQ=255)                                                                                                                                                                                                                  aacagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACg                                     >  2:467930‑M2/41‑251 (MQ=255)                                                                                                                                                                                                                   aaagaacctcacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAAACGGCATATCCAGCCCAATCAGCAGGATCACCACGACCGt                                    >  2:708103‑M2/40‑251 (MQ=255)                                                                                                                                                                                                                      catcctcacaacagctgctatttgtgcagccctttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGTGCAACAGTATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGACCGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCCCCACGAACGTCAg                                 <  2:328158‑M2/215‑1 (MQ=255)                                                                                                                                                                                                                            cacaacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGAACACCACGAACGTCAGACTGa                            >  2:138045‑M2/31‑250 (MQ=255)                                                                                                                                                                                                                             acaaaagctgatatttgtgcagacccttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACGTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACTAACGTCAGACTGAAc                          <  2:742252‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                              caacagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACg                         >  1:646870‑M2/29‑251 (MQ=255)                                                                                                                                                                                                                                 cagctgctatttgtgcagcactttcACATCTTCCCTTAGCGAACGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGACCGTCAGACTGAACg                         >  2:617045‑M2/26‑248 (MQ=255)                                                                                                                                                                                                                                     tgctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGACAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAACCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCg                   >  2:550392‑M2/22‑250 (MQ=255)                                                                                                                                                                                                                                      tctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCg                   <  1:90481‑M2/229‑1 (MQ=255)                                                                                                                                                                                                                                      gctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGTCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGAt                 <  2:476059‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                                       ctatttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCTCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATNCCCACGAACGTCAGACTCAACGAGAGCGATg                >  2:369181‑M2/20‑251 (MQ=255)                                                                                                                                                                                                                                         atttgtgcagccctttcACATCGTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGcc              <  2:630664‑M2/234‑1 (MQ=255)                                                                                                                                                                                                                                           ttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGCTTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCAAGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCACCGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCAAGCCCAATCAGCAGGATCACCNCGAACGTCAGACTGAACGAGAGCGATGcc              >  2:335955‑M2/16‑249 (MQ=255)                                                                                                                                                                                                                                           ttgtgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCNCGAACGTCAGACTGAACGAGAGCGATGcc              >  2:357069‑M2/16‑249 (MQ=255)                                                                                                                                                                                                                                              tgcagcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCGTATCCAGCCCAATCAGCAGGATCACCACGCACGTCAGACTGAACGAGAGCGATGCCAgcgc         >  2:518527‑M2/13‑251 (MQ=255)                                                                                                                                                                                                                                                  gcactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGCTTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGGCAGACTGAACGAGAGCGATGCCAGCGCAGt      >  2:519981‑M2/9‑250 (MQ=255)                                                                                                                                                                                                                                                   cactttcACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGCCAGCGCAGTAc    <  2:288660‑M2/244‑1 (MQ=255)                                                                                                                                                                                                                                                       ttcACATCTTCCCTTAGCGAAAGGCCCGGAACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCAAGGCACCGCTGAATGGTTTACCGTCGAAAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCACATCAGCAGGATCACCACGACAGTCAGACTGAACGAGAGCGATGCCAGCGCAGTAccc  >  1:748345‑M2/4‑249 (MQ=255)                                                                                                                                                                                                                                                          acatCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGCCAGCGCAGTAccc  >  1:589582/1‑246 (MQ=255)                                                                                                                                                                                                                                                          acatCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGCCAGCGCAGTAccc  >  1:555091/1‑246 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      GCGTACCGGAGAATCCTCCAGATCGCGTTTCACAATTCCAATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAATGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCC  >  NC_000913/3370788‑3371282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑