| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,196,867 | Δ27,041 bp | [ymfD]–ymgJ | 37 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, ymfN, ymfR, beeE, ymfQ, ycfK, tfaP, tfaE, pinE, mcrA, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ymgD, ymgG, ymgI, ymgJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196867 | 1223907 | 27041 | 38 [0] | [0] 38 | [ymfD]–ymgJ | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ymgD,ymgG,ymgI,ymgJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1196866 | 0 (0.000) | 38 (0.390) | 35/490 | 1.0 | 100% | intergenic (+84/+1) | C0293/ymfD | small regulatory RNA C0293/putative SAM‑dependent methyltransferase YmfD |
| ? | NC_000913 | 1223908 = | 0 (0.000) | intergenic (+459/+371) | ymgJ/minE | uncharacterized protein YmgJ/Z‑ring positioning protein MinE | |||||
AATGAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGT > NC_000913/1223671‑1224142 | attcactgttattaggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTa > 1:471350‑M2/238‑250 (MQ=255) attaggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTc < 2:623341‑M2/24‑1 (MQ=255) ggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGgcg < 1:248875‑M2/28‑1 (MQ=255) aattatgaattaccactccttacacctgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGt < 1:251156‑M2/32‑1 (MQ=255) atgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGtttt < 2:548182‑M2/35‑1 (MQ=255) gaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGt > 2:266963‑M2/214‑251 (MQ=255) attaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcccccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgctgccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGttt < 2:495948‑M2/40‑1 (MQ=255) ttaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGttt > 2:264330‑M2/211‑250 (MQ=255) actccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcaccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCGTCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAgg > 1:379398‑M2/206‑250 (MQ=255) ctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGaa > 2:700505‑M2/192‑250 (MQ=255) atattgttaaagtgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCt < 2:21849‑M2/65‑1 (MQ=255) atttttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTgg < 1:126177‑M2/67‑1 (MQ=255) attgttaaattgccggttttgtatcaactactcacccgggactcgccaggggaccgacaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCACAGATTAAACTGCGCTTCGGCGCAATTTTCGTTTACAGGATGTTGAAAGGGAAAATTATgg > 1:336018‑M2/185‑251 (MQ=255) attgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTgg > 1:439775‑M2/185‑251 (MQ=255) aaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑aa > 1:371154‑M2/179‑250 (MQ=255) ggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGACAGGGAAAATTCTGGGGC‑AAAAAAAGccc > 2:559269‑M2/171‑251 (MQ=255) ttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAACATTCTGGGGC‑AAAAAAAGCCCGcc > 1:432780‑M2/167‑250 (MQ=255) ttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGcc > 1:165563‑M2/167‑250 (MQ=255) tgtatcaactactcacccgggccgcgccaggggacagcaaacagggattgggtgcaagcaccttagcttttaggtacatgcggaatggaaaaaaggccgcgagcgctgtccctacccatacatctttagtactgagactgtttaatctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGGTTTCGTTTACAGGATGTGGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCa < 2:167007‑M2/85‑1 (MQ=255) tatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggcaccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGtt > 1:327119‑M2/164‑251 (MQ=255) cgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGGCAAaccc > 1:583364‑M2/149‑250 (MQ=255) gactcgccaggggacagccaacaggcattgggtgaaatcaccttagcgttcaggtacatgcggaatgtaaacaaggccgcgagcgcggccccttcacatacatatttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAaagcccgccagttacgtagggagaactcat > 2:571052‑M2/146‑236 (MQ=255) aggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTacggcgggg‑aaacccaccccatgggg > 1:645591‑M2/138‑239 (MQ=255) gacagccaacaggcattgggtgcaatcaccttagcgttcagttacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagtctgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAAc < 2:198729‑M2/118‑1 (MQ=255) gacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaaggtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAAc < 1:323444‑M2/118‑1 (MQ=255) gccaacaggcattgggggcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttctcatacatctttaggactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTGCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTTGGGT‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATg < 1:34941‑M2/122‑1 (MQ=255) ggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATg < 1:401290‑M2/129‑1 (MQ=255) caccttagcgttcaggtacaggcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtcCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTat < 2:471350‑M2/144‑1 (MQ=255) tagcgtccaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTatcat < 2:264211‑M2/147‑1 (MQ=255) acatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑GAACCCCCTCCCATTGGTGAACAATGAATAAAGAAAATTCGGGGGTATTATCTCCCAgcatattc > 1:742638‑M2/91‑249 (MQ=255) atgcggaatgtaaaaaaggccgcgagcgcggncccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCAt < 2:371154‑M2/163‑1 (MQ=255) cgcgagcgcggccccttcacatacatctttantactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTa < 2:344835‑M2/183‑1 (MQ=255) ggccccttcacattcatctttagtactgagactttttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGTGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAg < 1:700505‑M2/192‑1 (MQ=255) gccctttcacatacatctttagtactgagacngtttaacctagggaatttttgtcgtcCCAGCAACGATAAACCGGAGCTTCGGCGCAGTTTTCGGTTACAGGATGTTGAAAGGGAAAATTTTGGGGC‑AAAAAAAGACCGCCAGTTACGTC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTAGTTACTCAACCAgg < 2:379398‑M2/193‑1 (MQ=255) ttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGTTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACAttttgttt < 2:645591‑M2/209‑1 (MQ=255) cctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAg < 1:738131‑M2/231‑1 (MQ=255) ggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACGGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGgtgt < 1:288759‑M2/236‑1 (MQ=255) ttgtcgtaCCAGCAACGATTAAACTGCGCTTCGGCGCAGTATTCGTGTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACt < 2:87641‑M2/166‑1 (MQ=255) | AATGAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGC‑AAAAAAAGCCCGCCAGTTACGGC‑GGG‑AAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGT > NC_000913/1223671‑1224142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |