| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,196,867 | Δ27,041 bp | [ymfD]–ymgJ | 37 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, ymfN, ymfR, beeE, ymfQ, ycfK, tfaP, tfaE, pinE, mcrA, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ymgD, ymgG, ymgI, ymgJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196867 | 1223907 | 27041 | 25 [0] | [1] 25 | [ymfD]–ymgJ | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ymgD,ymgG,ymgI,ymgJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1196866 | 0 (0.000) | 24 (0.330) | 23/490 | 1.3 | 100% | intergenic (+84/+1) | C0293/ymfD | small regulatory RNA C0293/putative SAM‑dependent methyltransferase YmfD |
| ? | NC_000913 | 1223908 = | 0 (0.000) | intergenic (+459/+371) | ymgJ/minE | uncharacterized protein YmgJ/Z‑ring positioning protein MinE | |||||
GGAACGGTATGGAAATGAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCA‑GGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAA > NC_000913/1223658‑1224145 | aagttagttatttattcactgttattaggacaattatgaattcccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtac < 1:501212‑M2/1‑1 (MQ=255) agttatgtattcactgttattaggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATc < 2:322896‑M2/5‑1 (MQ=255) caattatgaattaccactccttacacccgctcaaatattgttaaattaccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAg < 1:157825‑M2/31‑1 (MQ=255) aattatgaattaccactccttacacctgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctctagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGt > 1:163010‑M2/220‑251 (MQ=255) ttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggcatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTg > 2:517813‑M2/201‑251 (MQ=255) acccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGaa > 1:465925‑M2/197‑249 (MQ=255) cgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGa < 1:289250‑M2/58‑1 (MQ=255) caatcttgttaaattgccagttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcgggatgaaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattttcgtaCCATCAACGATTAAACTGCAATTAGACGAAGTTTACGTTTACAGGATGTTGAAAGGGAAAAtt > 2:487692‑M2/189‑251 (MQ=255) aaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacctgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGgcg > 2:355401‑M2/189‑216 (MQ=255) aaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGgcg < 1:355401‑M2/28‑1 (MQ=255) ccggttttgtatcaactactcacccgggactcgccaggggacagccaaccggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGACAGGGAAAATTCTGGGGCAAAAACAGc > 2:50751‑M2/173‑251 (MQ=255) cggttttgtatcaacaactcacccgtgactcgccaggggacagccaacaggcattgtgtgcaatcactttagcgttcaggtacatgcgtaatgtaaaaaatgccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagtgaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATGCTGGTGCAAAAAAAGcc < 2:5241‑M2/80‑1 (MQ=255) ctactcaccccggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagagcggccccttcacatacatcttgagtactgagactgtttaacctagggtattattgtcgtaCCATCAATGATTAACATGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGCAAGGGAAACTTCTGGGGCAAAAAAAGCTCGCcagttaacgcg > 2:47056‑M2/158‑246 (MQ=255) cacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGaaa < 1:371860‑M2/99‑1 (MQ=255) ccccgggactgccccggggacagccaacaggcattgggtgaaacccccttggctttcaggtacatgcggaatgtaaaaaaggccgcgagcgctgccccttcacatacatctttagttctgagacagtttaaccgagggaattattgtcgtaCCATCAACGATTAAACTGCGCTGCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAAc < 2:358499‑M2/100‑1 (MQ=255) cccgggactcgccaggggacagccaacaggcattgggtgcaatccccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAAcc < 1:536714‑M2/101‑1 (MQ=255) cgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggagtgtaaaaaaggccgcgagcgcggccctttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTc < 1:503607‑M2/103‑1 (MQ=255) ggattcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCAt < 1:499708‑M2/105‑1 (MQ=255) ctcgccaggggacagccaacaggcattgggtgcaatcaccttcgcgttcaggtacatgcggaatgtaaaaaaggccgcgagcacggccccttcacatacatctttagtactgagcatgtttaacctcgggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGCAAGGGAACATTCTGGGGCAAAAAAAGCCAGCCAgttacggcgggacaactccaaac > 2:348127‑M2/144‑240 (MQ=255) aggggacagccatcagtcattgggtgcaatccccttagcgttcaggtacaggcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTGCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGga < 1:98019‑M2/114‑1 (MQ=255) cagccaacaggcattgggtgcaatccccttagcgttcaggtacatgcggaatgtaaaaaaggccgctagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACaa < 1:90134‑M2/120‑1 (MQ=255) ccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTAttt < 1:87568‑M2/182‑1 (MQ=255) acatctttagttctgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCA‑GGCATAAACAtttt < 1:336156‑M2/205‑1 (MQ=255) gtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCA‑GGCATAAACATTTTGTTTTGTGCGTGGGAACAGc < 1:465316‑M2/225‑1 (MQ=255) attattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAAACCCATCCTATAGGAGGACAAAGAAAAAAGAAATTGCGGGGGTGTCATCTCCCCGTGTATCCATACTAACAAAAAGGTTATTTAATCAACCACGGC‑TAAAAAATTTTTTTTTTGTGGGGGAACAGCCCTAAgggggaaa > 1:324021/12‑244 (MQ=255) | GGAACGGTATGGAAATGAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCA‑GGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAA > NC_000913/1223658‑1224145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |