| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,361,226 | Δ9,811 bp | [gltF]–[nanE] | [gltF], yhcA, yhcD, yhcE, insH10, yhcE, yhcF, yhcG, nanQ, nanK, [nanE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3361226 | 3371036 | 9811 | 38 [0] | [0] 40 | [gltF]–[nanE] | [gltF],yhcA,yhcD,yhcE,insH10,yhcE,yhcF,yhcG,nanQ,nanK,[nanE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3361225 | 0 (0.000) | 38 (0.520) | 35/492 | 0.6 | 100% | coding (50/765 nt) | gltF | periplasmic protein GltF |
| ? | NC_000913 | 3371037 = | 0 (0.000) | intergenic (‑1/+47) | nanE/nanT | putative N‑acetylmannosamine‑6‑phosphate 2‑epimerase/N‑acetylneuraminate:H(+) symporter | |||||
TCACATGATCGTAACTATAAAATTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACCCCTGGTGCATGTACCCCAGTTGTTACGGGCGGCGGCATTGTTGACTATGGGAAACATCATAACAGTGCGCTGAATCCGACCGGTAAAAGTAATAAACTGGTTCAACTGGGCCGCAAAAACAGCACATTAAATATAACCTGCACAGCACCAACGCTAATTGCTGTAACCTCCAAGGA > NC_000913/3361022‑3361471 | tCACATGATCGTAACTATAAAATTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacagg < 2:164276‑M1/250‑47 (MQ=255) aTGATCGTAACTATAAAATTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggatta > 1:537212‑M1/1‑200 (MQ=255) tCGTAACTATAAAATTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttt > 1:511209‑M1/1‑196 (MQ=255) aaCTATAAAATTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggt < 1:164358‑M1/251‑60 (MQ=255) aaTTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgacta < 1:44124‑M1/251‑68 (MQ=255) ataaataCATCCCAGCAAGTTGGCTATTTTTNAGCTGTTTATTTATTTACATTCACAAACAGATATATATACTTCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGTTTTGTTCATATGTTTTTCAAAAAGAACCTCACAACATCTGCTATTTGTGCAGCACTTTCacagctgcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgcctaaatcgttttt < 2:277317‑M1/251‑78 (MQ=255) aaGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcttttttggcgctgccaaacggc < 2:236255‑M1/251‑94 (MQ=255) gttggcttattatgaacgaattattTAAGTACATTCGCAAACATATATAGATACTGCTTCATCGATTTATTGTATAAAATAAATTTGGTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTGGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggatgatcttttggttttgactaaatcgtttttggcgctgccaaacggcac < 2:226821‑M1/239‑96 (MQ=255) tGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacgg > 1:97573‑M1/1‑154 (MQ=255) gAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaa < 2:163730‑M1/250‑108 (MQ=255) tataCTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacg > 2:365562‑M1/1‑107 (MQ=255) aCTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttcc > 1:518844‑M1/1‑104 (MQ=255) cTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggcttaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggc > 2:121057‑M1/1‑100 (MQ=255) cAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgc > 2:191368‑M1/1‑97 (MQ=255) tattttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTTCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaactttttgttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcacccaacgc > 1:275055‑M1/1‑89 (MQ=255) aaaaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaac < 2:573595‑M1/250‑168 (MQ=255) aaaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgc > 1:101307‑M1/1‑82 (MQ=255) aaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggccccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcg > 2:381980‑M1/1‑81 (MQ=255) aaataaatTTGTTATTACCGATATGTTCATCTGATTTTCGAAAAGAACATCACAACAGCTGCTATTTGTGCAGCAATTTCacatcttcccttagcgaaaggcccgataactagcccaggccacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggctcaaccaaagctgaacgcg > 2:475578‑M1/1‑80 (MQ=255) attaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgcctaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcacccaacgctgaacgcgagaaggcatatcc > 2:232154‑M1/1‑67 (MQ=255) tCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagc > 1:259562‑M1/1‑54 (MQ=255) cATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcagg > 1:333084‑M1/1‑53 (MQ=255) gTTTTTAAAAAAGAACCTCACAACCGCTGCTTTTTGTGCAGCTCTTTAccatcttcccttagcgaaaggcccggtgcatagaccgggcatcatgattaacgtttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtactcaacgcttccgtgcgcaaccaatgctgaacgcgataaggcatctccagccctatccgcaggatca < 2:545920‑M1/250‑203 (MQ=255) cAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcntatccagcccaatcagcaggatcaccacga > 2:270798‑M1/1‑42 (MQ=255) aaaaaGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcac < 2:182779‑M1/136‑96 (MQ=255) aaaaaGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcac > 1:182779‑M1/1‑41 (MQ=255) aaaGAACCTCACAACAGCTGCTATTTGCGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaactcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcaggatcaccacgaacgg > 2:28742‑M1/1‑39 (MQ=255) aGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcaggatcaccacgaacgtc > 2:116970‑M1/1‑37 (MQ=255) caacaGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcaggatcaccacgaacgtcagactgaacg > 2:54638‑M1/1‑28 (MQ=255) caacaGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaaagcgagaaggcatatccagcccaatcagcaggatcaccacgaacgtcagactgaacg > 1:549556‑M1/1‑28 (MQ=255) aacaGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgacta < 1:372437‑M1/94‑68 (MQ=255) aacaGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgacta > 2:372437‑M1/1‑27 (MQ=255) caGCTGCTATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcaggatcaccacgaacgtcagactgaacgaga < 1:83531‑M1/251‑227 (MQ=255) gctgctATTTGTGCAGCACTTTCacagcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgcggaacgcgagaaggcatatccagcccaatcagcaggatcaccacgaacgtcagactgaacgagagc < 1:269308‑M1/251‑229 (MQ=255) ctgctATTTGTGCAGCACTTTCacatcttcccttagcgcaaggcccggtacatagaccgggcaacaggcttaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttcagggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcaggatcaccacgaccgtcagaccgcacgagaccg > 2:215118‑M1/1‑22 (MQ=255) gctATTTGTGCAGCACTTTCacatcttcccttagcgaaaggcccggtacatagaccgggcaacaggattaacttttggttttgcctaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcatatccagcccaatcagcaggancaccacgaacgtcagactgaacgagagcgat > 2:283616‑M1/1‑20 (MQ=255) tATTTGAGCAGCACTTTCacatcttcccctagcgaaaggcccggtacatagaccgggcaacaggattaacttatggttttgactaaatcgtttttggcgctgccaaaaggcacggcaccgctgaatggtttaccgtcgatagcgtcataagcacgcaacgcttccgggcgccaccaacgctgacagcgagaaggcatatccagcccaatcagcagaataacaacgaaagtacgaatgaacgagagcgatg > 2:384083‑M1/1‑18 (MQ=255) ttCacatcttcccttagcgaaatgcccggtacatagaccgggcaacaggattaacttttggttttgactaaatcgtttttggcgctgccaaacggcacggcaccgctgaatggtttaccgtcgatagcgtcatgagtacgcaacgcttccgggcgcaaccaacgctgaacgcgagaaggcctatccagcccactacgcaggatcaccacgaacgtcagactacacgagagcgatgccagcgaaggaccc > 2:4239‑M1/1‑3 (MQ=255) | TCACATGATCGTAACTATAAAATTCATTAAATAAATACATCCCAGCAAGTTGGCTATTTCTGAACGAGTTATTTATTTACATTCACAAACAGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACCCCTGGTGCATGTACCCCAGTTGTTACGGGCGGCGGCATTGTTGACTATGGGAAACATCATAACAGTGCGCTGAATCCGACCGGTAAAAGTAATAAACTGGTTCAACTGGGCCGCAAAAACAGCACATTAAATATAACCTGCACAGCACCAACGCTAATTGCTGTAACCTCCAAGGA > NC_000913/3361022‑3361471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |