Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,640,057 Δ7,591 bp [rrrQ][dicC] 18 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1640057 1647647 7591 50 [0] [0] 50 [rrrQ]–[dicC] [rrrQ],[ydfR],essQ,ynfU,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,[dicC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16400560 (0.000)50 (0.690) 47/492 0.2 100% coding (2/534 nt)
coding (310/312 nt)
rrrQ
ydfR
putative lysozyme
protein YdfR
?NC_000913 1647648 = 0 (0.000)coding (203/231 nt) dicC putative DNA‑binding transcriptional regulator DicC

CACGCTCAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATTTTTGTGTTCATAGATATTTATGATGAGGACGCTCGTGCTTATTGGCAGGATTTTCAATCTTAAAGGAGTACTGATGCTGCAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTGCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAATTTCACCGTCAAAGCGTTCT  >  NC_000913/1639811‑1640282
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                  
cccgcTCAATGGCGTTGATCTGGTCGATTTTTTCCTTCGACAGTTTCATATTGGGAAAATCGGTTTTTCCATCCACCACTGGTGCACCCCGACAGTTGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCGTCTTGTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCACGCTCCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTGTTGTGTTCAccc                                                                                                                                                                                                                                 <  2:297965‑M1/248‑4 (MQ=255)
 ccgCTCAATGGCGTTGACCGGGGCGCATTTTTACTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgc                                                                                                                                                                                                                               <  1:488608‑M1/250‑6 (MQ=255)
      cAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgct                                                                                                                                                                                                                          <  1:88419‑M1/251‑11 (MQ=255)
      cAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccg                                                                                                                                                                                                                            <  1:103541‑M1/249‑9 (MQ=255)
                           aTTTTTCCTTCGACAGTTCCATAGTGGGAAAAACGGTTTTTCCACCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCTCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcat                                                                                                                                                                                                     <  2:150563‑M1/251‑32 (MQ=255)
                            tttttCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGACGTATCTGATCTTTTGTGGTTAcccgcccgcttcgtcttacgatattcatcat                                                                                                                                                                                                     >  1:404510‑M1/1‑219 (MQ=255)
                                 catgagactgtttcatagtGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATAGGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGAGGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcacgcttcgtcttacgatattcatcataaact                                                                                                                                                                                                <  2:107453‑M1/241‑37 (MQ=255)
                                           tttCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGTTGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATATTTGGTGTTCAcccgcccgcttcgtcttacgatattcatcatgaaatttgggatcat                                                                                                                                                                                      >  1:6293‑M1/1‑204 (MQ=255)
                                               atatTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactg                                                                                                                                                                                  >  1:551386‑M1/1‑200 (MQ=255)
                                                  ttGGGAAAAACGGTTTTTCCATCCACCCCTGTGGCACCCCGACAGCTGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGAATCTGAGGAGCAGATGCGCCAGAACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATATGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgcagc                                                                                                                                                                              >  2:64480‑M1/1‑197 (MQ=255)
                                                    gggAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGGCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcagcataaactttgggatcatactgaagctc                                                                                                                                                                            <  2:551386‑M1/251‑57 (MQ=255)
                                                         aaaCGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCACGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGCAAGCCGACAGGCCGTATCTGATCTTTTGTGGTCAcccgcccgcttcgtcttacgatattcatcntaaactttggtatcatactgaagatccccgc                                                                                                                                                                       >  2:275806‑M1/1‑190 (MQ=255)
                                                          aaCGGTTTGTCCATCCACCACGGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTTTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgcc                                                                                                                                                                      <  1:411994‑M1/251‑63 (MQ=255)
                                                                 tttCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcc                                                                                                                                                               >  1:334969‑M1/1‑182 (MQ=255)
                                                                 tttCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGGGGTTCCCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACCGGCCGTATCTGATCTTTTGTGTTCAcccgaccgcttcgacttacaatattcatcataaactttgggatcatactgcagctcccagacatatgcc                                                                                                                                                               >  2:94570‑M1/1‑182 (MQ=255)
                                                                    ccatccaCCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcc                                                                                                                                                            <  1:341576‑M1/251‑73 (MQ=255)
                                                                      atccaCCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctg                                                                                                                                                          >  1:312950‑M1/1‑177 (MQ=255)
                                                                          accacTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagaagcctcctgtat                                                                                                                                                       >  2:112426‑M1/1‑173 (MQ=255)
                                                                                gtgGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatc                                                                                                                                                <  1:429916‑M1/251‑85 (MQ=255)
                                                                                          gACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgacctt                                                                                                                                      >  2:466633‑M1/1‑157 (MQ=255)
                                                                                              gATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcggg                                                                                                                                  <  1:267459‑M1/251‑99 (MQ=255)
                                                                                                  gTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCCCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaact                                                                                                                              <  1:206665‑M1/251‑103 (MQ=255)
                                                                                                        atGCCAGAACCACCGCGGTAGGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAACCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcc                                                                                                                        <  2:91421‑M1/251‑109 (MQ=255)
                                                                                                                                          tACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatac                                                                                      >  1:327448‑M1/1‑109 (MQ=255)
                                                                                                                                                ttttttcGTCACGAAACGGGTAAAGTATCTAGGGAGCAGATGCTCCAGCACCAACCAGCGCCAGACCGCCAGCCTCCAGGCCGTATCTGATCTTTGGTGTTCCcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccatacgaatacctgct                                                                                 <  2:475110‑M1/249‑148 (MQ=255)
                                                                                                                                                   ttacgtcCGGAACCTGGTCAAGTACCGGAGGAGCAGATGGGCCAGCCCCATTCAGCGCCAGAACGCCGCCCGCAAGGCCGTATCTGATATTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcagactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgct                                                                              <  2:312950‑M1/247‑151 (MQ=255)
                                                                                                                                                    ttCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgctt                                                                             <  1:83405‑M1/250‑152 (MQ=255)
                                                                                                                                                     tCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCCGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcctcgcgcgaccttcgggaactaaatcccctttccagctctaaagcgaagccaaacgaatacctgctgcttgt                                                                           >  1:461172‑M1/1‑98 (MQ=255)
                                                                                                                                                      cGTCCAGAAACGGGGCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCGGCGTCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattaatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgt                                                                           <  1:275806‑M1/250‑154 (MQ=255)
                                                                                                                                                             aaaCTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttt                                                                   <  1:137991‑M1/251‑162 (MQ=255)
                                                                                                                                                                     acattatcgaaggagcagttgcgccACAACCAACCAGCGCACGAAGGGCTGCCTACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgttttt                                                            <  2:532501‑M1/240‑169 (MQ=255)
                                                                                                                                                                          aTCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccg                                                      >  1:198243‑M1/1‑77 (MQ=255)
                                                                                                                                                                            cTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccga                                                     >  2:408805‑M1/1‑75 (MQ=255)
                                                                                                                                                                              gaggggcagatgctccctacccaatcagcgcctgaacggcacCCGTCAGGCCTTATTTGATCTTTTGTGTTCCccctcccgcttcgtcttacgatattcatcataaactttgggatcatactgaaactccccgccatatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgatccgaaa                                                   <  2:402163‑M1/230‑178 (MQ=255)
                                                                                                                                                                                 gagCAGATGCGCCAGCCCCAATCAGCGCCAGACCGGCAGCCGACAGGCCGTATCTGATCTTTTTTGTTCCcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaataca                                               <  2:111690‑M1/251‑182 (MQ=255)
                                                                                                                                                                                          cgcCCGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgt                                      <  2:550006‑M1/251‑191 (MQ=255)
                                                                                                                                                                                          cgcCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgt                                      <  1:436798‑M1/251‑191 (MQ=255)
                                                                                                                                                                                                    gcacagcGCCAGAACGGCGGCAGACAGCCCGGACCTGATCTTTTGTGTTCCcccgcccgcttcgtcttacgatattcatcataaacgtcgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctgtccagctataaagcgatgacaaacgaagacctgctgcttgtgcaagtattgtttttgaaccgaaatacaaaagagcatcagttttaag                            <  2:188787‑M1/248‑201 (MQ=255)
                                                                                                                                                                                                      tCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttganccgaaatacaaaagagcgtcagt                                  >  2:265743‑M1/1‑49 (MQ=255)
                                                                                                                                                                                                      tCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagt                                  <  1:265743‑M1/243‑195 (MQ=255)
                                                                                                                                                                                                       cAGCGCCAGACCGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttaagcat                         <  1:77156‑M1/251‑204 (MQ=255)
                                                                                                                                                                                                           gcCAGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttaagcatttaa                     <  1:36647‑M1/251‑208 (MQ=255)
                                                                                                                                                                                                              aGAACGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttaagcatttaaaac                  >  1:353942‑M1/1‑41 (MQ=255)
                                                                                                                                                                                                                 aCGGCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttatgcatttaaaccacc               >  1:238782‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                                   ggCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagtt                                                                    <  1:557004‑M1/196‑161 (MQ=255)
                                                                                                                                                                                                                   ggCAGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagtt                                                                    >  2:557004‑M1/1‑36 (MQ=255)
                                                                                                                                                                                                                     cgcccgacTGGCCGTATCTACACTTTTGAGTTCAcccccccgcttcgtcttacgatattcatcataaactttgggaacattcggaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttatgaaccgaaatacaaaagagcgtcagttttaagcatttaaaacaccctta           <  2:1970‑M1/248‑218 (MQ=255)
                                                                                                                                                                                                                      aGCCGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttaagcatttaaaacacctttat          >  1:505728‑M1/1‑33 (MQ=255)
                                                                                                                                                                                                                         cGACAGGCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttaagcatttaaaacacctttattgt       <  1:316168‑M1/251‑222 (MQ=255)
                                                                                                                                                                                                                              ggCCGTATCTGATCTTTTGTGTTCAcccgcccgcttcgtcttgcgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagttttaagcatttaaaacacctttattgttagtc  <  1:2025‑M1/251‑227 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                  
CACGCTCAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATTTTTGTGTTCATAGATATTTATGATGAGGACGCTCGTGCTTATTGGCAGGATTTTCAATCTTAAAGGAGTACTGATGCTGCAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTGCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAATTTCACCGTCAAAGCGTTCT  >  NC_000913/1639811‑1640282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: