Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,312,070 Δ1 bp intergenic (‑28/+31) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,312,0690G.97.6% 186.5 / ‑1.6 42intergenic (‑27/+32)alsB/alsRD‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base . (16/25);  total (16/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01

ATTGAAAATCGCCTTCTGAAGGAGAGGCAAAAATATCAACGCTGACGCCCAGTGTTTTTGCTTCATCTTCAATGCCTTTTTTCATATCTACCCAAAATGGGTTGGAGAGGGTTTTCAATACGACAGCATATTCGGCGGCAGCAAAAGCGCTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCAAATAATATAATCGGCCAGTTTCGCTATCGGTGAAT  >  NC_000913/4311835‑4312315
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      
gatcgacgaccaggttgattttgcaacctgatgcgcaatagggtcaaaccgtgacgtcttttttcatcgctctcgctccagttaatcaaatcacgcatacgcgctctcgactacaatatgcatcttttattccacattttatgtggggtcattccctgatattacgggctctatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGc                                                                                                                                                                                                                                        <  2:169014‑M2/28‑1 (MQ=255)
  tcgacgaccaggttgattttgcaaactgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGcggg                                                                                                                                                                                                                                     >  2:204527‑M2/221‑250 (MQ=255)
     ccgaccaggttgattttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAAtt                                                                                                                                                                                                                                  <  1:417750‑M2/34‑1 (MQ=255)
      cgaccaggttgattttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAAtt                                                                                                                                                                                                                                  >  1:177416‑M2/217‑250 (MQ=255)
       gaccaggttgattttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTAc                                                                                                                                                                                                                                >  2:26511‑M2/216‑251 (MQ=255)
           aggttgcttttgcaacctgatgcgcaatcggggcaaaccgtgacgacttttttcatcgggctcgctccatttaatcaaatcacgcatacgcgctctcgattacagtatgcatcttttatgccacattttatgttgggtcattccctgatattacgggcactatttattcaaaactcggacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGTACAGTAACTCCGCGATGGCGGAAGTACCttt                                                                                                                                                                                                                            <  2:466873‑M2/40‑1 (MQ=255)
               tgattttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTc                                                                                                                                                                                                                         <  1:392364‑M2/43‑1 (MQ=255)
               tgattttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTc                                                                                                                                                                                                                         <  2:330775‑M2/43‑1 (MQ=255)
                gattttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCtt                                                                                                                                                                                                                       <  2:218673‑M2/45‑1 (MQ=255)
                    ttgcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGCAATTACCTTTTTCTTAtt                                                                                                                                                                                                                    <  2:446103‑M2/48‑1 (MQ=255)
                      gcaacctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTc                                                                                                                                                                                                                  >  2:215848‑M2/201‑250 (MQ=255)
                        aacctgatgcgcaatcgcggcaaaccgtgacgacttttttcatcgctctcgctccagctaatcaaatcacgcatacgcgatctcgactacagtatgcatcttttatgccacattttatgtggggtaataccctgatattacgggccctatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGCAAGGGGACAGTAACTCCGCGATGGGGGAATTACCTTTTTCTTAtttcggc                                                                                                                                                                                                               >  2:35807‑M2/199‑248 (MQ=255)
                          cctgatgcgcaataggggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCagcgt                                                                                                                                                                                                             <  2:197353‑M2/55‑2 (MQ=255)
                               ggcgcaataggtgcaaaccgttgcgacttttttcagcggtctagatgcagttaatcaaatcacgcatacgagctctcgactacagtatgcatcttttatgccacattttaggtgtggttattcccttgtattacgggcactatttattcaaaactctgactaaaaacaggctgtcgtcagttttgtcgtgcGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTtcagcgcgtcg                                                                                                                                                                                                         <  2:282981‑M2/59‑4 (MQ=255)
                                         gggcaaaccgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgcGGGAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTCTCTTATTTCAGCGCGACTGGTGagaaga                                                                                                                                                                                               >  1:316487‑M2/182‑250 (MQ=255)
                                                 cgtgacgacttttttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATcaacaa                                                                                                                                                                                      <  2:114699‑M2/78‑1 (MQ=255)
                                                              ttcatcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGttt                                                                                                                                                                          <  1:269929‑M2/90‑1 (MQ=255)
                                                                catcggtctcgctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGtttttt                                                                                                                                                                       <  1:98021‑M2/93‑1 (MQ=255)
                                                                           ctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagaag                                                                                                                                                                                                >  1:257019‑M2/148‑215 (MQ=255)
                                                                           ctccagttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagaag                                                                                                                                                                                                <  2:257019‑M2/68‑1 (MQ=255)
                                                                                gttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacagtctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAAGTGCTCCGGTTTTTTCCATATTAATATTAGc                                                                                                                                                       <  1:161804‑M2/109‑1 (MQ=255)
                                                                                 ttaatcaaatcacgcatacgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCt                                                                                                                                                      >  2:214227‑M2/142‑251 (MQ=255)
                                                                                                  acgcgctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTg                                                                                                                                     <  1:49764‑M2/127‑1 (MQ=255)
                                                                                                      gctctcgactacagtatgcatcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctttcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCg                                                                                                                                 <  1:420673‑M2/131‑1 (MQ=255)
                                                                                                                         atcttttatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGt                                                                                                              >  1:182893‑M2/102‑251 (MQ=255)
                                                                                                                            ttttatgcaaaattttatggggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGcgttc                                                                                                            >  1:160039‑M2/99‑248 (MQ=255)
                                                                                                                              ttatgccacattttatgtggggtcattccctgatattacgggcactatttagtcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATAACAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAg                                                                                                          <  2:7889‑M2/154‑1 (MQ=255)
                                                                                                                               tatgccacattttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGc                                                                                                         <  1:471827‑M2/155‑1 (MQ=255)
                                                                                                                                      cattttatgtggggtcattccctgatattacgggaactatttcttcaaaactctgacgaaaaacaggctgtcgtcagttttgccgtgtGGTACGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGTCAGAGACAAAAAAAGCgtccagcatggttgg                                                                                                 >  2:463859‑M2/89‑244 (MQ=255)
                                                                                                                                       attttatgtggggtcattccctgatattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTGCCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGTGCGACAGAGACAAAAAAAGCGTCCAGcaaggttggt                                                                                                <  1:434839‑M2/164‑4 (MQ=255)
                                                                                                                                                ggggtaattccctgatattacgggctctagtcattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTGTCTTAGTGCAGCGCGACTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGTGACAGATACaaaaagagcgtccagcaagtgtggttggaatatt                                                                                       <  2:60809‑M2/173‑17 (MQ=255)
                                                                                                                                                  ggtcattccctgatattacgggcactatttattcaaatctctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATGTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCt                                                                                     <  2:412948‑M2/175‑1 (MQ=255)
                                                                                                                                                              atattacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCAtt                                                                         <  1:114087‑M2/187‑1 (MQ=255)
                                                                                                                                                                attacgggcactatttattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGCCAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTAc                                                                       >  1:242439‑M2/63‑251 (MQ=255)
                                                                                                                                                                               tattcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGTGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGc                                                         <  1:52288‑M2/203‑1 (MQ=255)
                                                                                                                                                                                  tcaaaactctgacgaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGttt                                                     >  1:35012‑M2/45‑251 (MQ=255)
                                                                                                                                                                                               gaaaaacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTg                                         >  1:1493‑M2/32‑250 (MQ=255)
                                                                                                                                                                                                   aacaggctgtcgtcagttttgacgtgaGGTAAGGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCa                                     >  1:365666‑M2/28‑250 (MQ=255)
                                                                                                                                                                                                     caggctgtcgtcagttttgacgtgaGGTAAAGGGACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCAaat                                  >  2:74434‑M2/26‑251 (MQ=255)
                                                                                                                                                                                                             cgtcagttttgactggaGGTAAGGGGACATTTACTCCGCGATGGATGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTGCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCaaataatatga                           <  2:316487‑M2/233‑3 (MQ=255)
                                                                                                                                                                                                                      tgacgggaGGTAAGGGTACAGTAACTTCGCGATGGCAGAATTACCTTTTTCTGATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTGCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCAAATAATAGGATCGGCCAGt                  <  2:542805‑M2/242‑1 (MQ=255)
                                                                                                                                                                                                                                     ggACAGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTCCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAGGTTGGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCAAATAATATGATCGGCCAGTTTCGCTATCGGTGAAt  <  1:281667/251‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      
ATTGAAAATCGCCTTCTGAAGGAGAGGCAAAAATATCAACGCTGACGCCCAGTGTTTTTGCTTCATCTTCAATGCCTTTTTTCATATCTACCCAAAATGGGTTGGAGAGGGTTTTCAATACGACAGCATATTCGGCGGCAGCAAAAGCGCTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCGAGGCATTACGACCTAATAACGGCGTTTCCGGGGCTGGTGAGCAAATAATATAATCGGCCAGTTTCGCTATCGGTGAAT  >  NC_000913/4311835‑4312315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: