New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	79 (0.890)	69/490	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 2406787	0 (0.000)					intergenic (‑146/‑774)	lrhA/alaA	DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA

ACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCA  >  NC_000913/2406538‑2407029                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   acaGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCCGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg                                                                                                                                                                                                                                                   >  2:535860/1‑251 (MQ=255) acaGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg                                                                                                                                                                                                                                                   >  1:63048/1‑251 (MQ=255)       gCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAAAGCATATGAGTTGCACTAAAAAAGCggtaatg                                                                                                                                                                                                                                             >  2:543351‑M2/1‑244 (MQ=255)               ggCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaac                                                                                                                                                                                                                                     <  2:195622‑M2/251‑16 (MQ=255)                 cagcaAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaactt                                                                                                                                                                                                                                   <  1:123‑M2/251‑18 (MQ=255)                     aaaaGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattg                                                                                                                                                                                                                               >  1:195622‑M2/1‑230 (MQ=255)                      aaaGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTTATTATCGGACGATTTGCCCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAATCggtaatgactccaacttattga                                                                                                                                                                                                                              >  1:450254‑M2/1‑229 (MQ=255)                               aaatcGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTTGAGGTTAATTATCGGATGATTTGGACATATCATATATTATCACTTACTGGAGGCGCATACAGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCACCCTGGCAGTTACAACCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtgatgactccaacttattgagaatttttt                                                                                                                                                                                                                     >  2:261193‑M2/3‑220 (MQ=255)                                 aTCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttat                                                                                                                                                                                                                   <  1:227987‑M2/251‑34 (MQ=255)                                   cGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgt                                                                                                                                                                                                                 <  1:512863‑M2/251‑36 (MQ=255)                                          agcaacaACTGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCCCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGAAGAAAGTAAAAATGCATATGATTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttaagat                                                                                                                                                                                                           <  1:527632‑M2/250‑42 (MQ=255)                                            caacaaATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataat                                                                                                                                                                                                        <  1:188435‑M2/251‑45 (MQ=255)                                               caaATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                                                                                                                     <  1:497160‑M2/251‑48 (MQ=255)                                                                 cgaggtcgaggtTCATTACAGGACGATTTGAACTTATCATATATTATCACTTACTGGCGGCTCATACATAGCTGGTTAATGCTGTGCACACCCAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGCACCCGGCCGAAAGTAAAAATGAATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagggttttattttcagataatgcccgatgactttgtcctt                                                                                                                                                                                     <  2:687566‑M2/249‑64 (MQ=255)                                                                 cgaggtcgaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTTTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAATAAGCggtaatgactccaacttattgatagtgttttatgttaagctaatgcccgatgaattagtcatgc                                                                                                                                                                                    <  2:165884‑M2/250‑65 (MQ=255)                                                                  gaggtcgaggtTAATTATCGGACGATTTGCANTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGGGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcag                                                                                                                                                                                  >  2:322815‑M2/1‑185 (MQ=255)                                                                   aggtcgaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGCCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaaattattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc                                                                                                                                                                                 <  2:217143‑M2/251‑68 (MQ=255)                                                                   aggtcgaggcTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGTACATACTGAGCTGGTTCATGCTGTACACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCCGAACCCGGACGAACGAAAAACTGCATTTGATTTGCACTAAAAAAGCggcaatgactccaacttattgatagtgttttatgttacgatcattcccgatcaatttgtcatgcagc                                                                                                                                                                                 <  2:87093‑M2/251‑68 (MQ=255)                                                                        gaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                                                                                                                            <  1:379516‑M2/251‑73 (MQ=255)                                                                         aggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc                                                                                                                                                                           >  2:233019‑M2/1‑178 (MQ=255)                                                                             tAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                                                                                                                        >  1:222287‑M2/1‑174 (MQ=255)                                                                              aaTTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt                                                                                                                                                                      <  1:243323‑M2/251‑79 (MQ=255)                                                                                   tCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                                                                                                                    <  1:314993‑M2/248‑81 (MQ=255)                                                                                        cGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac                                                                                                                                                            <  1:497402‑M2/251‑89 (MQ=255)                                                                                          aTTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccggttttgagaacgac                                                                                                                                                            <  1:669496‑M2/249‑89 (MQ=255)                                                                                            ttGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                                                                                                                         >  1:360976‑M2/1‑159 (MQ=255)                                                                                                aCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                                                                                                                    >  2:118576‑M2/1‑155 (MQ=255)                                                                                                aCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                                                                                                                    >  1:73038‑M2/1‑155 (MQ=255)                                                                                                  ttATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCCCCCACAAACAAGCAATTCCATTTGTAATGCGCCTCCCTCGCCGTTTCATCCGGCACCCGGACGAAAGAAAAAATGCATATGAGATGCACTAAAAAAGCggtaatgactcccacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgccgctccaccgcttttgagaacgaccgcgacttcc                                                                                                                                                  <  1:333875‑M2/251‑99 (MQ=255)                                                                                                      cATATATTATCTCTTACGGGCGGCTAATACGGAGCTGGTTAATGCTGGGGACACAAAAACAAGCAATTACATGTGTAATGTGCCTCCCTGGCAGTTTCATCCGGACCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagagacttccgtcc                                                                                                                                              >  2:525748‑M2/1‑149 (MQ=255)                                                                                                      cATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttggcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                                                                                                                              >  2:269297‑M2/1‑149 (MQ=255)                                                                                                         atatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                                                                                                                                            >  2:255564‑M2/1‑146 (MQ=255)                                                                                                            ttatCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg                                                                                                                                        <  2:303982‑M2/251‑109 (MQ=255)                                                                                                             tatCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgg                                                                                                                                       <  1:112236‑M2/251‑110 (MQ=255)                                                                                                                    tACTGGCGGCTCATACTGAGCTGGTTAATGNTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                                                                                                                                 >  2:322713‑M2/1‑135 (MQ=255)                                                                                                                     aCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                                                                                                                               <  1:104288‑M2/251‑118 (MQ=255)                                                                                                                        ggcggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                                                                                                                             >  2:511887‑M2/1‑131 (MQ=255)                                                                                                                             cTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                                                                                                                        <  1:719898‑M2/250‑125 (MQ=255)                                                                                                                                aTACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                                                                                                                        <  1:59719‑M2/247‑125 (MQ=255)                                                                                                                                     gAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg                                                                                                               <  2:521478‑M2/251‑134 (MQ=255)                                                                                                                                      aGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggt                                                                                                              <  2:512218‑M2/251‑135 (MQ=255)                                                                                                                                       gCTGGTTAATGCGGTGCACACACAAACAAGCNATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAATCCGAACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCgttaattactccaatttattgagagtgtttactgttcagataatgccctatgactttgtcatgcagctccaccgattttgaaaccgacagcggtttccgtcccagccgtgccagttgttgcttcatattcagggt                                                                                                             >  2:338993‑M2/1‑116 (MQ=255)                                                                                                                                          ggTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgccagcgacttccgtaccagccgtgccaggtgctgcctcagattcaggatatg                                                                                                          <  2:586419‑M2/251‑139 (MQ=255)                                                                                                                                          ggTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttat                                                                                                           >  1:535860‑M2/1‑113 (MQ=255)                                                                                                                                          ggTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattaaggttatg                                                                                                          <  1:669876‑M2/251‑139 (MQ=255)                                                                                                                                                    gtgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaat                                                                                                 >  1:215917‑M2/1‑103 (MQ=255)                                                                                                                                                        acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgct                                                                                            <  2:285216‑M2/251‑153 (MQ=255)                                                                                                                                                         cacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctg                                                                                           >  1:119494‑M2/1‑98 (MQ=255)                                                                                                                                                          acacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggttctgcctcagattcaggttatgccgctcaattcgctgc                                                                                          >  2:201004‑M2/1‑97 (MQ=255)                                                                                                                                                                  aaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcg                                                                                  >  2:305285‑M2/1‑89 (MQ=255)                                                                                                                                                                     cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATAGGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgttgcctcagattcaggttatgccgctcaagtcgctgcgtatatcgctt                                                                               >  2:615119‑M2/1‑86 (MQ=255)                                                                                                                                                                        ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGTAAGTAACAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgct                                                                            <  2:452561‑M2/251‑169 (MQ=255)                                                                                                                                                                         tCCATTTGTAATGTGCCTCCCTGGCAGTTTCAGCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttattttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgatttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgct                                                                            >  2:111540‑M2/1‑82 (MQ=255)                                                                                                                                                                         accaTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGCCGAAAGTATAAATGCCTATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgacagatgactttgtcatgcagctccaccgattttgagaccgacagcgacttccgtcccagccgtcccaggtgctgcctcagaatcaggttatgccgctcacttcgctgcgtatatcgcttgatg                                                                           <  2:51409‑M2/250‑170 (MQ=255)                                                                                                                                                                          ccATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACTCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccagcttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccgccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctga                                                                          >  1:562991‑M2/1‑81 (MQ=255)                                                                                                                                                                           cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgat                                                                         >  1:176699‑M2/1‑80 (MQ=255)                                                                                                                                                                            aTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgatt                                                                        >  2:250103‑M2/1‑79 (MQ=255)                                                                                                                                                                              ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattac                                                                      <  2:708047‑M2/251‑175 (MQ=255)                                                                                                                                                                               tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattac                                                                      >  1:171021‑M2/1‑76 (MQ=255)                                                                                                                                                                                  aaTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgc                                                                  <  1:556354‑M2/251‑179 (MQ=255)                                                                                                                                                                                     gtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagc                                                               <  1:688471‑M2/251‑182 (MQ=255)                                                                                                                                                                                      tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagct                                                              <  1:317524‑M2/251‑183 (MQ=255)                                                                                                                                                                                          tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcc                                                          <  2:105288‑M2/251‑187 (MQ=255)                                                                                                                                                                                               ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttc                                                      >  1:285216‑M2/1‑60 (MQ=255)                                                                                                                                                                                                 cAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgcctttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcagg                                                   <  1:677175‑M2/251‑194 (MQ=255)                                                                                                                                                                                                  aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggc                                                  <  1:242612‑M2/251‑195 (MQ=255)                                                                                                                                                                                                   gTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcg                                                 >  1:217143‑M2/1‑56 (MQ=255)                                                                                                                                                                                                        aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggctt                                            <  2:493123‑M2/251‑201 (MQ=255)                                                                                                                                                                                                            ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCgggaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcat                                         <  1:398713‑M2/250‑204 (MQ=255)                                                                                                                                                                                                                   ggACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggc                                 >  1:190700‑M2/1‑40 (MQ=255)                                                                                                                                                                                                                     aCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                                                                                                                              <  1:657902‑M2/140‑103 (MQ=255)                                                                                                                                                                                                                     aCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttggcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                                                                                                                              >  2:657902‑M2/1‑38 (MQ=255)                                                                                                                                                                                                                        aaaGTAAAAATGCATATGAGTTGCACTAAAANAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagcc                            >  2:317524‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                            tAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatcc                        <  1:169879‑M2/251‑221 (MQ=255)                                                                                                                                                                                                                                aaTGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtc                     <  2:190522‑M2/250‑224 (MQ=255)                                                                                                                                                                                                                                         gAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatca           >  1:521478‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                          aGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcac          >  1:335325‑M2/1‑17 (MQ=255)                                                                                                                                                                                                                                              gCACTAAAAAAGCggtaatgactccaacttattgctagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccctccgtcatccatatcaccacg      <  2:140137‑M2/251‑239 (MQ=255)                                                                                                                                                                                                                                                   aaaaaaGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagcttcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcataccgcggccagccacccgtcatccatatcaccacgtcaa  <  2:12872‑M2/250‑243 (MQ=255)                                                                                                                                                                                                                                                      aaaGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttc                                                      <  2:182955‑M2/195‑191 (MQ=255)                                                                                                                                                                                                                                                      aaaGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttc                                                      >  1:182955‑M2/1‑5 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   ACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCA  >  NC_000913/2406538‑2407029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.