Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,235,905 16376 bp→AAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGC yjbEmalM yjbE, yjbF, yjbG, yjbH, yjbT, psiE, xylE, malH, malG, malF, malE, malK, lamB, malM

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4235905 4252280 16376 55 [0] [0] 59 yjbE–malM yjbE,yjbF,yjbG,yjbH,yjbT,psiE,xylE,malH,malG,malF,malE,malK,lamB,malM

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42359040 (0.000)40 (0.570)
+AAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGC
35/388 0.6 100% intergenic (+497/‑2) pgi/yjbE glucose‑6‑phosphate isomerase/uncharacterized protein YjbE
?NC_000913 4252281 = 0 (0.000)intergenic (+1807/‑225) malM/ubiC maltose regulon periplasmic protein/chorismate lyase

AAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTTATGAAAAAAGTTCTGTATGGCATTTTTGCCATATCTGCGCTTGCGGCGACTTCTGCGTGGGCTGCACCTGTACAGGTGGGCGAAGCGGCAGGGTCGGCAGCAACGTCGGTTTCGGCGGGGAGTTCCTCCGCGACCAGCGTCAGCACCGTAAGCTCGGCGGTGGGTGTCGCGCTTGCGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAA  >  NC_000913/4235655‑4236151
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       
aaaaTAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGt                                                                                                                                                                                                                                                         <  2:591221/250‑1 (MQ=255)
           ttAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaa                                                                                                                                                                                                                                              >  1:378256‑M1/1‑239 (MQ=255)
              ctcGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGTAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGAGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGATTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaatggaaaac                                                                                                                                                                                                                                           >  2:314701‑M1/2‑236 (MQ=255)
                 gttgttTATTTCGGAAAATACGCAGATTAATNGATTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTATTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatca                                                                                                                                                                                                                                       <  2:326751‑M1/251‑19 (MQ=255)
                    gttTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaac                                                                                                                                                                                                                                     <  1:345059‑M1/250‑21 (MQ=255)
                       tATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgtt                                                                                                                                                                                                                                  <  1:522506‑M1/250‑24 (MQ=255)
                        aTTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcg                                                                                                                                                                                                                                >  1:211066‑M1/1‑226 (MQ=255)
                              gAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaag                                                                                                                                                                                                                          <  2:300959‑M1/251‑32 (MQ=255)
                                 aaTACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAATTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaa                                                                                                                                                                                                                        >  2:498030‑M1/1‑217 (MQ=255)
                                  aTACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAAGCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaa                                                                                                                                                                                                                      <  2:440550‑M1/251‑36 (MQ=255)
                                     cGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgc                                                                                                                                                                                                                   >  2:392662‑M1/1‑213 (MQ=255)
                                      gcatattaaTTGCTGGTGTTTTTATTTTAAGTGTATGATTTTTATTGTTATTTAAATATAACTTTAAACTTATATTTAATATGCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGTCGTAATTCGCATGCTTTAGTTGTGTATACGCGATCCCGCCCAAAATGTTTTTTGGTAAATCTCCAATCATTCAATGAAGGGAACTCGCaagtaaagcaaaacatcaacgttcgcaaaagaaaatgct                                                                                                                                                                                                                  <  2:454819‑M1/247‑40 (MQ=255)
                                            tAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGCTTTTCATTCCAATTATCCTAAAACTCCATCGCTAATTACCCGCGCCGTAATTCGCATGCTTTAGTTGAGTATACTCGCTCCCGCCCGAAATGTTTTTGGTTAAATCTCCATTCATTCAATGAAGGGAAATTGTaattaaaggaaaacatcaacattaccaaaagacaatgtcgatttg                                                                                                                                                                                                            >  2:496625‑M1/1‑206 (MQ=255)
                                            tAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgattt                                                                                                                                                                                                             <  1:498030‑M1/250‑45 (MQ=255)
                                                  cTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccg                                                                                                                                                                                                      >  2:668036‑M1/1‑200 (MQ=255)
                                                       gTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaag                                                                                                                                                                                                 <  1:221648‑M1/251‑57 (MQ=255)
                                                                 taAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaa                                                                                                                                                                                        <  2:197797‑M1/250‑66 (MQ=255)
                                                                        aTGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcacc                                                                                                                                                                                >  1:165290‑M1/1‑178 (MQ=255)
                                                                          gATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgt                                                                                                                                                                              >  1:136081‑M1/1‑176 (MQ=255)
                                                                            tttttATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttc                                                                                                                                                                            >  1:119385‑M1/1‑174 (MQ=255)
                                                                                         ttAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTACCCTAAAACCCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCTAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcaacctgg                                                                                                                                                                <  2:556437‑M1/250‑90 (MQ=255)
                                                                                          tAAATAGAAGTTTAAACGTATATTTGATATNCATTCCAATTATCCTAAAACGCCATCGCGAATTCCCCGCGCCGTAAGTCGCATGCTTTAGTGGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctgga                                                                                                                                                               <  2:328745‑M1/250‑91 (MQ=255)
                                                                                                  aGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacntcaccgttcctggcatcctggacggtgatgc                                                                                                                                                      >  2:340927‑M1/1‑152 (MQ=255)
                                                                                                       aaaCTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccct                                                                                                                                                  >  1:207848‑M1/1‑147 (MQ=255)
                                                                                                         aCTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacg                                                                                                                                               >  1:90434‑M1/1‑145 (MQ=255)
                                                                                                           ttATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggt                                                                                                                                             >  1:556171‑M1/1‑143 (MQ=255)
                                                                                                             atatGTGATATTCAGTCCAATTATCCTTAAACGCCATCGCTAAATCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGACCCCGCCCGAAAGGTTGTTGGGTAAATCTCCAGTCATGCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgagttgcggccgttaagtaaaggaaaacatcaccgttcctggcatcctggacggttacgcccctacggtt                                                                                                                                            <  2:641265‑M1/250‑110 (MQ=255)
                                                                                                                   gATATTCATTCCAATTATGCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTCAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcg                                                                                                                                     >  2:609910‑M1/1‑135 (MQ=255)
                                                                                                                   gATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgctttgcggccgctaagtaaaggaaaacatcccctttccatgcatcctggacggggctgcccctacggttgccctcc                                                                                                                                     >  2:456492‑M1/1‑135 (MQ=255)
                                                                                                                   gATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgatcctggcatcctggacggtgatgcccctacggttgccctcg                                                                                                                                     >  2:252743‑M1/1‑135 (MQ=255)
                                                                                                                          attcCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcac                                                                                                                              >  1:437885‑M1/1‑128 (MQ=255)
                                                                                                                          attcCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcac                                                                                                                              <  1:137123‑M1/251‑124 (MQ=255)
                                                                                                                          attcCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCAGTACTTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggtcggggatgcccctacggttgccctcgccagcac                                                                                                                              >  2:725844‑M1/1‑128 (MQ=255)
                                                                                                                                aTTATCCTAAAACGACATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgcaagcacgggcat                                                                                                                        >  2:230931‑M1/1‑122 (MQ=255)
                                                                                                                                 ttATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctcagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatc                                                                                                                       >  1:663202‑M1/1‑121 (MQ=255)
                                                                                                                                     ccTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacagcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggta                                                                                                                   <  2:211066‑M1/251‑135 (MQ=255)
                                                                                                                                             gCCATCGCTAATTCCCCGAGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgta                                                                                                            >  2:601019‑M1/1‑109 (MQ=255)
                                                                                                                                                aTCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGAGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaacagaaaatgccgatttgcggccgctaagtacaggaaaacatcaccgttcctggcatcctggacggtgatacccctacggttgcccgcgccagacagggtatcggtaaagcgacgtgt                                                                                                        >  2:404318‑M1/1‑106 (MQ=255)
                                                                                                                                                                gcCGTACTTAGCATGCTTTAGTTGTGTATACTCGAACCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGACGGGAAATTGTaagtaaaggaaaacatcaacgttcgcacaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgatcctggcagcctggacggtgatgcccctacggttgccctagccagcccggtcatcggtagagcgtgaggatcaacaccgttttacc                                                                                        >  2:19142‑M1/1‑90 (MQ=255)
                                                                                                                                                                     aaTTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttc                                                                                   >  1:22428‑M1/1‑85 (MQ=255)
                                                                                                                                                                        tCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatg                                                                                >  2:445480‑M1/1‑82 (MQ=255)
                                                                                                                                                                           cATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttactggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcg                                                                              >  1:305802‑M1/1‑79 (MQ=255)
                                                                                                                                                                                                 gATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtat                                                       >  1:146819‑M1/1‑57 (MQ=255)
                                                                                                                                                                                                 gATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtat                                                       <  1:314701‑M1/251‑195 (MQ=255)
                                                                                                                                                                                                 gATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggc                                                                                                                          <  2:375756‑M1/184‑128 (MQ=255)
                                                                                                                                                                                                 gATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggc                                                                                                                          >  1:375756‑M1/1‑57 (MQ=255)
                                                                                                                                                                                                                gTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaattt                                        <  1:61828‑M1/251‑210 (MQ=255)
                                                                                                                                                                                                                 tttttGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttg                                       >  2:514553‑M1/1‑41 (MQ=255)
                                                                                                                                                                                                                 tttgtgggtAAAATTCAATTCAGTCAATTAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatgtgcggccgctaagtaaaggaaaacatcaccgttcctggcagcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgactgttgcgtttttgttgcgtattagatcccttaattt                                        <  2:24320‑M1/246‑210 (MQ=255)
                                                                                                                                                                                                                              ctcCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctccc                          >  1:206659‑M1/1‑28 (MQ=255)
                                                                                                                                                                                                                                ccATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatctccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcc                           <  1:306309‑M1/248‑223 (MQ=255)
                                                                                                                                                                                                                                           aTGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgccccgacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacacttttc             <  2:165290‑M1/251‑237 (MQ=255)
                                                                                                                                                                                                                                                 ggAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacacttttctgcga        >  1:225340‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                                                    aaTTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaaacgtacggttcaacatcgttttaccacttcatgcgattgttgcgtttttggtgcgtattagatcacttaatttgcttnacatctcccgtaaacacttttcttcgataa     >  2:331992‑M1/1‑6 (MQ=255)
                                                                                                                                                                                                                                                       tGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacacttttctgcgatacaat  <  2:275161‑M1/250‑248 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       
AAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTTATGAAAAAAGTTCTGTATGGCATTTTTGCCATATCTGCGCTTGCGGCGACTTCTGCGTGGGCTGCACCTGTACAGGTGGGCGAAGCGGCAGGGTCGGCAGCAACGTCGGTTTCGGCGGGGAGTTCCTCCGCGACCAGCGTCAGCACCGTAAGCTCGGCGGTGGGTGTCGCGCTTGCGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAA  >  NC_000913/4235655‑4236151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.