Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,836,957	Δ8,771 bp		[setC]–[adeD]	[setC], yicL, yicU, nlpA, yicS, nepI, yicN, adeQ, [adeD]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3836957	3845727	8771	20 [0]	[0] 20	[setC]–[adeD]	[setC],yicL,yicU,nlpA,yicS,nepI,yicN,adeQ,[adeD]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3836956	0 (0.000)	20 (0.310)	18/478	1.5	100%	coding (4/1185 nt)	setC	putative arabinose exporter
	?	NC_000913	3845728 =	0 (0.000)					coding (1765/1767 nt)	adeD	adenine deaminase

GCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGTCAGGGGCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCA  >  NC_000913/3845486‑3845938                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                   aacttgttttatttttactatcaaaaatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATaaaaa                                                                                                                                                                                                            <  2:89048‑M2/9‑1 (MQ=255)                  ctatcaaaaatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGcc                                                                                                                                                                                           >  1:226174‑M2/226‑251 (MQ=255)                                  attgccttactataattaatatataaattcggtaattaattcttaacatacttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCAcc                                                                                                                                                                             >  1:271963‑M2/210‑249 (MQ=255)                                    tgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatatcaattgctggccctataatattgcgctagccttgctttctggttgtatcagcgatactcaaaaattcttaatacaaaactcattcgactggtacttatttgtaactcagttatattttttcacccggtgtttcggaagaattcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGACACCAGtt                                                                                                                                                                         >  2:399714‑M2/208‑251 (MQ=255)                                              taattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGc                                                                                                                                                               >  1:326326‑M2/198‑251 (MQ=255)                                                attaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATgccc                                                                                                                                                             >  2:263008‑M2/196‑250 (MQ=255)                                                        ataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAAc                                                                                                                                                     >  2:352630‑M2/188‑251 (MQ=255)                                                          aaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAAct                                                                                                                                                    <  1:9470‑M2/65‑1 (MQ=255)                                                           aattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAActgc                                                                                                                                                  >  1:163586‑M2/185‑251 (MQ=255)                                                                                   gcttttactaataatctcaattgctggccctataatagtgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGAtt                                                                                                                          <  1:482717‑M2/91‑1 (MQ=255)                                                                                            aataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGttct                                                                                                                 >  1:117735‑M2/152‑251 (MQ=255)                                                                                                   tcaattggtgggcctgtaatattgagctagcattgctttctggatgtatcagcgacactaaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgtttcagaagaatgcTAATAAAAAAAGCCCGGCGCCATGCAGGGCAAAAGTCACAAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGAGGCGGATTTTGAGTTCTTCCAtt                                                                                                           >  2:429461‑M2/145‑250 (MQ=255)                                                                                                                                                         atactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCgcgg                                                    >  1:65059‑M2/91‑251 (MQ=255)                                                                                                                                                         atactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCgcgg                                                    >  1:461264‑M2/91‑251 (MQ=255)                                                                                                                                                                                         gactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGaa                     >  1:98566‑M2/59‑250 (MQ=255)                                                                                                                                                                                         gactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAAt                    >  1:340186‑M2/59‑251 (MQ=255)                                                                                                                                                                                                        gtaactcagttatattttttcgcccggtgattcagaagactgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGAt                                                                                                                           >  2:75511‑M2/44‑133 (MQ=255)                                                                                                                                                                                                        gtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCTGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGTCGGAt                                                                                                                           <  1:75511‑M2/90‑1 (MQ=255)                                                                                                                                                                                                           actcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGc   >  1:317011‑M2/41‑250 (MQ=255)                                                                                                                                                                                                            ctcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCa  >  1:223664‑M2/40‑250 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                   GCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGTCAGGGGCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCA  >  NC_000913/3845486‑3845938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑