| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,499,401 | Δ12,725 bp | yhfL–[yhfZ] | yhfL, frlA, frlB, frlC, frlD, frlR, yhfS, yhfT, yhfU, php, yhfW, yhfX, yhfY, [yhfZ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3499401 | 3512125 | 12725 | 40 [0] | [0] 40 | yhfL–[yhfZ] | yhfL,frlA,frlB,frlC,frlD,frlR,yhfS,yhfT,yhfU,php,yhfW,yhfX,yhfY,[yhfZ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3499400 | 0 (0.000) | 40 (0.610) | 38/478 | 0.3 | 100% | intergenic (+199/‑48) | cysG/yhfL | siroheme synthase/DUF4223 domain‑containing lipoprotein YhfL |
| ? | NC_000913 | 3512126 = | 0 (0.000) | coding (219/906 nt) | yhfZ | putative DNA‑binding transcriptional regulator YhfZ | |||||
ATAAGCCTTTTTGCGTGAGATAACTTTCCGCCGCTAGTCGCGAAACCACCGCCATGTCATACACGCCATTAAGCAGACACTCCACGCGAATATCCGCGCCACGCATGTGCGCATAGTAAAAAGGAATGCCATCAAACTGGGCTTTCAATCCGCTCGCCAGGCCTTCGTACAAACGGGTATAGGGCAAGGGCATTGCACATACCACGTTGTTGATATCCACATGAGTCAGCAATGCTTTGTTATCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATT > NC_000913/3511879‑3512363 | cgggttgttggcctgcgcgataaactgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCg > 2:390762‑M2/248‑251 (MQ=255) gttggcctgcgcgataaactgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGAcc > 1:228048‑M2/242‑248 (MQ=255) ggcctgcgcgataaactgaactggttctccaaccattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATaa < 1:175080‑M2/13‑1 (MQ=255) cattaatttaacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATc < 2:144235‑M2/46‑1 (MQ=255) aacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatatttCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCt < 2:95553‑M2/54‑1 (MQ=255) aacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCtt < 1:36122‑M2/55‑1 (MQ=255) aacccgggccagagaattctggccttcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCt < 2:108385‑M2/54‑1 (MQ=255) tcttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCt > 1:426928‑M2/172‑251 (MQ=255) ttaatgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGc > 1:491628‑M2/170‑251 (MQ=255) taatgactctttttatatattcagcaaanaaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCt < 2:228048‑M2/80‑1 (MQ=255) tgactctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTc > 2:268270‑M2/166‑250 (MQ=255) ctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAAcgc < 2:15196‑M2/75‑1 (MQ=255) ctttttatatattcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAAcgc > 1:15196‑M2/161‑235 (MQ=255) attcagcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAAc > 1:206800‑M2/151‑251 (MQ=255) gcaaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGNGGCCTGCGTCAGGCCAACGGATGAACGGcat > 2:242655‑M2/146‑251 (MQ=255) aaataaaacatagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGcattc < 2:31896‑M2/108‑1 (MQ=255) atagccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGcc > 1:311877‑M2/135‑249 (MQ=255) agccccttaataaatattatctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCt > 1:23086‑M2/133‑251 (MQ=255) atctgctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAAt < 2:108556‑M2/136‑1 (MQ=255) gctaatgggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGAtt < 1:307536‑M2/141‑1 (MQ=255) aattgtttatattccccgttacagcgacttacaaaattaattcattcgcttactgacgccaattaaatattcctgtatcgttcttaacgtgcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGGCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGTCAACGGAAGAACGGCATTCATTTGCCAGCGCATCTATGGTTTTCAATCGATTAc < 2:427288‑M2/143‑1 (MQ=255) gggttatattcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGc > 1:135501‑M2/105‑250 (MQ=255) gttatattcaccgttacagcgaatttcaaaattaagtctttcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACt < 2:299715‑M2/149‑1 (MQ=255) attcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCACCGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTc > 2:337368‑M2/98‑250 (MQ=255) tcaccgttacagcgacttacaaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCAc < 1:268270‑M2/155‑1 (MQ=255) tacaaaattaagtcattcgctcactgacgccaattaaattttcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCCGATAACTGCCATTGCGCCCCCGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGcc < 2:93088‑M2/172‑1 (MQ=255) caaaattaagtcattcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGc > 2:82521‑M2/77‑251 (MQ=255) cattcgctcactgacgccaattaaatattcctttatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATgac < 2:135501‑M2/186‑1 (MQ=255) attcgctcactgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATgacg < 1:390762‑M2/187‑1 (MQ=255) ctgacgccaattaaatattcctgtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTAACGCACTTTTCACCCAACAAATAACGGGCCAGCCTCGTGATGACGACGCcttct > 2:79095‑M2/56‑251 (MQ=255) aaatattcctgtatcgttcttaacgaccagtcttcgtaaattcCTCGACCAGAAAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACACGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCTCTTTTCACCCAACAAATAACGGACCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAAc < 2:151079‑M2/208‑1 (MQ=255) gtatcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGc < 2:488141‑M2/217‑1 (MQ=255) atcgttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGCTGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGTCGACGCCTTCTTTTTTGATAAACGTTCGACGCat > 2:365531‑M2/32‑250 (MQ=255) gttcttaacgagcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCataat > 1:140050‑M2/29‑250 (MQ=255) gtcttaatgagcagtcttcttttattcCTCGACCAGGTAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCTGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGTTTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAATCTTTCGACGCataat < 2:214461‑M2/222‑1 (MQ=255) agcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGt > 2:369706‑M2/19‑251 (MQ=255) agcagtcttcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGGTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGt > 2:384924‑M2/19‑251 (MQ=255) gcagtcttcgtatattcCTCGACCATATACCTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTa < 2:23086‑M2/234‑1 (MQ=255) gtcttcgtatagtcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGTGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAAt < 1:242655‑M2/237‑1 (MQ=255) tcgtatattcCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGACTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAAtt < 1:124941‑M2/238‑1 (MQ=255) | ATAAGCCTTTTTGCGTGAGATAACTTTCCGCCGCTAGTCGCGAAACCACCGCCATGTCATACACGCCATTAAGCAGACACTCCACGCGAATATCCGCGCCACGCATGTGCGCATAGTAAAAAGGAATGCCATCAAACTGGGCTTTCAATCCGCTCGCCAGGCCTTCGTACAAACGGGTATAGGGCAAGGGCATTGCACATACCACGTTGTTGATATCCACATGAGTCAGCAATGCTTTGTTATCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATT > NC_000913/3511879‑3512363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |