| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,509 | Δ16,346 bp | [gspB]–chiA | 17 genes [gspB], gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, chiA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453509 | 3469854 | 16346 | 33 [0] | [0] 33 | [gspB]–chiA | [gspB],gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,chiA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453508 | 0 (0.000) | 33 (0.220) | 31/486 | 1.8 | 100% | coding (420/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469855 = | 0 (0.000) | intergenic (‑2/+290) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGTTCTGCATGAGACCAGAGCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTTATCTCTCAAGTTCGTTCAGTGCATTTTTGACACGCTCTCTTAAACCGGCTTTCTCTTCGCTTTCTTCCACAGTATTTTCTTCGTCTTCAGAAGAAGAGGGGGCATTCTCAACCGCGACGCCTGGGTCATCTTCCTCCTCGACGGATTCGACGACGGGGAGTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGTTTAAAAGCGGGCGTTTCAGCCTCTACAGTGACTTCGGCTTTTAC > NC_000913/3453261‑3453750 | ggTTCTGCATGAGACCAGAGCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTat > 1:849362‑M1/1‑248 (MQ=255) cATGAGACCAGAGCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatccctt < 2:770676‑M1/251‑11 (MQ=255) gagaCCAGAGCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGGGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgt < 2:181187‑M1/250‑13 (MQ=255) ccAGAGCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGATCCTGCTGTCAACTGCGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCGTGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgt < 2:764084‑M1/251‑18 (MQ=255) agCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaa < 2:572310‑M1/251‑22 (MQ=255) attattTTATAAACGAAAATGATTACTCCTCAGAACCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGAAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgca > 1:960605‑M1/1‑223 (MQ=255) tataAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaa > 2:1169692‑M1/1‑216 (MQ=255) tataAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaa < 1:9155‑M1/250‑35 (MQ=255) aaCGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:515912‑M1/1‑212 (MQ=255) aaTGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgca < 1:202356‑M1/251‑46 (MQ=255) cctcAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattattt < 1:46506‑M1/251‑56 (MQ=255) cctcAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatt < 1:1169692‑M1/250‑55 (MQ=255) cctcAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:1004270‑M1/238‑43 (MQ=255) cctcAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 2:1004270‑M1/1‑196 (MQ=255) aCCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttt < 2:1014785‑M1/251‑62 (MQ=255) cccATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgtttt < 2:54026‑M1/251‑63 (MQ=255) aCGATTGATGGGAGAGTGTAACCGTTCTTACATAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgag < 1:358856‑M1/250‑68 (MQ=255) gATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggcattatttacgttt > 2:167327‑M1/1‑181 (MQ=255) gATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaatgatttacgttt < 1:167327‑M1/242‑62 (MQ=255) gggAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttca > 2:942320‑M1/1‑174 (MQ=255) aCGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcat < 1:942320‑M1/251‑98 (MQ=255) gAGCATTGTTAGGTAGCCTAATTCGGCTAACTGAGGTTCAGATTGATCCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataagcccttgtgacggaaaaactgcaaaacaaaagtcctacgcatgaattatttacgttttacgataacccttcaataggaattaaattactgcattaaaaataagaaaaaagc < 2:1171966‑M1/251‑116 (MQ=255) gAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcattaaaaataagaaaaaagc < 1:159873‑M1/251‑116 (MQ=255) aaTTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcattaaaaataagaaaaaagcctgacaaatgaagcatttt < 2:788921‑M1/251‑135 (MQ=255) gAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGAGCATTATACATACTTAACCTCCGAACGCAAGCGTAGTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacggtttacgagaacccttcaatatgaattaaattacggcattaaaaataagaaaaaagcctgacaaatgaagcattttaaaaacagaaa < 2:960605‑M1/249‑146 (MQ=255) tGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataa > 2:503086‑M1/1‑93 (MQ=255) tGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataa < 1:503086‑M1/97‑5 (MQ=255) aCCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcattaaaaataagaaaaaagcctgacaaatgaagcattttaaaaacagaaacattcatatttaaaat > 1:1192129‑M1/1‑90 (MQ=255) gctgTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcattaaaaataagaaaaaagcctgacaaatgaagcattttaaaaacagaaacattcatatttaaaatgt < 2:849362‑M1/249‑164 (MQ=255) aCTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgtt > 1:985305‑M1/1‑79 (MQ=255) aCTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgtt < 2:985305‑M1/139‑61 (MQ=255) gcgACAAGCCCGCGCAATAGACATACTTAACCACCGAACCGAAACGTATTGCTAGGAAAGTAAACAGCACTCGGGTataaacccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcaataaaaataagaaaaaagcctgacaaaggaagcattttaaaaacagaaacattcatatttaaaatgttaaattgaattg < 2:811081‑M1/250‑176 (MQ=255) ccTTCGGGTataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcaggaattatttacgttttacgagaacccttcaatatgaattaaattacggcattaaaaataagaaaaaagcctgacaaatgaagcattttaaaaacagaaacattcatatttaaaatgttaaattgaattgatattttaaatatgaataatttattcgttctgacagtacgaataagatatgccgtcaacaaatgcaa < 2:1192129‑M1/251‑243 (MQ=255) | GGTTCTGCATGAGACCAGAGCTCCAATTATTTTATAAACGAAAATGATTACTCCTCAGACCCATTACGATTGATGGGAGAGTGTAACCGTTCTTACGTAGCTCCCCGATTGGGAGCATTGTTAGGTAGCCAAATTCGGCTAACTGAGGTTCAGATTGAACCTGCTGTCAACTACGACAAGCCCGCGCATTATACATACTTAACCACCGAACGCAAGCGTATTGCTAGTAAAGTAAACAGCCTTCGGGTTATCTCTCAAGTTCGTTCAGTGCATTTTTGACACGCTCTCTTAAACCGGCTTTCTCTTCGCTTTCTTCCACAGTATTTTCTTCGTCTTCAGAAGAAGAGGGGGCATTCTCAACCGCGACGCCTGGGTCATCTTCCTCCTCGACGGATTCGACGACGGGGAGTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGTTTAAAAGCGGGCGTTTCAGCCTCTACAGTGACTTCGGCTTTTAC > NC_000913/3453261‑3453750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |